sp|Q8LA53|MBD2_ARATH ----> Methyl-CpG-binding domain-containing protein 2
Intron 1 GTGTGCAAGC ... GTCAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.19 | 53 | 37 | 18.1 |
| A2 | 40.8 | 28.3 | 20 | 19 |
| A3 | 32.64 | 41.3 | 26 | 14 |
| A4 | 34.84 | 15 | 13 | 3 |
| A5 | 25.38 | 20.7 | 11 | 3.1 |
| A6 | 44.74 | 109.9 | 100 | 77.9 |
| A7 | 43.66 | 105.9 | 122 | 42 |
| A8 | 36.36 | 118.6 | 86 | 49.5 |
| A9 | 38.06 | 101.8 | 78 | 47 |
| A10 | 39.56 | 80.6 | 67 | 38.5 |
>TRINITY_DN116779_c0_g1_i5 from sample A1 / Example spliced isoformTGCGTGATCAGAGTCAGGGACTCAGGATTCGAACAGTAAACGTCGGCACAATCGTTCTGCAGCAATAAAACAACAACTGAACGTCTCAGGGCAAATTCCCAGTTCGATTCTCGACAGTCCAATCCCAATCCTTCTAGAAATCGCCGTGTCTTTCAGCACCGGGCTTCATTCATCCACGGATTATTTACAGGCCCACGGAT
TGTACGTGGTCTTTCGCGCAAGGTGTATGCACGAGCATGGAGGGCAATAGAAAGCCGTGTCTCAAAGAGTCTACGTCTCGGCAATCTGCAGCAACCCACCAACGTTCACCTACCAGCTACCCATTCCCGTTGCTGAAGCAGGGAAAATCTGGTCCTAATGCTATTCCAGTTTCAGCAAGTCAGGATCCGCATCTGCCAAT
TTCTAACGAAATTGTGCCATTTCAGGCAGAGCACTTTAGAGATCCAACTCTAATGCTTTTCCCATTTTTGAAGCAGGAAAATCCCGTCTCTAATGCTGTTCCGATATCAGCAAGATCAGATCCGCATCTGCCAATATCTAATGAACTCGTACCTTTTCAGGAAGTGCATTTCAGAGATGCCTCTTCATTGGAGTATATTC
CATGTACTGAAGTCTATAATCCTGATGGAAATAATATTGAAGAACAGGAGAATGGCTCTGTTTCAGATCCCATTGTTGTACAAGAAAGTCCATTTAATGCTTTATCTATGCCAAGAGACACTTCAAAACGGGTTTTACCTGCTGTAGGGGCATTCACCGTTCAGTGTGCTAGGTGCTTCAAATGGAGGTTAATTCCAACT
AAGGAGCAATATGAAGCTATTCGACAATGCATTCTGGAGGATCCTTGGGTCTGTGAAAATGCTTATCCTTGGCGTCCAGATGCATCATGTGATGATCCAGCTGATATTTCACAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCTCCTCCTGGGTGGGAACGACTTCTTGTCATTAGAGGTGA
AGGTGCCTCTAAGTTTGCTGATGTGTACTATGTCACTCCATCAGGGAAGAAGTTACGCTCAATGGTCGAGGTTGAAAGGTTCTTGATAGAAAATCCAGAGTATCTAGAGGCGGGAATAAATCTTTCACAATTCTCCTATCAAATTCCTAAGCCCCTTTATGATGGTTATGTAAGAAAACGCTCAGCCAGTGCTACATCTG
GGGCTGACGTGGGTCCGATGAAGAAAATGAGAACTATCTCGGATATTGAAAGAAATCTTAAAGCTACACAAGCAAAACCCCTATCATGGAGGAAGCCTGATCCAAGCTCTAATTTGGGAATGAATTCATCCATTTTTGAGAATGACTATGTTGAGGGGTCTAACTACAACGAGTCAGTGCAGCCAGATTTGTGGAGACCT
TTATTTCCTCCATTTGCAAAGAAAAAACGGTCAAGTCGCATGAGACCTGAGAGGTATGAGACCTGAGAGGTTCGCGACACACTGGAAACTTTGTACTCGATGACACTATCTCTATTCTTTTTGAAGTATAGCTGGTGGTAGCATCTTAATGGCTTGTTCAAATATTGTAACAATTGGAAAACCTTTTCATGTTTCTATTA
AATCTTAAGATGCCTTTTGGGCTGTGGCTTTTTGATCCTAATTTTTGGTATTGGAGTACATGTTTTGTTCATATTAGACGGTATTTTTTTCCCTATAAATTGGCC
>TRINITY_DN116779_c0_g1_i6 from sample A1 / Example unspliced isoform:TGCGTGATCAGAGTCAGGGACTCAGGATTCGAACAGTAAACGTCGGCACAATCGTTCTGCAGCAATAAAACAACAACTGAACGTCTCAGGGCAAATTCCCAGTTCGATTCTCGACAGTCCAATCCCAATCCTTCTAGAAATCGCCGTGTCTTTCAGCACCGGGCTTCATTCATCCACGGATTATTTACAGGCCCACGGAT
TGTACGTGGTCTTTCGCGCAAGGTGTATGCACGAGCATGGAGGGCAATAGAAAGCCGTGTCTCAAAGAGTCTACGTCTCGGCAATCTGCAGCAACCCACCAACGTTCACCTACCAGCTACCCATTCCCGTTGCTGAAGCAGGGAAAATCTGGTCCTAATGCTATTCCAGTTTCAGCAAGTCAGGATCCGCATCTGCCAAT
TTCTAACGAAATTGTGCCATTTCAGGCAGAGCACTTTAGAGATCCAACTCTAATGCTTTTCCCATTTTTGAAGCAGGAAAATCCCGTCTCTAATGCTGTTCCGATATCAGCAAGATCAGATCCGCATCTGCCAATATCTAATGAACTCGTACCTTTTCAGGAAGTGCATTTCAGAGATGCCTCTTCATTGGAGTATATTC
CATGTACTGAAGTCTATAATCCTGATGGAAATAATATTGAAGAACAGGAGAATGGCTCTGTTTCAGATCCCATTGTTGTACAAGAAAGTCCATTTAATGCTTTATCTATGCCAAGAGACACTTCAAAACGGGTTTTACCTGCTGTAGGGGCATTCACCGTTCAGTGTGCTAGGTGCTTCAAATGGAGGTTAATTCCAACT
AAGGAGCAATATGAAGCTATTCGACAATGCATTCTGGAGGATCCTTGGGTCTGTGAAAATGCTTATCCTTGGCGTCCAGATGCATCATGTGATGATCCAGCTGATATTTCACAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCTCCTCCTGGGTGGGAACGACTTCTTGTCATTAGAGGTGA
AGGTGCCTCTAAGTTTGCTGATGTGTACTATGTCACTCCATCAGGGAAGAAGTTACGCTCAATGGTCGAGGTTGAAAGGTTCTTGATAGAAAATCCAGAGTATCTAGAGGCGGGAATAAATCTTTCACAATTCTCCTATCAAATTCCTAAGCCCCTTTATGATGGTTATGTAAGAAAACGCTCAGCCAGTGCTACATCTG
GGGCTGACGTGGGTCCGATGAAGAAAATGAGAACTATCTCGGATATTGAAAGAAATCTTAAAGCTACACAAGgtgtgcaagctagttggtagtctctcttaggtagagagttgtaagtggtaattttgtgaactcaaggggttttgtcttaattccggttataatacctcttgaatgctgtcttgtcaagataattaaag
ttctttaggatcttattgcaatttagcagatctgttatttaaacctctatatttgtcaattcagCAAAACCCCTATCATGGAGGAAGCCTGATCCAAGCTCTAATTTGGGAATGAATTCATCCATTTTTGAGAATGACTATGTTGAGGGGTCTAACTACAACGAGTCAGTGCAGCCAGGTATATCTTAGATTATAGTAAG
TGGTTGCTGTTTGTATCATGTATTCGCCGCACTAGCTGAGGAGTGATTCTTTCCGATCACACTGCAGATTTGTGGAGACCTTTATTTCCTCCATTTGCAAAGAAAAAACGGTCAAGTCGCATGAGACCTGAGAGGTATGAGACCTGAGAGGTTCGCGACACACTGGAAACTTTGTACTCGATGACACTATCTCTATTCTT
TTTGAAGTATAGCTGGTGGTAGCATCTTAATGGCTTGTTCAAATATTGTAACAATTGGAAAACCTTTTCATGTTTCTATTAAATCTTAAGATGCCTTTTGGGCTGTGGCTTTTTGATCCTAATTTTTGGTATTGGAGTACATGTTTTGTTCATATTAGACGGTATTTTTTTCCCTATAAATTGGCC
Intron 2 GTAATATTTT ... CTCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.05 | 84 | 5 | 32 |
| A2 | 18.33 | 49 | 6 | 16 |
| A3 | 22.67 | 58 | 11 | 23 |
| A4 | 17.65 | 28 | 4 | 8 |
| A5 | 23.29 | 28 | 5 | 12 |
| A6 | 16.13 | 130 | 20 | 30 |
| A7 | 18.01 | 148 | 23 | 42 |
| A8 | 18.58 | 149 | 16 | 52 |
| A9 | 20.36 | 131 | 18 | 49 |
| A10 | 16.01 | 118 | 12 | 33 |
>TRINITY_DN109134_c0_g1_i9 from sample A3 / Example spliced isoformGCTCCTCGCATTTCGCTCCCACAACATTTCCCAGATGCGTGATCAGAGTCAGGGACTCAGGATTCGAACAGTAAACGTCGGCACAATCGTTCTGCAGCAATAAAACAACAACTGAACGTCTCAGGGCAAATCCCCAGTTCGATTCTCGACAGTCCAATCCCAATCCTTCTAGAAATCGCCGTGTCTTTCAGCACCGGGCT
TCATTCATCCACGGATTATTTACAGGCCCACGGATTGTACGTGGTCTTTCGCGCAAGGTGTATGCACGAGCATGGAGGGCAATAGAAAGCCGTGTCTCAAAGAGTCTACGTCTCGGCAATCTGCAGCAACCCACCAACGTTCACCTACCAGCTACCCATTCCCGTTGCTGAAGCAGGGAAAATCTGGTCCTAATGCTATT
CCAGTTTCAGCAAGTCAGGATCCGCATCTGCCAATTTCTAACGAAATTGTGCCATTTCAGGCAGAGCACTTTAGAGATCCAACTCTAATGCTTTTCCCATTTTTGAAGCAGGAAAATCCCGTCTCTAATGCTGTTCCGATATCAGCAAGATCAGATCCGCATCTGCCAATATCTAATGAACTCGTACCTTTTCAGGAAGT
GCATTTCAGAGATGCCTCTTCATTGGAGTATATTCCATGTACTGAAGTCTATAATCCTGATGGAAATAATATTGAAGAACAGGAGAATGGCTCTGTTTCAGATCCCATTGTTGTACAAGAAAGTCCATTTAATGCTTTATCTATGCCAAGAGACACTTCAAAACGGGTTTTACCTGCTGTAGGGGCATTCACCGTTCAGT
GTGCTAGGTGCTTCAAATGGAGGTTAATTCCAACTAAGGAGCAATATGAAGCTATTCGACAATGCATTCTGGAGGATCCTTGGGTCTGTGAAAATGCTTATCCTTGGCGTCCAGATGCATCATGTGATGATCCAGCTGATATTTCACAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCTCCT
CCTGGGTGGGAACGACTTCTTGTCATTAGAGGTGAAGGTGCCTCTAAGTTTGCTGATGTGTACTATGTCACTCCATCAGGGAAGAAGTTACGCTCAATGGTCGAGGTTGAAAGGTTCTTGATAGAAAATCCAGAGTATCTAGAGGCGGGAATAAATCTTTCACAATTCTCCTATCAAATTCCTAAGCCCCTTTATGATGG
TTATGTAAGAAAACGCTCAGCCAGTGCTACATCTGGGGCTGACGTGGGTCCGATGAAGAAAATGAGAACTATCTCGGATATTGAAAGAAATCTTAAAGCTACACAAGGTGTGCAAGCTAGTTGGTAGTCTCTCTTAGGTAGAGAGTTGTAAGTGGTAATTTTGTGAACTCAAGGGGTTTTGTCTTAATTCCGGTTATAAT
ACCTCTTGAATGCTGTCTTGTCAAGATAATTAAAGTTCTTTAGGATCTTATTGCAATTTAGCAGATCTGTTATTTAAACCTCTATATTTGTCAATTCAGCAAAACCCCTATCATGGAGGAAGCCTGATCCAAGCTCTAATTTGGGAATGAATTCATCCATTTTTGAGAATGACTATGTTGAGGGGTCTAACTACAACGAG
TCAGTGCAGCCAGGTATATCTTAGATTATAGTAAGTGGTTGCTGTTTGTATCATGTATTCGCCGCACTAGCTGAGGAGTGATTCTTTCCGATCACACTGCAGATTTGTGGAGACCTTTATTTCCTCCATTTGCAAAGAAAAAACGGTCAAGTCGCATGAGACCTGAGAGGTATGAGACCTGAGAGGTTCGCGACACACTG
GAAACTTTGTACTCGATGACACTATCTCTATTCTTTTTGAAGTATAGCTGGTGGTAGCATCTTAATGGCTTGTTCAAATATTGTAACAATTGGAAAACCTTTTCATGTTTCTATTAAATCTTAAGATGCCTTTTGGGCTGTGGCTTTTTGATCCTAATTTTTGGTATTGGAGTACATGTTTTGTTCATATTAGACGGTAT
TTTTTTCCCTATAAATTGGCCTTTCGGTTAGATAGGGCGTTAGGTTCCAGTGTGCAGATGCTAACGCATCCATAAGATGTCCACTACAAATGGCACATCTTTAAAGGAATACTCACTTTGGAGCAGAACGCTGGGTTTTTTTGAAGCACGAGTACAGAACTGGAAAAGCTCTGAAAACAGGAAGTTTATCACTGCATGTT
ATGGTAGCAATAGCTAAAGCCTAAAATAAGTAGAAGTATCAAATGAGTTCTATGCGTTGTGAGCAGCATATCTTGTACAAAACATTGTCCCACTACAAATGGCACATCTTTA
>TRINITY_DN109134_c0_g1_i8 from sample A3 / Example unspliced isoform:CTTTCTGCAAAGATGATCCATGCTTTGGTAGCATGATTCCTCGTCTGTTGATCCATTAGATCATGGCCATGTGTTTCTCCTGGCTCCGTCGGTTTAGATTTATCCAGGTTTTAGGGTTTCAATTTATATGTATCATGTTTCTGGTCACTCCAGTGCGGCATTCAAACTTTCAAAACACCGTAGACGAAGGCAGTGGGCAA
TATCGTAGCACCGTAGACGAAGGCAGTGGGCAATATCGTAGCTCTCTTTACATACACACCCATCGTCCTCCTACATTGTTCAGACCAGTTTCCAACCCTTCATTATCTTTTTCATGTTTCATTTCGATCTGCTTACTCCTGAAAAGTTTCAGTATGGCGCTCGTTCTCCATCCTTCCAAGAAAAGTGCTGAGATTACATT
CGGCATCTATAAGCCGACCAACGGCTACGATATCGATGACGCACTGAGGCACATTAGGGCGGCCATCACCTCCGTCGAGCAGGCCGGTAGCGTCAAAGCAGCCATTCTTTCCATCCTCAATGGCTCATGGGTACTATTAATTAACCCTTCCCCTCCAGAGTATTCTCAGTTCTATTTACACAAGCAGCGTTTGTGATTAT
ACAGGTAGCAGTTTTCTGTGATTGGAGAGGCGCTGCACCAAAATCCTACACGATTTGAGCGAGGAGGCAACGGCCGTTCTCAGAAAAGTGGACTGCGAGAGCTTCCATTTGATCTTATCGGAGCCTAGGGAGGTGGTTTCGTCCGCCCGGCTATCAATCGGGGGAATCGTAAGCGTGCGGAGAATATACACGAACATCAA
GATGCAGGAGGTGCTCGCTTTCAGCTGCATGGCCGTGTCGAGGGCATACTCTGCATAGATAAAGGGGCTTCTTTCCTCCAACTTTTATAAGTCCGATGATGGGATGTTGATTATCGGATTGGACACATGGGACAACGCCGACTCTGCCTCTACTCTCTTGGATTCCTGCGGAGGTAGCCCCGTCCATGTACTGAAGTCTA
TGATCCTCATGGAAATAATATTGAAGAACAAGAGAATTGCTCTGTTTCAAATCCCATTGTTGTACAAGAAATTCCATTTAATGCTTTATCTATGCCGAGAGACACTTCAAGATGGGTTTTACCTGTTGTAGGGGCATTCACCGTTCGGTGTGCTTAGGGGCATTCACCGTTCAGTGTGCTAGGTGCTTCAAATGGAGGTT
AATTCCAACTAAGAGCAATATGAAGCTATTCGACAATGCATTCTGGAGGATCCTTGGGTCTGTGAAAATGCTTATCGTTCGCGTCCAGATGCATCATGCGATGATCTAGCTGACATTTCACAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCTCCTCCTGGGTGGGAACGACTTCTTGTCAT
TAGAGGTGAAGGTGCCTCTAAGTTTGCTGATGTGTACTATGTCACTCCATCAGGGAAGAAGTTACGCTCAATGGTCGAGGTTGAAAGgtaatattttaaatttattttcttagtgttaataatttgttatttgcatttgttcatcttaacctactttcatcttggggagttgttcaaacttcaatgttgttcaggtgttc
aaagtgttattgacacaatggaaattgtgattagccagccatgctatccaagcgataagcccagccaagatctgcatgcgaatgaaaatatttaaaaaaaaaatcaggccccatgttacatttgcatacaatgtccccatcaaaatgttgatctaatccgtttccagctgtttacaatgcccaactaataattgtatcac
ttagtctccgatcagagtgcaaaaatgatcgaggcaccaattaaaaaaattgtatttgatatgtattaaatatttatggtgcacgttcttaagtaattgttgaagtgattcgtcatgctttgagtatattatttgattcgtgctactcctctttgcagGTTCTTGATAGAAAATCCAGAGTATCTAGAGGCGGGAATAAA
TCTTTCACAATTCTCCTATCAAATTCCTAAGCCCCTTTATGATGGTTATGTAAGAAAACGCTCAGCCAGTGCTACATCTGGGGCTGACGTGGGTCCGATGAAGAAAATGAGAACTATCTCGGATATTGAAAGAAATCTTAAAGCTACACAAGGTGTGCAAGCTAGTTGGTAGTCTCTCTTAGGTAGAGAGTTGTAAGTGG
TAATTTTGTGAACTCAAGGGGTTTTGTCTTAATTCCGGTTATAATACCTCTTGAATGCTGTCTTGTCAAGATAATTAAAGTTCTTTAGGATCTTATTGCAATTTAGCAGATCTGTTATTTAAACCTCTATATTTGTCAATTCAGCAAAACCCCTATCATGGAGGAAGCCTGATCCAAGCTCTAATTTGGGAATGAATTCA
TCCATTTTTGAGAATGACTATGTTGAGGGGTCTAACTACAACGAGTCAGTGCAGCCAGGTATATCTTAGATTATAGTAAGTGGTTGCTGTTTGTATCATGTATTCGCCGCACTAGCTGAGGAGTGATTCTTTCCGATCACACTGCAGATTTGTGGAGACCTTTATTTCCTCCATTTGCAAAGAAAAAACGGTCAAGTCGC
ATGAGACCTGAGAGGTATGAGACCTGAGAGGTTCGCGACACACTGGAAACTTTGTACTCGATGACACTATCTCTATTCTTTTTGAAGTATAGCTGGTGGTAGCATCTTAATGGCTTGTTCAAATATTGTAACAATTGGAAAACCTTTTCATGTTTCTATTAAATCTTAAGATGCCTTTTGGGCTGTGGCTTTTTGATCCT
AATTTTTGGTATTGGAGTACATGTTTTGTTCATATTAGACGGTATTTTTTTCCCTATAAATTGGCCTTTCGGTTAGATAGGGCGTTAGGTTCCAGTGTGCAGATGCTAACGCATCCATAAGATGTCCACTACAAATGGCACATCTTTAAAGGAATACTCACTTTGGAGCAGAACGCTGGGTTTTTTTGAAGCACGAGTAC
AGAACTGGAAAAGCTCTGAAAACAGGAAGTTTATCACTGCATGTTATGGTAGCAATAGCTAAAGCCTAAAATAAGTAGAAGTATCAAATGAGTTCTATGCGTTGTGAGCAGCATATCTTGTACAAAACATTGTCCCACTACAAATGGCACATCTTTA
Intron 3 GTATATCTTA ... CACACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.61 | 19.8 | 23.6 | 24 |
| A2 | 49.48 | 30.8 | 29.3 | 31 |
| A3 | 56.06 | 20.9 | 26.3 | 27 |
| A4 | 62.27 | 21 | 27.3 | 42 |
| A5 | 58.43 | 10.8 | 13.3 | 17 |
| A6 | 66.99 | 87.1 | 160.2 | 193 |
| A7 | 60.79 | 64.4 | 88.6 | 111 |
| A8 | 56.25 | 101.1 | 125 | 135 |
| A9 | 66.17 | 49 | 95.6 | 96 |
| A10 | 64.48 | 45.9 | 96.7 | 70 |
>TRINITY_DN116779_c0_g1_i5 from sample A1 / Example spliced isoformTGCGTGATCAGAGTCAGGGACTCAGGATTCGAACAGTAAACGTCGGCACAATCGTTCTGCAGCAATAAAACAACAACTGAACGTCTCAGGGCAAATTCCCAGTTCGATTCTCGACAGTCCAATCCCAATCCTTCTAGAAATCGCCGTGTCTTTCAGCACCGGGCTTCATTCATCCACGGATTATTTACAGGCCCACGGAT
TGTACGTGGTCTTTCGCGCAAGGTGTATGCACGAGCATGGAGGGCAATAGAAAGCCGTGTCTCAAAGAGTCTACGTCTCGGCAATCTGCAGCAACCCACCAACGTTCACCTACCAGCTACCCATTCCCGTTGCTGAAGCAGGGAAAATCTGGTCCTAATGCTATTCCAGTTTCAGCAAGTCAGGATCCGCATCTGCCAAT
TTCTAACGAAATTGTGCCATTTCAGGCAGAGCACTTTAGAGATCCAACTCTAATGCTTTTCCCATTTTTGAAGCAGGAAAATCCCGTCTCTAATGCTGTTCCGATATCAGCAAGATCAGATCCGCATCTGCCAATATCTAATGAACTCGTACCTTTTCAGGAAGTGCATTTCAGAGATGCCTCTTCATTGGAGTATATTC
CATGTACTGAAGTCTATAATCCTGATGGAAATAATATTGAAGAACAGGAGAATGGCTCTGTTTCAGATCCCATTGTTGTACAAGAAAGTCCATTTAATGCTTTATCTATGCCAAGAGACACTTCAAAACGGGTTTTACCTGCTGTAGGGGCATTCACCGTTCAGTGTGCTAGGTGCTTCAAATGGAGGTTAATTCCAACT
AAGGAGCAATATGAAGCTATTCGACAATGCATTCTGGAGGATCCTTGGGTCTGTGAAAATGCTTATCCTTGGCGTCCAGATGCATCATGTGATGATCCAGCTGATATTTCACAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCTCCTCCTGGGTGGGAACGACTTCTTGTCATTAGAGGTGA
AGGTGCCTCTAAGTTTGCTGATGTGTACTATGTCACTCCATCAGGGAAGAAGTTACGCTCAATGGTCGAGGTTGAAAGGTTCTTGATAGAAAATCCAGAGTATCTAGAGGCGGGAATAAATCTTTCACAATTCTCCTATCAAATTCCTAAGCCCCTTTATGATGGTTATGTAAGAAAACGCTCAGCCAGTGCTACATCTG
GGGCTGACGTGGGTCCGATGAAGAAAATGAGAACTATCTCGGATATTGAAAGAAATCTTAAAGCTACACAAGCAAAACCCCTATCATGGAGGAAGCCTGATCCAAGCTCTAATTTGGGAATGAATTCATCCATTTTTGAGAATGACTATGTTGAGGGGTCTAACTACAACGAGTCAGTGCAGCCAGATTTGTGGAGACCT
TTATTTCCTCCATTTGCAAAGAAAAAACGGTCAAGTCGCATGAGACCTGAGAGGTATGAGACCTGAGAGGTTCGCGACACACTGGAAACTTTGTACTCGATGACACTATCTCTATTCTTTTTGAAGTATAGCTGGTGGTAGCATCTTAATGGCTTGTTCAAATATTGTAACAATTGGAAAACCTTTTCATGTTTCTATTA
AATCTTAAGATGCCTTTTGGGCTGTGGCTTTTTGATCCTAATTTTTGGTATTGGAGTACATGTTTTGTTCATATTAGACGGTATTTTTTTCCCTATAAATTGGCC
>TRINITY_DN116779_c0_g1_i2 from sample A1 / Example unspliced isoform:TGCGTGATCAGAGTCAGGGACTCAGGATTCGAACAGTAAACGTCGGCACAATCGTTCTGCAGCAATAAAACAACAACTGAACGTCTCAGGGCAAATTCCCAGTTCGATTCTCGACAGTCCAATCCCAATCCTTCTAGAAATCGCCGTGTCTTTCAGCACCGGGCTTCATTCATCCACGGATTATTTACAGGCCCACGGAT
TGTACGTGGTCTTTCGCGCAAGGTGTATGCACGAGCATGGAGGGCAATAGAAAGCCGTGTCTCAAAGAGTCTACGTCTCGGCAATCTGCAGCAACCCACCAACGTTCACCTACCAGCTACCCATTCCCGTTGCTGAAGCAGGGAAAATCTGGTCCTAATGCTATTCCAGTTTCAGCAAGTCAGGATCCGCATCTGCCAAT
TTCTAACGAAATTGTGCCATTTCAGGCAGAGCACTTTAGAGATCCAACTCTAATGCTTTTCCCATTTTTGAAGCAGGAAAATCCCGTCTCTAATGCTGTTCCGATATCAGCAAGATCAGATCCGCATCTGCCAATATCTAATGAACTCGTACCTTTTCAGGAAGTGCATTTCAGAGATGCCTCTTCATTGGAGTATATTC
CATGTACTGAAGTCTATAATCCTGATGGAAATAATATTGAAGAACAGGAGAATGGCTCTGTTTCAGATCCCATTGTTGTACAAGAAAGTCCATTTAATGCTTTATCTATGCCAAGAGACACTTCAAAACGGGTTTTACCTGCTGTAGGGGCATTCACCGTTCAGTGTGCTAGGTGCTTCAAATGGAGGTTAATTCCAACT
AAGGAGCAATATGAAGCTATTCGACAATGCATTCTGGAGGATCCTTGGGTCTGTGAAAATGCTTATCCTTGGCGTCCAGATGCATCATGTGATGATCCAGCTGATATTTCACAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCTCCTCCTGGGTGGGAACGACTTCTTGTCATTAGAGGTGA
AGGTGCCTCTAAGTTTGCTGATGTGTACTATGTCACTCCATCAGGGAAGAAGTTACGCTCAATGGTCGAGGTTGAAAGGTTCTTGATAGAAAATCCAGAGTATCTAGAGGCGGGAATAAATCTTTCACAATTCTCCTATCAAATTCCTAAGCCCCTTTATGATGGTTATGTAAGAAAACGCTCAGCCAGTGCTACATCTG
GGGCTGACGTGGGTCCGATGAAGAAAATGAGAACTATCTCGGATATTGAAAGAAATCTTAAAGCTACACAAGCAAAACCCCTATCATGGAGGAAGCCTGATCCAAGCTCTAATTTGGGAATGAATTCATCCATTTTTGAGAATGACTATGTTGAGGGGTCTAACTACAACGAGTCAGTGCAGCCAGgtatatcttagatt
atagtaagtggttgctgtttgtatcatgtattcgccgcactagctgaggagtgattctttccgatcacactgcagATTTGTGGAGACCTTTATTTCCTCCATTTGCAAAGAAAAAACGGTCAAGTCGCATGAGACCTGAGAGGTATGAGACCTGAGAGGTTCGCGACACACTGGAAACTTTGTACTCGATGACACTATCT
CTATTCTTTTTGAAGTATAGCTGGTGGTAGCATCTTAATGGCTTGTTCAAATATTGTAACAATTGGAAAACCTTTTCATGTTTCTATTAAATCTTAAGATGCCTTTTGGGCTGTGGCTTTTTGATCCTAATTTTTGGTATTGGAGTACATGTTTTGTTCATATTAGACGGTATTTTTTTCCCTATAAATTGGCC
Intron 4 GTAATTTTGT ... GTCAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.78 | 15.2 | 19.8 | 18.3 |
| A2 | 71.15 | 8.3 | 22 | 19 |
| A3 | 51.46 | 14.2 | 16 | 14 |
| A4 | 59.38 | 3.8 | 8 | 3.2 |
| A5 | 52.62 | 3 | 3 | 3.3 |
| A6 | 65.73 | 42.3 | 84 | 77.7 |
| A7 | 75.6 | 20.8 | 86 | 42.2 |
| A8 | 61.38 | 36 | 61 | 51 |
| A9 | 70.73 | 20 | 49 | 47 |
| A10 | 61.9 | 28.2 | 50 | 40 |
>TRINITY_DN116779_c0_g1_i7 from sample A1 / Example spliced isoformTGCGTGATCAGAGTCAGGGACTCAGGATTCGAACAGTAAACGTCGGCACAATCGTTCTGCAGCAATAAAACAACAACTGAACGTCTCAGGGCAAATTCCCAGTTCGATTCTCGACAGTCCAATCCCAATCCTTCTAGAAATCGCCGTGTCTTTCAGCACCGGGCTTCATTCATCCACGGATTATTTACAGGCCCACGGAT
TGTACGTGGTCTTTCGCGCAAGGTGTATGCACGAGCATGGAGGGCAATAGAAAGCCGTGTCTCAAAGAGTCTACGTCTCGGCAATCTGCAGCAACCCACCAACGTTCACCTACCAGCTACCCATTCCCGTTGCTGAAGCAGGGAAAATCTGGTCCTAATGCTATTCCAGTTTCAGCAAGTCAGGATCCGCATCTGCCAAT
TTCTAACGAAATTGTGCCATTTCAGGCAGAGCACTTTAGAGATCCAACTCTAATGCTTTTCCCATTTTTGAAGCAGGAAAATCCCGTCTCTAATGCTGTTCCGATATCAGCAAGATCAGATCCGCATCTGCCAATATCTAATGAACTCGTACCTTTTCAGGAAGTGCATTTCAGAGATGCCTCTTCATTGGAGTATATTC
CATGTACTGAAGTCTATAATCCTGATGGAAATAATATTGAAGAACAGGAGAATGGCTCTGTTTCAGATCCCATTGTTGTACAAGAAAGTCCATTTAATGCTTTATCTATGCCAAGAGACACTTCAAAACGGGTTTTACCTGCTGTAGGGGCATTCACCGTTCAGTGTGCTAGGTGCTTCAAATGGAGGTTAATTCCAACT
AAGGAGCAATATGAAGCTATTCGACAATGCATTCTGGAGGATCCTTGGGTCTGTGAAAATGCTTATCCTTGGCGTCCAGATGCATCATGTGATGATCCAGCTGATATTTCACAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCTCCTCCTGGGTGGGAACGACTTCTTGTCATTAGAGGTGA
AGGTGCCTCTAAGTTTGCTGATGTGTACTATGTCACTCCATCAGGGAAGAAGTTACGCTCAATGGTCGAGGTTGAAAGGTTCTTGATAGAAAATCCAGAGTATCTAGAGGCGGGAATAAATCTTTCACAATTCTCCTATCAAATTCCTAAGCCCCTTTATGATGGTTATGTAAGAAAACGCTCAGCCAGTGCTACATCTG
GGGCTGACGTGGGTCCGATGAAGAAAATGAGAACTATCTCGGATATTGAAAGAAATCTTAAAGCTACACAAGGTGTGCAAGCTAGTTGGTAGTCTCTCTTAGGTAGAGAGTTGTAAGTGCAAAACCCCTATCATGGAGGAAGCCTGATCCAAGCTCTAATTTGGGAATGAATTCATCCATTTTTGAGAATGACTATGTTG
AGGGGTCTAACTACAACGAGTCAGTGCAGCCAG
>TRINITY_DN116779_c0_g1_i6 from sample A1 / Example unspliced isoform:TGCGTGATCAGAGTCAGGGACTCAGGATTCGAACAGTAAACGTCGGCACAATCGTTCTGCAGCAATAAAACAACAACTGAACGTCTCAGGGCAAATTCCCAGTTCGATTCTCGACAGTCCAATCCCAATCCTTCTAGAAATCGCCGTGTCTTTCAGCACCGGGCTTCATTCATCCACGGATTATTTACAGGCCCACGGAT
TGTACGTGGTCTTTCGCGCAAGGTGTATGCACGAGCATGGAGGGCAATAGAAAGCCGTGTCTCAAAGAGTCTACGTCTCGGCAATCTGCAGCAACCCACCAACGTTCACCTACCAGCTACCCATTCCCGTTGCTGAAGCAGGGAAAATCTGGTCCTAATGCTATTCCAGTTTCAGCAAGTCAGGATCCGCATCTGCCAAT
TTCTAACGAAATTGTGCCATTTCAGGCAGAGCACTTTAGAGATCCAACTCTAATGCTTTTCCCATTTTTGAAGCAGGAAAATCCCGTCTCTAATGCTGTTCCGATATCAGCAAGATCAGATCCGCATCTGCCAATATCTAATGAACTCGTACCTTTTCAGGAAGTGCATTTCAGAGATGCCTCTTCATTGGAGTATATTC
CATGTACTGAAGTCTATAATCCTGATGGAAATAATATTGAAGAACAGGAGAATGGCTCTGTTTCAGATCCCATTGTTGTACAAGAAAGTCCATTTAATGCTTTATCTATGCCAAGAGACACTTCAAAACGGGTTTTACCTGCTGTAGGGGCATTCACCGTTCAGTGTGCTAGGTGCTTCAAATGGAGGTTAATTCCAACT
AAGGAGCAATATGAAGCTATTCGACAATGCATTCTGGAGGATCCTTGGGTCTGTGAAAATGCTTATCCTTGGCGTCCAGATGCATCATGTGATGATCCAGCTGATATTTCACAAGATAAGAGCAGACTTTGGGCAATTGACAAGCCAAATATTTCTCAGCCTCCTCCTGGGTGGGAACGACTTCTTGTCATTAGAGGTGA
AGGTGCCTCTAAGTTTGCTGATGTGTACTATGTCACTCCATCAGGGAAGAAGTTACGCTCAATGGTCGAGGTTGAAAGGTTCTTGATAGAAAATCCAGAGTATCTAGAGGCGGGAATAAATCTTTCACAATTCTCCTATCAAATTCCTAAGCCCCTTTATGATGGTTATGTAAGAAAACGCTCAGCCAGTGCTACATCTG
GGGCTGACGTGGGTCCGATGAAGAAAATGAGAACTATCTCGGATATTGAAAGAAATCTTAAAGCTACACAAGGTGTGCAAGCTAGTTGGTAGTCTCTCTTAGGTAGAGAGTTGTAAGTGgtaattttgtgaactcaaggggttttgtcttaattccggttataatacctcttgaatgctgtcttgtcaagataattaaag
ttctttaggatcttattgcaatttagcagatctgttatttaaacctctatatttgtcaattcagCAAAACCCCTATCATGGAGGAAGCCTGATCCAAGCTCTAATTTGGGAATGAATTCATCCATTTTTGAGAATGACTATGTTGAGGGGTCTAACTACAACGAGTCAGTGCAGCCAGGTATATCTTAGATTATAGTAAG
TGGTTGCTGTTTGTATCATGTATTCGCCGCACTAGCTGAGGAGTGATTCTTTCCGATCACACTGCAGATTTGTGGAGACCTTTATTTCCTCCATTTGCAAAGAAAAAACGGTCAAGTCGCATGAGACCTGAGAGGTATGAGACCTGAGAGGTTCGCGACACACTGGAAACTTTGTACTCGATGACACTATCTCTATTCTT
TTTGAAGTATAGCTGGTGGTAGCATCTTAATGGCTTGTTCAAATATTGTAACAATTGGAAAACCTTTTCATGTTTCTATTAAATCTTAAGATGCCTTTTGGGCTGTGGCTTTTTGATCCTAATTTTTGGTATTGGAGTACATGTTTTGTTCATATTAGACGGTATTTTTTTCCCTATAAATTGGCC