sp|F4IDC2|SWA2_ARATH ----> Protein SLOW WALKER 2
Intron 1 GTTATTGGAG ... ATTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.95 | 116 | 52 | 13 |
| A2 | 26.6 | 69 | 25 | 21 |
| A3 | 34.55 | 72 | 38 | 10 |
| A4 | 24.72 | 67 | 22 | 10 |
| A5 | 32 | 34 | 16 | 15 |
| A6 | 22.58 | 24 | 7 | 0 |
| A7 | 25.51 | 73 | 25 | 3 |
| A8 | 20.83 | 19 | 5 | 0 |
| A9 | 15.31 | 83 | 15 | 0 |
| A10 | 18.46 | 53 | 12 | 0 |
>TRINITY_DN119093_c9_g2_i6 from sample A1 / Example spliced isoformGGCGTACGTCCAAAATATAGAGATTACACGACCTACATATCATTACATTTTCTAGCCTGTGTTATATCTAGCGCCTCGACGCCGAGGAGCCCTGAGTGATCTCGGCCTCAGTCGGTGATCAAATCAATCGAAGAAACGAACAGTAAATCAAAGCGATGGGGGCCTTCAAAGCCTCACAGTCAGAACCCGCCCCTCAAAAG
ACAAAAAATGCTAAAGTAGACGTCAATTCTCTGAAGGCCGAAGTGGCATCCTTCGCTTCTTCTCTCGGCCTGGCAGGGATCTCTTCTGCTCAAAATGCCGGCTTCAATGACGCCGATTTTCAGAAAAAAGGGCCTATTAAACCCTCAAAAACAGCGAAAAATCCCCCATCAAAACAATCTGCAAAGCCCAGGGAACTTAA
AACGGAAAAGAATGATTCGAAACCTGGTAGGTTTAAAGCCTTCAAGGGTAAACGAAATCACGTAGAGGAAGCCAAAGGTCCTCTAAAAGGTCACGGTCCTTTACATGCAGCCGAGAATGACACAGTCGGCCAAAATAACGGCGCCGCCAAAAAACTTCCGAAATTGCCACTGATGAAGCCGAGCTCATTGTCGAGCCCGT
GGCATGCGGACGCAGCTAGCGTCGAAGCAAAATTAGTTCCCACAGATGCCAAATCGGCTGCTCATTTAACCAAGCCAGTATGGGAAGCTTTGCTGCAGACGAAACGCCAGCTGGCTCAGCGGTTGATGGATCAGTACGTTTTGGAGTACGAGATTTCGAGAGGAAAGAGTGCGGATATGCGCATGGTGTCCATGGCGCAG
AAGTCGGGGACGACGGCCGATAAAGTGGCAGCCATTACAGTTCTTGTGCAGGATAATCCACTTGCCAACTTAAAGGCCCTTGACGCCATTCTCGGAATGGTGACATCTAAGGTAGGTAAGCGCCATGCAGGTGTTGGTATTGATGCACTGAAGGAGTTGTTTTTTATCAGTTTGCTGCCAGATAGGAAACTGAAGTATTT
TGGCCAGCAACCTCTCCATGTTCTCTCAGAATCAAAGGATGGAAATTCACTTCTTCTGTTTTGGTATTGGGAAGATTGTCTAAAGCACAGGTATGAGCACTTTGTGGTTGCATTGGAGGATGCTTCCAAAGATACATTACCTTTCTTGAAAGACAAAGCCTTGAAGACAATGTTTGATCTTCTTAAGAATAAACCTGAAC
AAGAACGCAAGCTCCTTTCAATGCTTGTGAACAAGCTTGGCGACCCGGAAAGGAAAGTAGCCTCCAACGCTGGGTATCACCTATCATGCCTGCTATCTGCTCACCCGAATATGAAGGCCGTGGTGGTTGATGAAGTAGATATTTTTGTGTTTCGTCCTCACGTTGGACTGCGGGCAAGATATCATGCTGTCGTCTTTTTA
AATCAAATTCTGCTTAGTAGTCAAGGAGATGGACCTAAGCTGGCAAGACGACTAGTTGACATATACTTCGCACTATTCAAGGTGCTGATCTCCATGAATGTTGAAGCAGAGCAAGATGCAAAGAGCTTGAAAAACTCTAAGGATAAATTGAATAATGTTTCCGAAAAAAGCAAAAAGCAAGATTCCTTATCTGAAGCTCC
TGCTGAAATCGATTCGAGGATTCTATCTGCATTACTAACGGGTGTTAATAGAGCCTTTCCTTATGTTTCAACTGATGAAGCCGACGTTATCATAGAGAAGGAAACACGCGTGCTTTTCCAATTGGTGCATTCTAAGAGTTTCAACATTGGGGTGCAAGCATTGATGCTGCTATATCAACTTCTAGCTAAAAACCAAACTG
TCAGTGATCGCTTCTATCGTGCTCTTTATTCAACACTTTTGACTCCTGCTCTTTTGAAGTCTTCAAAGACAGAGATGTTTCTAGGGCTTATGTTCAAAGCGTTGAAGTCTGATATAAACTCAAAGCGTGTTGCTGCTTTTTCAAAACGGTTGTTGCAGGTTGCACTTCAACAGCCGCCACAATTTGCATGTGCTTGTCTT
TTGTTATTGTCTGAAGTTCTAAAAGCAAGACCTGTTCTTTGGAATGCAGTGCTTGAGCCTGAGGATGATGATGATGATATTGAACATTTTGTGGATGTTATGGAAGAAGGTGACCAAATGACAGAAAATGACCTCAAAGCCACTGCTCAGAGCTGTATCAAGTCAGAGCCAATTTCCAGTATTACTAAGGTAGAAAATGA
TGATAGAAGTGATTCTGAGTTGGACGATGAAGAAATTCCTGGTGATTCTTCTGATTCTGGAGATAACACTAATGAAGATGACGAGGACATATTTGGGAGTGCCAGGAATAATCCTGAACAGTCTAGGACTATCAGGGAAAGATCAAAATTTTCACAAGACAGATTAAATACAAATAATCAGTCTGATAAATTAGGCAAAA
CTAATGCCTGGCCTAAATCTGGCTACTATGATCCTCGTATCCGTGAACCTGCTTATTGGTATGTTTGTTCAAACTGTTTCTTTTGCAGTTAGGATTTGAGAACCTTCTTATTGGTTTATATGATTTAATTATTTTTGGGTTTGTTGTTCGGAAGGGAAACTTAAACTCTAGTGGTAGAATCATGAATGTTAATCTTGTGA
TGAATATAGTATTTATATTGCTTTCTGGCATTGAATAGGCTCTTTTGTCATCTAGAAATCATATTGTAGCTTTTGCTTATTTTTGAGGATTGGGAAAATAAAACTTGCTCGCAAGCATTATTGTTTACAAGAAAGAGTTGTTTAGGTGGCAACTATTTATATGTCATGGATTGTTATGTGCTTGTTATCAC
>TRINITY_DN119093_c9_g2_i1 from sample A1 / Example unspliced isoform:GGCGTACGTCCAAAATATAGAGATTACACGACCTACATATCATTACATTTTCTAGCCTGTGTTATATCTAGCGCCTCGACGCCGAGGAGCCCTGAGTGATCTCGGCCTCAGTCGGTGATCAAATCAATCGAAGAAACGAACAGTAAATCAAAGCGATGGGGGCCTTCAAAGCCTCACAGTCAGAACCCGCCCCTCAAAAG
ACAAAAAATGCTAAAGTAGACGTCAATTCTCTGAAGGCCGAAGTGGCATCCTTCGCTTCTTCTCTCGGCCTGGCAGGGATCTCTTCTGCTCAAAATGCCGGCTTCAATGACGCCGATTTTCAGAAAAAAGGGCCTATTAAACCCTCAAAAACAGCGAAAAATCCCCCATCAAAACAATCTGCAAAGCCCAGGGAACTTAA
AACGGAAAAGAATGATTCGAAACCTGGTAGGTTTAAAGCCTTCAAGGGTAAACGAAATCACGTAGAGGAAGCCAAAGGTCCTCTAAAAGGTCACGGTCCTTTACATGCAGCCGAGAATGACACAGTCGGCCAAAATAACGGCGCCGCCAAAAAACTTCCGAAATTGCCACTGATGAAGCCGAGCTCATTGTCGAGCCCGT
GGCATGCGGACGCAGCTAGCGTCGAAGCAAAATTAGTTCCCACAGATGCCAAATCGGCTGCTCATTTAACCAAGCCAGTATGGGAAGCTTTGCTGCAGACGAAACGCCAGCTGGCTCAGCGGTTGATGGATCAGTACGTTTTGGAGTACGAGATTTCGAGAGGAAAGAGTGCGGATATGCGCATGGTGTCCATGGCGCAG
AAGTCGGGGACGACGGCCGATAAAGTGGCAGCCATTACAGTTCTTGTGCAGGATAATCCACTTGCCAACTTAAAGGCCCTTGACGCCATTCTCGGAATGGTGACATCTAAGGTAGGTAAGCGCCATGCAGGTGTTGGTATTGATGCACTGAAGGAGTTGTTTTTTATCAGTTTGCTGCCAGATAGGAAACTGAAGTATTT
TGGCCAGCAACCTCTCCATGTTCTCTCAGAATCAAAGGATGGAAATTCACTTCTTCTGTTTTGGTATTGGGAAGATTGTCTAAAGCACAGgttattggagttcaaattcagttgttagctctttatggcatttatatctgcgatacattgtgttataacttcatagaattttagttgtgggtttgcttttaagtatgtgc
catataagtaaattgatgcaatttgccacaattatttaagcctgtgattgattttttaatcataatatccatatttttgaatcataaccattcttttgcactctacgtcattgtcattgttgaaaacaataaacagaatacaaatttgagcattatctgctggatgcaatacatctttgtgatgttgtagtcactaattt
acctcgtcacttatttacgaaagctgaatattcttgaaagttgttgtccattctaattgtgtctcctgcagttgtctgtttaataacgatagagaagagacacatgcatatatatttacttattattgcttatagtcagaatgatttgataaatgctaatttatgcagGTATGAGCACTTTGTGGTTGCATTGGAGGATG
CTTCCAAAGATACATTACCTTTCTTGAAAGACAAAGCCTTGAAGGTAGTCCAGCGGCATCATTTTCTCTCCTTAAGATTACGATTCTCTTATCATTGTTAAGCGGACATATTTTGTTTCTATGTCTAAGATTCAATCTCTTTGTGTTTTTTCTGAAGAAGTTATACTTTTGCTTATTTTCACTTACTTGAGAAGAATACC
TTTTACATTTTGTCCTTAAATAAGCAAAAGCTTTAGTTATTTTTATTTGCATCTGATATTGAGAAGACTCCCATTTTCATTCCTTTCTACCTATACTTGCAGCTTTTCCCTCTTGAACATGAAGACTAAATTGGCATGAAAGGCACATGCTTTTTTAAACACAGCAGTTGAATTTAATTCTTAATTTGTTTGCTTCCTCC
AAGGAAAATCTTCCCTGGAATATTTGGATGGAGGGCTATTCAACCGCAATCCACAGTAGTGTTTGGTAAC
Intron 2 GTGATCCTCT ... TGCAAGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.76 | 45 | 115.8 | 102 |
| A2 | 67.42 | 36 | 78 | 71 |
| A3 | 70.53 | 34 | 97.8 | 65 |
| A4 | 69.21 | 29 | 67.4 | 63 |
| A5 | 64.71 | 9 | 25 | 8 |
| A6 | 53.04 | 81 | 81 | 102 |
| A7 | 59.26 | 149 | 209.4 | 224 |
| A8 | 66.44 | 124 | 213 | 278 |
| A9 | 63.63 | 109 | 182.4 | 199 |
| A10 | 64.1 | 105 | 177 | 198 |
>TRINITY_DN102721_c0_g1_i7 from sample A4 / Example spliced isoformGGCGTACGTCCAAAATATAGAGATTACACGACCTACATATCATTACATTTTCTAGCCTGTGTTATATCTAGCGCCTCGACGCCGAGGAGCCCTGAGTGATCTCGGCCTCAGTCGGTGATCAAATCAATCGAAGAAACGAACAGTAAATCAAAGCGATGGGGGCCTTCAAAGCCTCACAGTCAGAACCCGCCCCTCAAAAG
ACAAAAAATGCTAAAGTAGACGTCAATTCTCTGAAGGCCGAAGTGGCATCCTTCGCTTCTTCTCTCGGCCTGGCAGGGATCTCTTCTGCTCAAAATGCCGGCTTCAATGACGCCGATTTTCAGAAAAAAGGGCCTATTAAACCCTCAAAAACAGCGAAAAATCCCCCATCAAAACAATCTGCAAAGCCCAGGGAACTTAA
AACGGAAAAGAATGATTCGAAACCTGGTAGGTTTAAAGCCTTCAAGGGTAAACGAAATCACGTAGAGGAAGCCAAAGGTCCTCTAAAAGGTCACGGTCCTTTACATGCAGCCGAGAATGACACAGTCGGCCAAAATAACGGCGCCGCCAAAAAACTTCCGAAATTGCCACTGATGAAGCCGAGCTCATTGTCGAGCCCGT
GGCATGCGGACGCAGCTAGCGTCGAAGCAAAATTAGTTCCCACAGATGCCAAATCGGCTGCTCATTTAACCAAGCCAGTATGGGAAGCTTTGCTGCAGACGAAACGCCAGCTGGCTCAGCGGTTGATGGATCAGTACGTTTTGGAGTACGAGATTTCGAGAGGAAAGAGTGCGGATATGCGCATGGTGTCCATGGCGCAG
AAGTCGGGGACGACGGCCGATAAAGTGGCAGCCATTACAGTTCTTGTGCAGGATAATCCACTTGCCAACTTAAAGGCCCTTGACGCCATTCTCGGAATGGTGACATCTAAGGTAGGTAAGCGCCATGCAGGTGTTGGTATTGATGCACTGAAGGAGTTGTTTTTTATCAGTTTGCTGCCAGATAGGAAACTGAAGTATTT
TGGCCAGCAACCTCTCCATGTTCTCTCAGAATCAAAGGATGGAAATTCACTTCTTCTGTTTTGGTATTGGGAAGATTGTCTAAAGCACAGGTATGAGCACTTTGTGGTTGCATTGGAGGATGCTTCCAAAGATACATTACCTTTCTTGAAAGACAAAGCCTTGAAGACAATGTTTGATCTTCTTAAGAATAAACCTGAAC
AAGAACGCAAGCTCCTTTCAATGCTTGTGAACAAGCTTGGCGACCCGGAAAGGAAAGTAGCCTCCAACGCTGGGTATCACCTATCATGCCTGCTATCTGCTCACCCGAATATGAAGGCCGTGGTGGTTGATGAAGTAGATATTTTTGTGTTTCGTCCTCACGTTGGACTGCGGGCAAGATATCATGCTGTCGTCTTTTTA
AATCAAATTCTGCTTAGTAGTCAAGGAGATGGACCTAAGCTGGCAAGACGACTAGTTGACATATACTTCGCACTATTCAAGGTGCTGATCTCCATGAATGTTGAAGCAGAGCAAGATGCAAAGAGCTTGAAAAACTCTAAGGATAAATTGAATAATGTTTCCGAAAAAAGCAAAAAGCAAGATTCCTTATCTGAAGCTCC
TGCTGAAATCGATTCGAGGATTCTATCTGCATTACTAACGGGTGTTAATAGAGCCTTTCCTTATGTTTCAACTGATGAAGCCGACGTTATCATAGAGAAGGAAACACGCGTGCTTTTCCAATTGGTGCATTCTAAGAGTTTCAACATTGGGGTGCAAGCATTGATGCTGCTATATCAACTTCTAGCTAAAAACCAAACTG
TCAGTGATCGCTTCTATCGTGCTCTTTATTCAACACTTTTGACTCCTGCTCTTTTGAAGTCTTCAAAGACAGAGATGTTTCTAGGGCTTATGTTCAAAGCGTTGAAGTCTGATATAAACTCAAAGCGTGTTGCTGCTTTTTCAAAACGGTTGTTGCAGGTTGCACTTCAACAGCCGCCACAATTTGCATGTGCTTGTCTT
TTGTTATTGTCTGAAGTTCTAAAAGCAAGACCTGTTCTTTGGAATGCAGTGCTTGAGCCTGAGGATGATGATGATGATATTGAACATTTTGTGGATGTTATGGAAGAAGGTGACCAAATGACAGAAAATGACCTCAAAGCCACTGCTCAGAGCTGTATCAAGTCAGAGCCAATTTCCAGTATTACTAAGGTAGAAAATGA
TGATAGAAGTGATTCTGAGTTGGACGATGAAGAAATTCCTGGTGATTCTTCTGATTCTGGAGATAACACTAATGAAGATGACGAGGACATATTTGGGAGTGCCAGGAATAATCCTGAACAGTCTAGGACTATCAGGGAAAGATCAAAATTTTCACAAGACAGATTAAATACAAATAATCAGTCTGATAAATTAGGCAAAA
CTAATGCCTGGCCTAAATCTGGCTACTATGATCCTCGTATCCGTGAACCTGCTTATTGCAATGCAGATCGTGCCTCTTGGTGGGAACTGACAGCTTTGGCATCGCATGTACACCCATCAGTGGCAACAATGGCTCGAACTCTTCTTTTAGGTGCCAATATTGTGTATAATGGTTGACATTATTCCCCCTCTAGTAGGACC
TGACCTCCTCTCTTTGGCAGAAGAAGATGTTCGTCCTGAAGATGTTGTTTTTCACAAGTTTTATGTGGCAAAAGCTAACTCATCCAAACGGAAACCAAAGAAAAAGAAAGAAAAAGAAATTGATGATGAAGCCATAAGAGATGATCTCCTTGTTGAAGATGTTGAAGATGTCGAAGATGATTTTGCTGGGGGTGATGAAA
GTGATAATGATGAAATTGATAATTTGATAGAGCAAGATGCAGGCCTTGACACGCAATATCAGAGTGGTGGTGAATATGACTATGAACAATTGGATGAGGTACTTGAACTAGAGGATGAAGCCTTATTAGCTGATGACAGTGAAGGTGAGGCAGATATTATGGAAGATGCCACGTCTGGAGATGATGAGACACATGTTGAT
GAGGAGTTGGATTTTGATTCAGAGGCAATAAATATTGCAGGAAAAACCAAACAAAAGAAAAGGAAAGCTTCAGCAAAGCCAGGACAATCTCCGTTTGCAACATTAGAGGATTACAGCCATTTGTTAAATGATGGTGATAATACAACTGAAAATCATGGGCCAAGTCCCAAACGCAGATCAAACAAAAAATTAAACAGGAA
AGATCATTAGATGGACAATTTTTCTTCTTATGTAATTCATTATGCCAATTTCAAAGGGCTCATCTTGTAAGCTGCGAATTGAAAACGCCCATCTATTCAGCTCCTGCAAAAGTCCATTTTTGTCAATATCAAACTGGAACAGTCCTTTTAATCCTGTCGTTTGATTGAAGGTGGG
>TRINITY_DN102721_c0_g1_i8 from sample A4 / Example unspliced isoform:TCCTTTCAATGCTTGTGAACAAGGTAAGACTAGTCAGTTCCTCTTTTAGTCTCAGCTTCAAGTTCTTTCTAAGGGGTGTAAAATCCTCTCTCTGCATCTTCTCTATTAAGATTAAAACTTGATCCTTTATGACAACACTCAGAAGCCTGGTTATAGACTATACTGTTAGTAATATCATTTCTCATTTTTGTATTTTATTT
TTCCGAATTTCATCCATTGTCTGTTGCAATTTCCTCCCATAGGAAGTTCTCAATTCATTATTTATTCAAACAATATTGCTGAAGATTGAAGCGACTTGATAGATGACTTTATGTAGTTTGGTTAAATTCAATTCTCAAAACAATGCAGCTTGGCGACCCGGAAAGGAAAGTAGCCTCCAACGCTGGGTATCACCTATCAT
GCCTGCTATCTGCTCACCCGAATATGAAGGCCGTGGTGGTTGATGAAGTAGATATTTTTGTGTTTCGTCCTCACGTTGGACTGCGGGCAAGATATCATGCTGTCGTCTTTTTAAATCAAATTCTGCTTAGTAGTCAAGGAGATGGACCTAAGCTGGCAAGACGACTAGTTGACATATACTTCGCACTATTCAAGGTGCTG
ATCTCCATGAATGTTGAAGCAGAGCAAGATGCAAAGAGCTTGAAAAACTCTAAGGATAAATTGAATAATGTTTCCGAAAAAAGCAAAAAGCAAGATTCCTTATCTGAAGCTCCTGCTGAAATCGATTCGAGGATTCTATCTGCATTACTAACGGGTGTTAATAGAGCCTTTCCTTATGTTTCAACTGATGAAGCCGACGT
TATCATAGAGAAGGAAACACGCGTGCTTTTCCAATTGGTGCATTCTAAGAGTTTCAACATTGGGGTGCAAGCATTGATGCTGCTATATCAACTTCTAGCTAAAAACCAAACTGTCAGTGATCGCTTCTATCGTGCTCTTTATTCAACACTTTTGACTCCTGCTCTTTTGAAGTCTTCAAAGACAGAGATGTTTCTAGGGC
TTATGTTCAAAGCGTTGAAGTCTGATATAAACTCAAAGCGTGTTGCTGCTTTTTCAAAACGGTTGTTGCAGGTTGCACTTCAACAGCCGCCACAATTTGCATGTGCTTGTCTTTTGTTATTGTCTGAAGTTCTAAAAGCAAGACCTGTTCTTTGGAATGCAGTGCTTGAGCCTGAGGATGATGATGATGATATTGAACAT
TTTGTGGATGTTATGGAAGAAGGTGACCAAATGACAGAAAATGACCTCAAAGCCACTGCTCAGAGCTGTATCAAGTCAGAGCCAATTTCCAGTATTACTAAGGTAGAAAATGATGATAGAAGTGATTCTGAGTTGGACGATGAAGAAATTCCTGGTGATTCTTCTGATTCTGGAGATAACACTAATGAAGATGACGAGGA
CATATTTGGGAGTGCCAGGAATAATCCTGAACAGTCTAGGACTATCAGGGAAAGATCAAAATTTTCACAAGACAGATTAAATACAAATAATCAGTCTGATAAATTAGGCAAAACTAATGCCTGGCCTAAATCTGGCTACTATGATCCTCGTATCCGTGAACCTGCTTATTGCAATGCAGATCGTGCCTCTTGGTGGGAAC
TGACAGCTTTGGCATCGCATGTACACCCATCAGTGGCAACAATGGCTCGAACTCTTCTTTTAGGTGCCAATATTGTGTATAATGgtgatcctctaactgacctatcactgggagctttcattgatagatttatcgagaaaaaaccaaaggctagcaagaaatcatctggagagtggcacgggggctctcaaattgcacct
gcaagaaagGTTGACATTATTCCCCCTCTAGTAGGACCTGACCTCCTCTCTTTGGCAGAAGAAGATGTTCGTCCTGAAGATGTTGTTTTTCACAAGTTTTATGTGGCAAAAGCTAACTCATCCAAACGGAAACCAAAGAAAAAGAAAGAAAAAGAAATTGATGATGAAGCCATAAGAGATGATCTCCTTGTTGAAGATGT
TGAAGATGTCGAAGATGATTTTGCTGGGGGTGATGAAAGTGATAATGATGAAATTGATAATTTGATAGAGCAAGATGCAGGCCTTGACACGCAATATCAGAGTGGTGGTGAATATGACTATGAACAATTGGATGAGGTACTTGAACTAGAGGATGAAGCCTTATTAGCTGATGACAGTGAAGGTGAGGCAGATATTATGG
AAGATGCCACGTCTGGAGATGATGAGACACATGTTGATGAGGAGTTGGATTTTGATTCAGAGGCAATAAATATTGCAGGAAAAACCAAACAAAAGAAAAGGAAAGCTTCAGCAAAGCCAGGACAATCTCCGTTTGCAACATTAGAGGATTACAGCCATTTGTTAAATGATGGTGATAATACAACTGAAAATCATGGGCCA
AGTCCCAAACGCAGATCAAACAAAAAATTAAACAGGAAAGATCATTAGATGGACAATTTTTCTTCTTATGTAATTCATTATGCCAATTTCAAAGGGCTCATCTTGTAAGCTGCGAATTGAAAACGCCCATCTATTCAGCTCCTGCAAAAGTCCATTTTTGTCAATATCAAACTGGAACAGTCCTTTTAATCCTGTCGTTT
GATTGAAGGTGGG
Intron 3 GTAAATTATG ... TTCATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.14 | 110 | 0 | 35 |
| A2 | 20.78 | 61 | 2 | 16 |
| A3 | 17.91 | 110 | 0 | 24 |
| A4 | 15.38 | 88 | 0 | 16 |
| A5 | 14.29 | 42 | 0 | 7 |
| A6 | 23.68 | 29 | 0 | 9 |
| A7 | 15.38 | 88 | 0 | 16 |
| A8 | 23.08 | 60 | 0 | 18 |
| A9 | 13.95 | 74 | 0 | 12 |
| A10 | 14.41 | 95 | 0 | 16 |
>TRINITY_DN119914_c2_g1_i10 from sample A2 / Example spliced isoformCTCTTTTACCCCATTTGCTTGTTACGGCGTACGTCCAAAATATAGAGATTACACGACCTACATATCATTACATTTTCTAGCCTGTGTTATATCTAGCGCCTCGACGCCGAGGAGCCCTGAGTGATCTCGGCCTCAGTCGGTGATCAAATCAATCGAAGAAACGAACAGTAAATCAAAGCGATGGGGGCCTTCAAAGCCTC
ACAGTCAGAACCCGCCCCTCAAAAGACAAAAAATGCTAAAGTAGACGTCAATTCTCTGAAGGCCGAAGTGGCATCCTTCGCTTCTTCTCTCGGCCTGGCAGGGATCTCTTCTGCTCAAAATGCCGGCTTCAATGACGCCGATTTTCAGAAAAAAGGGCCTATTAAACCCTCAAAAACAGCGAAAAATCCCCCATCAAAAC
AATCTGCAAAGCCCAGGGAACTTAAAACGGAAAAGAATGATTCGAAACCTGGTAGGTTTAAAGCCTTCAAGGGTAAACGAAATCACGTAGAGGAAGCCAAAGGTCCTCTAAAAGGTCACGGTCCTTTACATGCAGCCGAGAATGACACAGTCGGCCAAAATAACGGCGCCGCCAAAAAACTTCCGAAATTGCCACTGATG
AAGCCGAGCTCATTGTCGAGCCCGTGGCATGCGGACGCAGCTAGCGTCGAAGCAAAATTAGTTCCCACAGATGCCAAATCGGCTGCTCATTTAACCAAGCCAGTATGGGAAGCTTTGCTGCAGACGAAACGCCAGCTGGCTCAGCGGTTGATGGATCAGTACGTTTTGGAGTACGAGATTTCGAGAGGAAAGAGTGCGGA
TATGCGCATGGTGTCCATGGCGCAGAAGTCGGGGACGACGGCCGATAAAGTGGCAGCCATTACAGTTCTTGTGCAGGATAATCCACTTGCCAACTTAAAGGCCCTTGACGCCATTCTCGGAATGGTGACATCTAAGGTAGGTAAGCGCCATGCAGGTGTTGGTATTGATGCACTGAAGGAGTTGTTTTTTATCAGTTTGC
TGCCAGATAGGAAACTGAAGTATTTTGGCCAGCAACCTCTCCATGTTCTCTCAGAATCAAAGGATGGAAATTCACTTCTTCTGTTTTGGTATTGGGAAGATTGTCTAAAGCACAGGTATGAGCACTTTGTGGTTGCATTGGAGGATGCTTCCAAAGATACATTACCTTTCTTGAAAGACAAAGCCTTGAAGACAATGTTT
GATCTTCTTAAGAATAAACCTGAACAAGAACGCAAGCTCCTTTCAATGCTTGTGAACAAGCTTGGCGACCCGGAAAGGAAAGTAGCCTCCAACGCTGGGTATCACCTATCATGCCTGCTATCTGCTCACCCGAATATGAAGGCCGTGGTGGTTGATGAAGTAGATATTTTTGTGTTTCGTCCTCACGTTGGACTGCGGGC
AAGATATCATGCTGTCGTCTTTTTAAATCAAATTCTGCTTAGTAGTCAAGGAGATGGACCTAAGCTGGCAAGACGACTAGTTGACATATACTTCGCACTATTCAAGGTGCTGATCTCCATGAATGTTGAAGCAGAGCAAGATGCAAAGAGCTTGAAAAACTCTAAGGATAAATTGAATAATGTTTCCGAAAAAAGCAAAA
AGCAAGATTCCTTATCTGAAGCTCCTGCTGAAATCGATTCGAGGATTCTATCTGCATTACTAACGGGTGTTAATAGAGCCTTTCCTTATGTTTCAACTGATGAAGCCGACGTTATCATAGAGAAGGAAACACGCGTGCTTTTCCAATTGGTGCATTCTAAGAGTTTCAACATTGGGGTGCAAGCATTGATGCTGCTATAT
CAACTTCTAGCTAAAAACCAAACTGTCAGTGATCGCTTCTATCGTGCTCTTTATTCAACACTTTTGACTCCTGCTCTTTTGAAGTCTTCAAAGACAGAGATGTTTCTAGGGCTTATGTTCAAAGCGTTGAAGTCTGATATAAACTCAAAGCGTGTTGCTGCTTTTTCAAAACGGTTGTTGCAGGTTGCACTTCAACAGCC
GCCACAATTTGCATGTGCTTGTCTTTTGTTATTGTCTGAAGTTCTAAAAGCAAGACCTGTTCTTTGGAATGCAGTGCTTGAGCCTGAGGATGATGATGATGATATTGAACATTTTGTGGATGTTATGGAAGAAGGTGACCAAATGACAGAAAATGACCTCAAAGCCACTGCTCAGAGCTGTATCAAGTCAGAGCCAATTT
CCAGTATTACTAAGGTAGAAAATGATGATAGAAGTGATTCTGAGTTGGACGATGAAGAAATTCCTGGTGATTCTTCTGATTCTGGAGATAACACTAATGAAGATGACGAGGACATATTTGGGAGTGCCAGGAATAATCCTGAACAGTCTAGGACTATCAGGGAAAGATCAAAATTTTCACAAGACAGATTAAATACAAAT
AATCAGTCTGATAAATTAGGCAAAACTAATGCCTGGCCTAAATCTGGCTACTATGATCCTCGTATCCGTGAACCTGCTTATTGCAATGCAGATCGTGCCTCTTGGTGGGAACTGACAGCTTTGGCATCGCATGTACACCCATCAGTGGCAACAATGGCTCGAACTCTTCTTTTAGGTGCCAATATTGTGTATAATGGTGA
TCCTCTAACTGACCTATCACTGGGAGCTTTCATTGATAGATTTATCGAGAAAAAACCAAAGGCTAGCAAGAAATCATCTGGAGAGTGGCACGGGGGCTCTCAAATTGCACCTGCAAGAAAGGTTGACATTATTCCCCCTCTAGTAGGACCTGACCTCCTCTCTTTGGCAGAAGAAGATGTTCGTCCTGAAGATGTTGTTT
TTCACAAGTTTTATGTGGCAAAAGCTAACTCATCCAAACGGAAACCAAAGAAAAAGAAAGAAAAAGAAATTGATGATGAAGCCATAAGAGATGATCTCCTTGTTGAAGATGTTGAAGATGTCGAAGATGATTTTGCTGGGGGTGATGAAAGTGATAATGATGAAATTGATAATTTGATAGAGCAAGATGCAGGCCTTGAC
ACGCAATATCAGAGTGGTGGTGAATATGACTATGAACAATTGGATGAGGTACTTGAACTAGAGGATGAAGCCTTATTAGCTGATGACAGTGAAGGTGAGGCAGATATTATGGAAGATGCCACGTCTGGAGATGATGAGACACATGTTGATGAGGAGTTGGATTTTGATTCAGAGGCAATAAATATTGCAGGAAAAACCAA
ACAAAAGAAAAGGAAAGCTTCAGCAAAGCCAGGACAATCTCCGTTTGCAACATTAGAGGATTACAGCCATTTGTTAAATGATGGTGATAATACAACTGAAAATCATGGGCCAAGTCCCAAACGCAGATCAAACAAAAAATTAAACAGGAAAGATCATTAGATGGACAATTTTTCTTCTTATGTAATTCATTATGCCAATT
TCAAAGGGCTCATCTTGTAAGCTGCGAATTGAAAACGCCCATCTATTCAGCTCCTGCAAAAGTCCATTTTTGTCAATATCAAACTGGAACAGTCCTTTTAATCCTGTCGTTTGATTGAAGGTGGATTAGTAGTTAGTGATATATTTTCTCTTTCCTTTGCTTCCAATTGTTGAAACTGGAAGGATACTTGATTAGATAAT
ACTAATAAG
>TRINITY_DN119914_c2_g1_i5 from sample A2 / Example unspliced isoform:ACACGCGTGCTTTTCCAATTGgtaaattatgattgtaaaagacattgtttacaacctatcatttggttatttggtcattatttgtgacctcaagtgtgttcatggcagGTGCATTCTAAGAGTTTCAACATTGGGGTGCAAGCATTGATGCTGCTATATCAACTTCTAGCTAAAAACCAAACTGTCAGTGATCGCTTCTA
TCGTGCTCTTTATTCAACACTTTTGACTCCTGCTCTTTTGAAGTCTTCAAAGACAGAGATGTTTCTAGGGCTTATGTTCAAAGCGTTGAAGTCTGATATAAACTCAAAGCGTGTTGCTGCTTTTTCAAAACGGTTGTTGCAGGTTGCACTTCAACAGCCGCCACAATTTGCATGTGCTTGTCTTTTGTTATTGTCTGAAG
TTCTAAAAGCAAGACCTGTTCTTTGGAATGCAGTGCTTGAGCCTGAGGATGATGATGATGATATTGAACATTTTGTGGATGTTATGGAAGAAGGTGACCAAATGACAGAAAATGACCTCAAAGCCACTGCTCAGAGCTGTATCAAGTCAGAGCCAATTTCCAGTATTACTAAGGTAGAAAATGATGATAGAAGTGATTCT
GAGTTGGACGATGAAGAAATTCCTGGTGATTCTTCTGATTCTGGAGATAACACTAATGAAGATGACGAGGACATATTTGGGAGTGCCAGGAATAATCCTGAACAGTCTAGGACTATCAGGGAAAGATCAAAATTTTCACAAGACAGATTAAATACAAATAATCAGTCTGATAAATTAGGCAAAACTAATGCCTGGCCTAA
ATCTGGCTACTATGATCCTCGTATCCGTGAACCTGCTTATTGCAATGCAGATCGTGCCTCTTGGTGGGAACTGACAGCTTTGGCATCGCATGTACACCCATCAGTGGCAACAATGGCTCGAACTCTTCTTTTAGGTGCCAATATTGTGTATAATGGTGATCCTCTAACTGACCTATCACTGGGAGCTTTCATTGATAGAT
TTATCGAGAAAAAACCAAAGGCTAGCAAGAAATCATCTGGAGAGTGGCACGGGGGCTCTCAAATTGCACCTGCAAGAAAGGTTGACATTATTCCCCCTCTAGTAGGACCTGACCTCCTCTCTTTGGCAGAAGAAGATGTTCGTCCTGAAGATGTTGTTTTTCACAAGTTTTATGTGGCAAAAGCTAACTCATCCAAACGG
AAACCAAAGAAAAAGAAAGAAAAAGAAATTGATGATGAAGCCATAAGAGATGATCTCCTTGTTGAAGATGTTGAAGATGTCGAAGATGATTTTGCTGGGGGTGATGAAAGTGATAATGATGAAATTGATAATTTGATAGAGCAAGATGCAGGCCTTGACACGCAATATCAGAGTGGTGGTGAATATGACTATGAACAATT
GGATGAGGTACTTGAACTAGAGGATGAAGCCTTATTAGCTGATGACAGTGAAGGTGAGGCAGATATTATGGAAGATGCCACGTCTGGAGATGATGAGACACATGTTGATGAGGAGTTGGATTTTGATTCAGAGGCAATAAATATTGCAGGAAAAACCAAACAAAAGAAAAGGAAAGCTTCAGCAAAGCCAGGACAATCTC
CGTTTGCAACATTAGAGGATTACAGCCATTTGTTAAATGATGGTGATAATACAACTGAAAATCATGGGCCAAGTCCCAAACGCAGATCAAACAAAAAATTAAACAGGAAAGATCATTAGATGGACAATTTTTCTTCTTATGTAATTCATTATGCCAATTTCAAAGGGCTCATCTTGTAAGCTGCGAATTGAAAACGCCCA
TCTATTCAGCTCCTGCAAAAGTCCATTTTTGTCAATATCAAACTGGAACAGTCCTTTTAATCCTGTCGTTTGATTGAAGGTGGATTAGTAGTTAGTGATATATTTTCTCTTTCCTTTGCTTCCAATTGTTGAAACTGGAAGGATACTTGATTAGATAATACTAATAAG
Intron 4 GTAAGACTAG ... AACAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.72 | 90.6 | 1 | 17.5 |
| A2 | 14.04 | 61.4 | 0 | 10 |
| A3 | 8.6 | 78.3 | 2 | 8.5 |
| A4 | 12.32 | 57.8 | 1 | 8.5 |
| A5 | 11.81 | 45 | 0 | 6.5 |
| A6 | 0 | 22.1 | 0 | 0 |
| A7 | 9.22 | 62.4 | 0 | 7.5 |
| A8 | 7.65 | 20.7 | 0 | 2 |
| A9 | 4.26 | 70.7 | 0 | 3.5 |
| A10 | 3.07 | 70.7 | 0 | 2.5 |
>TRINITY_DN119093_c9_g2_i6 from sample A1 / Example spliced isoformGGCGTACGTCCAAAATATAGAGATTACACGACCTACATATCATTACATTTTCTAGCCTGTGTTATATCTAGCGCCTCGACGCCGAGGAGCCCTGAGTGATCTCGGCCTCAGTCGGTGATCAAATCAATCGAAGAAACGAACAGTAAATCAAAGCGATGGGGGCCTTCAAAGCCTCACAGTCAGAACCCGCCCCTCAAAAG
ACAAAAAATGCTAAAGTAGACGTCAATTCTCTGAAGGCCGAAGTGGCATCCTTCGCTTCTTCTCTCGGCCTGGCAGGGATCTCTTCTGCTCAAAATGCCGGCTTCAATGACGCCGATTTTCAGAAAAAAGGGCCTATTAAACCCTCAAAAACAGCGAAAAATCCCCCATCAAAACAATCTGCAAAGCCCAGGGAACTTAA
AACGGAAAAGAATGATTCGAAACCTGGTAGGTTTAAAGCCTTCAAGGGTAAACGAAATCACGTAGAGGAAGCCAAAGGTCCTCTAAAAGGTCACGGTCCTTTACATGCAGCCGAGAATGACACAGTCGGCCAAAATAACGGCGCCGCCAAAAAACTTCCGAAATTGCCACTGATGAAGCCGAGCTCATTGTCGAGCCCGT
GGCATGCGGACGCAGCTAGCGTCGAAGCAAAATTAGTTCCCACAGATGCCAAATCGGCTGCTCATTTAACCAAGCCAGTATGGGAAGCTTTGCTGCAGACGAAACGCCAGCTGGCTCAGCGGTTGATGGATCAGTACGTTTTGGAGTACGAGATTTCGAGAGGAAAGAGTGCGGATATGCGCATGGTGTCCATGGCGCAG
AAGTCGGGGACGACGGCCGATAAAGTGGCAGCCATTACAGTTCTTGTGCAGGATAATCCACTTGCCAACTTAAAGGCCCTTGACGCCATTCTCGGAATGGTGACATCTAAGGTAGGTAAGCGCCATGCAGGTGTTGGTATTGATGCACTGAAGGAGTTGTTTTTTATCAGTTTGCTGCCAGATAGGAAACTGAAGTATTT
TGGCCAGCAACCTCTCCATGTTCTCTCAGAATCAAAGGATGGAAATTCACTTCTTCTGTTTTGGTATTGGGAAGATTGTCTAAAGCACAGGTATGAGCACTTTGTGGTTGCATTGGAGGATGCTTCCAAAGATACATTACCTTTCTTGAAAGACAAAGCCTTGAAGACAATGTTTGATCTTCTTAAGAATAAACCTGAAC
AAGAACGCAAGCTCCTTTCAATGCTTGTGAACAAGCTTGGCGACCCGGAAAGGAAAGTAGCCTCCAACGCTGGGTATCACCTATCATGCCTGCTATCTGCTCACCCGAATATGAAGGCCGTGGTGGTTGATGAAGTAGATATTTTTGTGTTTCGTCCTCACGTTGGACTGCGGGCAAGATATCATGCTGTCGTCTTTTTA
AATCAAATTCTGCTTAGTAGTCAAGGAGATGGACCTAAGCTGGCAAGACGACTAGTTGACATATACTTCGCACTATTCAAGGTGCTGATCTCCATGAATGTTGAAGCAGAGCAAGATGCAAAGAGCTTGAAAAACTCTAAGGATAAATTGAATAATGTTTCCGAAAAAAGCAAAAAGCAAGATTCCTTATCTGAAGCTCC
TGCTGAAATCGATTCGAGGATTCTATCTGCATTACTAACGGGTGTTAATAGAGCCTTTCCTTATGTTTCAACTGATGAAGCCGACGTTATCATAGAGAAGGAAACACGCGTGCTTTTCCAATTGGTGCATTCTAAGAGTTTCAACATTGGGGTGCAAGCATTGATGCTGCTATATCAACTTCTAGCTAAAAACCAAACTG
TCAGTGATCGCTTCTATCGTGCTCTTTATTCAACACTTTTGACTCCTGCTCTTTTGAAGTCTTCAAAGACAGAGATGTTTCTAGGGCTTATGTTCAAAGCGTTGAAGTCTGATATAAACTCAAAGCGTGTTGCTGCTTTTTCAAAACGGTTGTTGCAGGTTGCACTTCAACAGCCGCCACAATTTGCATGTGCTTGTCTT
TTGTTATTGTCTGAAGTTCTAAAAGCAAGACCTGTTCTTTGGAATGCAGTGCTTGAGCCTGAGGATGATGATGATGATATTGAACATTTTGTGGATGTTATGGAAGAAGGTGACCAAATGACAGAAAATGACCTCAAAGCCACTGCTCAGAGCTGTATCAAGTCAGAGCCAATTTCCAGTATTACTAAGGTAGAAAATGA
TGATAGAAGTGATTCTGAGTTGGACGATGAAGAAATTCCTGGTGATTCTTCTGATTCTGGAGATAACACTAATGAAGATGACGAGGACATATTTGGGAGTGCCAGGAATAATCCTGAACAGTCTAGGACTATCAGGGAAAGATCAAAATTTTCACAAGACAGATTAAATACAAATAATCAGTCTGATAAATTAGGCAAAA
CTAATGCCTGGCCTAAATCTGGCTACTATGATCCTCGTATCCGTGAACCTGCTTATTGGTATGTTTGTTCAAACTGTTTCTTTTGCAGTTAGGATTTGAGAACCTTCTTATTGGTTTATATGATTTAATTATTTTTGGGTTTGTTGTTCGGAAGGGAAACTTAAACTCTAGTGGTAGAATCATGAATGTTAATCTTGTGA
TGAATATAGTATTTATATTGCTTTCTGGCATTGAATAGGCTCTTTTGTCATCTAGAAATCATATTGTAGCTTTTGCTTATTTTTGAGGATTGGGAAAATAAAACTTGCTCGCAAGCATTATTGTTTACAAGAAAGAGTTGTTTAGGTGGCAACTATTTATATGTCATGGATTGTTATGTGCTTGTTATCAC
>TRINITY_DN119093_c9_g2_i8 from sample A1 / Example unspliced isoform:TCCTTTCAATGCTTGTGAACAAGgtaagactagtcatttcctcttttagtctcagcttcaagttctttctaaggggtgtaaaatcctctctctgcatcttctctattaagattaaaacttgatcctttatgacaacactcagaagcctggttatagactatactgttagtaatatcatttctcatttttgtattttattt
ttccgaatttcatccattgtctgttgcaatttcctcccataggaagttctcaattcattatttattcaaacaatattgctgaagattgaagcgacttgatagatgactttatgtagtttggttaaattcaattctcaaaacaatgcagCTTGGCGACCCGGAAAGGAAAGTAGCCTCCAACGCTGGGTATCACCTATCAT
GCCTGCTATCTGCTCACCCGAATATGAAGGTGCTATTCTTTCATATAACTCTTTTTCAATTGGGCTGATTGACTGCAGATATAGTTCTAGCTTT