sp|O80662|TCHQD_ARATH ----> Glutathione S-transferase TCHQD
Intron 1 GTGTGCTGTA ... CTTCGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 1 | 3 | 0 |
| A2 | 0 | 2 | 0 | 0 |
| A3 | 0 | 6 | 0 | 1 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 33.33 | 6 | 3 | 0 |
| A7 | 71.43 | 4 | 10 | 0 |
| A8 | 71.43 | 2 | 5 | 0 |
| A9 | 81.25 | 3 | 13 | 5 |
| A10 | 85.71 | 2 | 12 | 1 |
>TRINITY_DN31973_c0_g1_i1 from sample A9 / Example spliced isoformCTTCAATCTCGAAGCGATTTGGCTGCTCATGGAAACAGACCAAAGCCTTCAGAGTTGGAGAAGATGTGGAGCTTTTAATGAGATATTATGTATGCTGCCTTCGTCCACTAACAGCAGCAATGGCGATTTTCTGTTGAAGTCCAGCCGAATTGTGGCCTCGACTCTGTAAGCGTAAGTGAAGTTTTTGTGCTTATTGGGCG
GTCAACAAGATCTAGCAGCTATATTTGAGACTCTTACCTGATCACTCACAACGTCATTTGATATTTCTGATTAACTGGAGCACTGAGGCTTCTCCAGTAGTTGAAAGCATCAAACTGCATCTTCATAACAGATTATATTCTGAAATAAAATATCTGTCATCTACCTCTGAGATTAATTTACCAGCCGCTGTTTTCCCTTT
CACATTGCTATACGCATCACATTAATTGTTGTCCAAAACGGTAGTCAGAAGCAGTGCTGATTTATCAGTTGCAAGGTCGAATTACAAGGCATTCAAAATGACGCAATTCTATTACCATCCCCTCTCACTTGACTGCCAAAAGGTATGCTTGGTGATGGAAGAGAAGAATATAAAGTATATACCGCACCTTGTAAATCCTT
TCAAAGCAAGGAATTTGGATGCAGAGTTTTTCAGGCAAAGTCCTAATGGTAGCATTCCTGTACTAGTTACTGAGGATCAAGTTTTCTGTGACTCATTGACTATGATTCGGTACCTTTCCAAGATTGGGAAGCCTTTGGGCAATAAAAGGGTAGATCAGAGCAAGGTCCAGGAGTGGCTAGAGAAGATTGATACATGGGAC
TCGAAACTCTTTACACAAAATCACTGTCCAAGTGATCATGCTCTTCATTTTTATAGCAAATTTAAAAGGCAAGTTGCAATTTCTCGTCTTGTGGAGAATCCTGATTTGGCAGAAAAGTATCACAATAAACTTCAATCCATGCATGCCATGGAGGAAATGTTGAAGAATCAGGAGGCTTTGGCTTCGAACAAGAATGAACT
TATAAACCTACTCAATGATGCTGAGAAACAGCTGACAGATACAGAGTTTTTGGCTGGAGCTGAGTTTTCTGTGGCAGATTGTGCATTTATCCCCTTGCTTGCCAGAATAGAGGTTTTGAAGTTGGACAAAGAGTATTTTCGTAAGCGCCCTCGTCTTTTATATTACTTCGAGCAGATGAAGCAACGGCCAAGCTATCAGA
CTGTACTAGGTCCATATTCCACCACTTTTGGAAATATGAAAATTTTATTGCCCTCTATCTGTAATATGAGCATCAGGAGATTGTTGCACAAATATTAGTATGCATAGGATAATTTTGTTGCACTCTATCTGTAATATGAGCATCAGGAGGTTGTTGTATGGACATTAATATGCGTAGGATTGTTTTGTTCTGTATAGAGG
CTATCTAATAGCCTCTACACCTTTCATGACCAAGCAAGCAAGGACTACAATAGCTATAGTCGTGAAGCTTGTGAATGGCCTATTAAGACTTTTATGCCTGCAGTAGAAATTCAGCGAGCTCTCTCGTAAATAGATTCAAGGCAGTCTAGAATATTGTAGTAGTCTTAGCTGTTGGTTAAGCCATTGCAACCGTTGATTAT
TTATTTTTCTATGGAAACGTTCAATTGTCTTTGACAGCATG
>TRINITY_DN31973_c0_g1_i4 from sample A9 / Example unspliced isoform:CTTCAATCTCGAAGCGATTTGGCTGCTCATGGAAACAGACCAAAGCCTTCAGAGTTGGAGAAGATGTGGAGCTTTTAATGAGATATTATGTATGCTGCCTTCGTCCACTAACAGgtgtgctgtaggactctctccacagtatagaacgcaatcttttcaatttaactctctgaacatggcaatcaatactgtctacacaa
tccgggatttttgtttcttccaacagtcaaaatatatcaaacgcgaaggttcgatcgcttataatttgtaagtcctgaatctcacattttcccgtttttcttcgagcagCAGCAATGGCGATTTTCTGTTGAAGTCCAGCCGAATTGTGGCCTCGACTCTGTAAGCGTAAGTGAAGTTTTTGTGCTTATTGGGCGGTCAA
CAAGATCTAGCAGCTATATTTGAGACTCTTACCTGATCACTCACAACGTCATTTGATATTTCTGATTAACTGGAGCACTGAGGCTTCTCCAGTAGTTGAAAGCATCAAACTGCATCTTCATAACAGATTATATTCTGAAATAAAATATCTGTCATCTACCTCTGAGATTAATTTACCAGCCGCTGTTTTCCCTTTCACAT
TGCTATACGCATCACATTAATTGTTGTCCAAAACGGTAGTCAGAAGCAGTGCTGATTTATCAGTTGCAAGGTCGAATTACAAGGCATTCAAAATGACGCAATTCTATTACCATCCCCTCTCACTTGACTGCCAAAAGGTATGCTTGGTGATGGAAGAGAAGAATATAAAGTATATACCGCACCTTGTAAATCCTTTCAAA
GCAAGGAATTTGGATGCAGAGTTTTTCAGGCAAAGTCCTAATGGTAGCATTCCTGTACTAGTTACTGAGGATCAAGTTTTCTGTGACTCATTGACTATGATTCGGTACCTTTCCAAGATTGGGAAGCCTTTGGGCAATAAAAGGGTAGATCAGAGCAAGGTCCAGGAGTGGCTAGAGAAGATTGATACATGGGACTCGAA
ACTCTTTACACAAAATCACTGTCCAAGTGATCATGCTCTTCATTTTTATAGCAAATTTAAAAGGCAAGTTGCAATTTCTCGTCTTGTGGAGAATCCTGATTTGGCAGAAAAGTATCACAATAAACTTCAATCCATGCATGCCATGGAGGAAATGTTGAAGAATCAGGAGGCTTTGGCTTCGAACAAGAATGAACTTATAA
ACCTACTCAATGATGCTGAGAAACAGCTGACAGATACAGAGTTTTTGGCTGGAGCTGAGTTTTCTGTGGCAGATTGTGCATTTATCCCCTTGCTTGCCAGAATAGAGGTTTTGAAGTTGGACAAAGAGTATTTTCGTAAGCGCCCTCGTCTTTTATATTACTTCGAGCAGATGAAGCAACGGCCAAGCTATCAGACTGTA
CTAGGTCCATATTCCACCACTTTTGGAAATATGAAAATTTTATTGCCCTCTATCTGTAATATGAGCATCAGGAGATTGTTGCACAAATATTAGTATGCATAGGATAATTTTGTTGCACTCTATCTGTAATATGAGCATCAGGAGGTTGTTGTATGGACATTAATATGCGTAGGATTGTTTTGTTCTGTATAGAGGCTATC
TAATAGCCTCTACACCTTTCATGACCAAGCAAGCAAGGACTACAATAGCTATAGTCGTGAAGCTTGTGAATGGCCTATTAAGACTTTTATGCCTGCAGTAGAAATTCAGCGAGCTCTCTCGTAAATAGATTCAAGGCAGTCTAGAATATTGTAGTAGTCTTAGCTGTTGGTTAAGCCATTGCAACCGTTGATTATTTATT
TTTCTATGGAAACGTTCAATTGTCTTTGACAGCATG
Intron 2 GTCTTGTATA ... GCATCTGAAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.3 | 3.5 | 2 | 1 |
| A2 | -1 | 1 | 0 | 0 |
| A3 | 19.64 | 4.5 | 0 | 2 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 48.48 | 4.5 | 5 | 2 |
| A7 | 38.09 | 5 | 1 | 5 |
| A8 | 37.5 | 2 | 1 | 1 |
| A9 | 28.57 | 5 | 2 | 2 |
| A10 | 26.13 | 8.5 | 0 | 6 |
>TRINITY_DN31973_c0_g1_i1 from sample A9 / Example spliced isoformCTTCAATCTCGAAGCGATTTGGCTGCTCATGGAAACAGACCAAAGCCTTCAGAGTTGGAGAAGATGTGGAGCTTTTAATGAGATATTATGTATGCTGCCTTCGTCCACTAACAGCAGCAATGGCGATTTTCTGTTGAAGTCCAGCCGAATTGTGGCCTCGACTCTGTAAGCGTAAGTGAAGTTTTTGTGCTTATTGGGCG
GTCAACAAGATCTAGCAGCTATATTTGAGACTCTTACCTGATCACTCACAACGTCATTTGATATTTCTGATTAACTGGAGCACTGAGGCTTCTCCAGTAGTTGAAAGCATCAAACTGCATCTTCATAACAGATTATATTCTGAAATAAAATATCTGTCATCTACCTCTGAGATTAATTTACCAGCCGCTGTTTTCCCTTT
CACATTGCTATACGCATCACATTAATTGTTGTCCAAAACGGTAGTCAGAAGCAGTGCTGATTTATCAGTTGCAAGGTCGAATTACAAGGCATTCAAAATGACGCAATTCTATTACCATCCCCTCTCACTTGACTGCCAAAAGGTATGCTTGGTGATGGAAGAGAAGAATATAAAGTATATACCGCACCTTGTAAATCCTT
TCAAAGCAAGGAATTTGGATGCAGAGTTTTTCAGGCAAAGTCCTAATGGTAGCATTCCTGTACTAGTTACTGAGGATCAAGTTTTCTGTGACTCATTGACTATGATTCGGTACCTTTCCAAGATTGGGAAGCCTTTGGGCAATAAAAGGGTAGATCAGAGCAAGGTCCAGGAGTGGCTAGAGAAGATTGATACATGGGAC
TCGAAACTCTTTACACAAAATCACTGTCCAAGTGATCATGCTCTTCATTTTTATAGCAAATTTAAAAGGCAAGTTGCAATTTCTCGTCTTGTGGAGAATCCTGATTTGGCAGAAAAGTATCACAATAAACTTCAATCCATGCATGCCATGGAGGAAATGTTGAAGAATCAGGAGGCTTTGGCTTCGAACAAGAATGAACT
TATAAACCTACTCAATGATGCTGAGAAACAGCTGACAGATACAGAGTTTTTGGCTGGAGCTGAGTTTTCTGTGGCAGATTGTGCATTTATCCCCTTGCTTGCCAGAATAGAGGTTTTGAAGTTGGACAAAGAGTATTTTCGTAAGCGCCCTCGTCTTTTATATTACTTCGAGCAGATGAAGCAACGGCCAAGCTATCAGA
CTGTACTAGGTCCATATTCCACCACTTTTGGAAATATGAAAATTTTATTGCCCTCTATCTGTAATATGAGCATCAGGAGATTGTTGCACAAATATTAGTATGCATAGGATAATTTTGTTGCACTCTATCTGTAATATGAGCATCAGGAGGTTGTTGTATGGACATTAATATGCGTAGGATTGTTTTGTTCTGTATAGAGG
CTATCTAATAGCCTCTACACCTTTCATGACCAAGCAAGCAAGGACTACAATAGCTATAGTCGTGAAGCTTGTGAATGGCCTATTAAGACTTTTATGCCTGCAGTAGAAATTCAGCGAGCTCTCTCGTAAATAGATTCAAGGCAGTCTAGAATATTGTAGTAGTCTTAGCTGTTGGTTAAGCCATTGCAACCGTTGATTAT
TTATTTTTCTATGGAAACGTTCAATTGTCTTTGACAGCATG
>TRINITY_DN31973_c0_g1_i2 from sample A9 / Example unspliced isoform:CTTCAATCTCGAAGCGATTTGGCTGCTCATGGAAACAGACCAAAGCCTTCAGAGTTGGAGAAGATGTGGAGCTTTTAATGAGATATTATGTATGCTGCCTTCGTCCACTAACAGCAGCAATGGCGATTTTCTGTTGAAGTCCAGCCGAATTGTGGCCTCgtcttgtatagctctttttagggacgtttctttcagaggac
catttttgtatccaacttgtagattttgtagaatattcaaggatttgtagtgcatctgaagGACTCTGTAAGCGTAAGTGAAGTTTTTGTGCTTATTGGGCGGTCAACAAGATCTAGCAGCTATATTTGAGACTCTTACCTGATCACTCACAACGTCATTTGATATTTCTGATTAACTGGAGCACTGAGGCTTCTCCAGT
AGTTGAAAGCATCAAACTGCATCTTCATAACAGATTATATTCTGAAATAAAATATCTGTCATCTACCTCTGAGATTAATTTACCAGCCGCTGTTTTCCCTTTCACATTGCTATACGCATCACATTAATTGTTGTCCAAAACGGTAGTCAGAAGCAGTGCTGATTTATCAGTTGCAAGGTCGAATTACAAGGCATTCAAAA
TGACGCAATTCTATTACCATCCCCTCTCACTTGACTGCCAAAAGGTATGCTTGGTGATGGAAGAGAAGAATATAAAGTATATACCGCACCTTGTAAATCCTTTCAAAGCAAGGAATTTGGATGCAGAGTTTTTCAGGCAAAGTCCTAATGGTAGCATTCCTGTACTAGTTACTGAGGATCAAGTTTTCTGTGACTCATTG
ACTATGATTCGGTACCTTTCCAAGATTGGGAAGCCTTTGGGCAATAAAAGGGTAGATCAGAGCAAGGTCCAGGAGTGGCTAGAGAAGATTGATACATGGGACTCGAAACTCTTTACACAAAATCACTGTCCAAGTGATCATGCTCTTCATTTTTATAGCAAATTTAAAAGGCAAGTTGCAATTTCTCGTCTTGTGGAGAA
TCCTGATTTGGCAGAAAAGTATCACAATAAACTTCAATCCATGCATGCCATGGAGGAAATGTTGAAGAATCAGGAGGCTTTGGCTTCGAACAAGAATGAACTTATAAACCTACTCAATGATGCTGAGAAACAGCTGACAGATACAGAGTTTTTGGCTGGAGCTGAGTTTTCTGTGGCAGATTGTGCATTTATCCCCTTGC
TTGCCAGAATAGAGGTTTTGAAGTTGGACAAAGAGTATTTTCGTAAGCGCCCTCGTCTTTTATATTACTTCGAGCAGATGAAGCAACGGCCAAGCTATCAGACTGTACTAGGTCCATATTCCACCACTTTTGGAAATATGAAAATTTTATTGCCCTCTATCTGTAATATGAGCATCAGGAGATTGTTGCACAAATATTAG
TATGCATAGGATAATTTTGTTGCACTCTATCTGTAATATGAGCATCAGGAGGTTGTTGTATGGACATTAATATGCGTAGGATTGTTTTGTTCTGTATAGAGGCTATCTAATAGCCTCTACACCTTTCATGACCAAGCAAGCAAGGACTACAATAGCTATAGTCGTGAAGCTTGTGAATGGCCTATTAAGACTTTTATGCC
TGCAGTAGAAATTCAGCGAGCTCTCTCGTAAATAGATTCAAGGCAGTCTAGAATATTGTAGTAGTCTTAGCTGTTGGTTAAGCCATTGCAACCGTTGATTATTTATTTTTCTATGGAAACGTTCAATTGTCTTTGACAGCATG