sp|P92947|MDAR_ARATH ----> Monodehydroascorbate reductase, chloroplastic/mitochondrial
Intron 1 GTATTTGGTC ... TTTTGAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.01 | 159.6 | 6.3 | 19.9 |
| A2 | 13.12 | 106.7 | 3.1 | 16.4 |
| A3 | 7.76 | 178.7 | 1.4 | 15.1 |
| A4 | 12.71 | 114 | 3.9 | 16.7 |
| A5 | 5.98 | 63.3 | 0 | 4.9 |
| A6 | 6.71 | 433.7 | 0 | 35.7 |
| A7 | 7.14 | 532.7 | 2.7 | 44.7 |
| A8 | 7.89 | 458.3 | 2.4 | 42.6 |
| A9 | 5.52 | 514.1 | 0 | 32.3 |
| A10 | 8.85 | 419.3 | 2 | 41.7 |
>TRINITY_DN122641_c2_g2_i11 from sample A1 / Example spliced isoformTAAAAAGCCTGCGAGATTGCCGGTAAGACTCTTTTTAACAGCATACTGACCGAATGTAGACGTTCCTTTAGAAGGCATACAAGGATGGTGGACTTGAATGATCTGCTGCCACTTTTATTTCCTTGGGCGGATTGTCTGAGGAAATCTCTTTTTATCAGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGAGACAAACA
CCTGAATGGTACAAGGACAAAGGGATTGAGGCAAGTCCTTTACATTGCCATTTGTATTATTTATTCTTCTAGATCATGCTTATGCTTCTTGTATTATATTTATCATAGAGAACTATTTTGTTAGTCCAACATTCCCCATCTATTTTCCCTGGAAGAAGATCTGACAACAGGTGAATTTATTCTGGAAAGGTTATGTATGG
TACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTATATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTG
CCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAA
AGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGTTGTCGGGATTGGAGCGAAACCAGTAAGCACTCCTTTTGAAGACGCAGGTTTGAAGACTCATGCAGGGGGCATAGAGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTAT
TGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTT
ATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCAACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGAT
GCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGTACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGC
TATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
>TRINITY_DN122641_c2_g2_i1 from sample A1 / Example unspliced isoform:TTTATGCCCGACTTCTCTGCACCTGTCAATTCACTTTTACATTGAAGTGTTTATAGGGTTTATTAAAAGTAATTCTAAGGTTGTATTCGTTTAACAACTATTCTTATATGTTTTGCTTGGCCTGTAATGCGTGCTTTACCTGAAAGTGCAAAGGATTAATACTAATTATAGCTTTGGGCAATTTGGCTCCTTCAGGTTGA
TGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGgtatttggtctattatttcatttatattgctatcccagtcttgattgtaaaggttcatcataaattatcttcaccagttctatgtaatttcatttgattgtagcgtgtactcacataaagttactctgggtgc
tttgacaactattttagataacatatacaactgatgagtttacattgggctttttgaaaagATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCGTAAGCTGTATCAATTCTGTTTACTGGTCCCATCTTTTGTTTGA
TCAGAAAG
Intron 2 GCAAGTCCTT ... TTCTGGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.07 | 283.8 | 5 | 110.4 |
| A2 | 21.94 | 250.2 | 6 | 70 |
| A3 | 20.77 | 295.6 | 2 | 77.2 |
| A4 | 26.42 | 229.7 | 10 | 82 |
| A5 | 24.17 | 107.3 | 1 | 34 |
| A6 | 23.8 | 456 | 0 | 141.5 |
| A7 | 20.92 | 731.2 | 0 | 192.2 |
| A8 | 22.98 | 418.5 | 0 | 124 |
| A9 | 22.33 | 675.8 | 0 | 192.9 |
| A10 | 23.81 | 607.3 | 0 | 188.8 |
>TRINITY_DN122641_c2_g2_i5 from sample A1 / Example spliced isoformCACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAGCCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACA
TCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGGGCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGT
TGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGATAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGA
GACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTAT
ATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGA
ACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGTTGTCGGGATTGGAGCGAAACCAGTAAGCACTCCTTTTGAAGACGCAGGTTTGAAGACTCATGCAGGGGGCA
TAGAGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCG
AGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCA
ACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGATGCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGT
ACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGCTATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
>TRINITY_DN122641_c2_g2_i11 from sample A1 / Example unspliced isoform:TAAAAAGCCTGCGAGATTGCCGGTAAGACTCTTTTTAACAGCATACTGACCGAATGTAGACGTTCCTTTAGAAGGCATACAAGGATGGTGGACTTGAATGATCTGCTGCCACTTTTATTTCCTTGGGCGGATTGTCTGAGGAAATCTCTTTTTATCAGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGAGACAAACA
CCTGAATGGTACAAGGACAAAGGGATTGAGgcaagtcctttacattgccatttgtattatttattcttctagatcatgcttatgcttcttgtattatatttatcatagagaactattttgttagtccaacattccccatctattttccctggaagaagatctgacaacaggtgaatttattctggaaagGTTATGTATGG
TACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTATATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTG
CCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAA
AGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGTTGTCGGGATTGGAGCGAAACCAGTAAGCACTCCTTTTGAAGACGCAGGTTTGAAGACTCATGCAGGGGGCATAGAGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTAT
TGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTT
ATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCAACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGAT
GCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGTACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGC
TATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
Intron 3 GTATATAGTA ... TTGGGAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.51 | 148 | 12.3 | 18.7 |
| A2 | 12.53 | 119.7 | 10.7 | 18.7 |
| A3 | 13.5 | 104 | 7.7 | 17 |
| A4 | 14.33 | 120.6 | 20.3 | 21.3 |
| A5 | 4.42 | 72 | 4.7 | 3.7 |
| A6 | 6.93 | 513.9 | 35 | 45 |
| A7 | 7.47 | 563.7 | 37.3 | 53 |
| A8 | 7.67 | 638.9 | 35.7 | 63.7 |
| A9 | 6.85 | 518.3 | 33.3 | 44.7 |
| A10 | 6.27 | 375.2 | 23 | 29 |
>TRINITY_DN122641_c2_g2_i11 from sample A1 / Example spliced isoformTAAAAAGCCTGCGAGATTGCCGGTAAGACTCTTTTTAACAGCATACTGACCGAATGTAGACGTTCCTTTAGAAGGCATACAAGGATGGTGGACTTGAATGATCTGCTGCCACTTTTATTTCCTTGGGCGGATTGTCTGAGGAAATCTCTTTTTATCAGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGAGACAAACA
CCTGAATGGTACAAGGACAAAGGGATTGAGGCAAGTCCTTTACATTGCCATTTGTATTATTTATTCTTCTAGATCATGCTTATGCTTCTTGTATTATATTTATCATAGAGAACTATTTTGTTAGTCCAACATTCCCCATCTATTTTCCCTGGAAGAAGATCTGACAACAGGTGAATTTATTCTGGAAAGGTTATGTATGG
TACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTATATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTG
CCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAA
AGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGTTGTCGGGATTGGAGCGAAACCAGTAAGCACTCCTTTTGAAGACGCAGGTTTGAAGACTCATGCAGGGGGCATAGAGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTAT
TGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTT
ATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCAACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGAT
GCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGTACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGC
TATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
>TRINITY_DN122641_c2_g2_i4 from sample A1 / Example unspliced isoform:CACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAGCCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACA
TCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGGGCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGT
TGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGATAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGA
GACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTAT
ATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGA
ACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGT
ATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGgtatatagtattcattttgc
aaaagtatttttgagatgcgagtttcttatttgattctgtttatgtccatattcagttttttatgcctataattctgttttttcttttctaattgtttgggagtagTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGTGAGTAATGTATTTCCCTCTTTAATTTTAA
AACCAACTTGGTAGGATATTGTTTGAACAAAGTTACGTATGAGTATCATAAACTCTGAACAAGTGTACGAGTTGTACTTTTGCAAAGCCTCTATTATGTCTCAAGAAGTTCCCAAATAAACTTGAATTATGTGATTGCAGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGTATGAGAAAACCTCGTTC
CTTGTCCCTAATAATAGGAAAATTGAAATTAATCTAAAATTTAGAAAATCATTTGGTAATATTGTGAAGATTAAAGTTTTCTAATCATATTCTTTGATAATAATATAAGATTGTAATTCAATATCTTCTCATTGATGAATGTATTTCAAAATAAACGACAAGGATTTTTATATGTTCAAGAATAATTAGAAAAGAATGTG
ATTTGGATCAATCTTCAGGTAGTTATCCTTTGCATATAGACGGTTTTATATGTTTAGATATATGTGCATGCGTACATGCATATCTCAATAAATGTGTGAATATGCCCATGCGATATATATGTCTGTATAGTTTATATTACATGTACACTCAAATATTATATATATGACAAAGTTGGCATTTATGTATTTTCCTTCTATAC
TTGCATGCGAATACCTTTATTTATTTTCCCCATACTTGCAGTTAAGCCCATACTTTTATGTATTTTCCCCATACCTGCATGCTAATTGAATAAAGCAA
Intron 4 GTAAGCTGTA ... TGGAATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.5 | 166 | 49 | 53 |
| A2 | 18.66 | 109 | 29 | 21 |
| A3 | 26.19 | 93 | 40 | 26 |
| A4 | 26.24 | 104 | 42 | 32 |
| A5 | 20.41 | 78 | 21 | 19 |
| A6 | 19.29 | 433 | 90 | 117 |
| A7 | 19.44 | 520 | 96 | 155 |
| A8 | 20.48 | 462 | 97 | 141 |
| A9 | 19.35 | 389.8 | 71 | 116 |
| A10 | 21.98 | 346 | 82 | 113 |
>TRINITY_DN112142_c0_g1_i8 from sample A3 / Example spliced isoformCACGAATCAATTTAAAATTTTCAAGCATCCGTTGCCCCTTGGATGGTTGCGAGAGCCACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAG
CCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACATCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGG
GCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGTTGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGA
TAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGAGACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCT
GCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTATATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCT
GAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGTTGTCGGGATTGGAGC
GAAACCAGTAAGCACTCCTTTTGAAGACGCAGGTTTGAAGACTCATGCAGGGGGCATAGAGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGA
ATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTT
CTTGAAAGTGGAAGTCCGGAGAGAATGTGAGACATCTAAGGATCTTTGGGCCTTTAAGATCAACTCTGGGAATTTCAACATGTATCGTGTGTTTGATTGCTTATGGCACTGCCATAAAGATTTTATGGACATTGATCTATCATGATGCAACAAGCATGATCTTCTCCAATCGAATATTGCAATTAAGTGATGACTTTCTT
GGTTGCTTTGTACAAGAGAATGTGAGACATCTAAGGA
>TRINITY_DN112142_c0_g1_i9 from sample A3 / Example unspliced isoform:CACGAATCAATTTAAAATTTTCAAGCATCCGTTGCCCCTTGGATGGTTGCGAGAGCCACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAG
CCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACATCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGG
GCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGTTGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGA
TAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGAGACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCT
GCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTATATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCT
GAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGATGGGCAATTTAGAAC
GAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCgtaagctgtatcaattctgtttactggtcccatcttttgtttgatcagaaaga
acggcaatttttttattagatatatatggtagttaattaatattctgatttatggaatccagATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATT
TTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGTATGAGAAAACCTCGTTCCTTGTCCCTAATAATAGGAAAATTGAAATTAATCTAAAATTTAGAAAATCATTTGGTAATATTGTGAAGATTAAAGTTTTCTAATCATATTCTTTGATAATAATATAAGATTGTAATTCAATATCT
TCTCATTGATGAATGTATTTCAAAATAAACGACAAGGATTTTTATATGTTCAAGAATAATTAGAAAAGATTGTGATTTGGATCAATC
Intron 5 GTAAGACTCT ... TTTTTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.73 | 264 | 2.4 | 26.8 |
| A2 | 9.95 | 238 | 4.5 | 28.2 |
| A3 | 10.2 | 283 | 7.4 | 35.4 |
| A4 | 10.96 | 206 | 0.7 | 26.2 |
| A5 | 7.16 | 117 | 0 | 9.9 |
| A6 | 6.69 | 419.1 | 1.4 | 32.5 |
| A7 | 7.42 | 716 | 1.4 | 63.1 |
| A8 | 7.9 | 342 | 0 | 32.5 |
| A9 | 6.9 | 645.4 | 0 | 52.2 |
| A10 | 8.5 | 553.1 | 0 | 57.4 |
>TRINITY_DN122641_c2_g2_i5 from sample A1 / Example spliced isoformCACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAGCCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACA
TCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGGGCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGT
TGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGATAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGA
GACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTAT
ATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGA
ACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGTTGTCGGGATTGGAGCGAAACCAGTAAGCACTCCTTTTGAAGACGCAGGTTTGAAGACTCATGCAGGGGGCA
TAGAGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCG
AGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCA
ACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGATGCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGT
ACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGCTATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
>TRINITY_DN122641_c2_g2_i11 from sample A1 / Example unspliced isoform:TAAAAAGCCTGCGAGATTGCCGgtaagactctttttaacagcatactgaccgaatgtagacgttcctttagaaggcatacaaggatggtggacttgaatgatctgctgccacttttatttccttgggcggattgtctgaggaaatctctttttatcagGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGAGACAAACA
CCTGAATGGTACAAGGACAAAGGGATTGAGGCAAGTCCTTTACATTGCCATTTGTATTATTTATTCTTCTAGATCATGCTTATGCTTCTTGTATTATATTTATCATAGAGAACTATTTTGTTAGTCCAACATTCCCCATCTATTTTCCCTGGAAGAAGATCTGACAACAGGTGAATTTATTCTGGAAAGGTTATGTATGG
TACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTATATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTG
CCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAA
AGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGTTGTCGGGATTGGAGCGAAACCAGTAAGCACTCCTTTTGAAGACGCAGGTTTGAAGACTCATGCAGGGGGCATAGAGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTAT
TGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTT
ATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCAACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGAT
GCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGTACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGC
TATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
Intron 6 GTTGTTGTCG ... GGGCATAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.26 | 135 | 195 | 214.4 |
| A2 | 66.67 | 87 | 179 | 169 |
| A3 | 58.77 | 146 | 199 | 217.3 |
| A4 | 60.62 | 116 | 188 | 169.2 |
| A5 | 63.86 | 51 | 84 | 96.3 |
| A6 | 64.36 | 316 | 547 | 594.3 |
| A7 | 61.87 | 417.1 | 654 | 699.4 |
| A8 | 62.14 | 324.7 | 503 | 562.9 |
| A9 | 59.5 | 400 | 555 | 620.4 |
| A10 | 62.37 | 325 | 492 | 585.3 |
>TRINITY_DN122641_c2_g2_i9 from sample A1 / Example spliced isoformCACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAGCCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACA
TCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGGGCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGT
TGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGATAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGA
GACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTAT
ATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGA
ACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGT
ATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGTCGGGGAAACTATTGAAGTT
GGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCAACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGATGCTCTAAAGCTTGTTACAAAGTCCCTTGAGGT
CCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGTACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGCTATTTGAGATGCCGATATTATGGAGTTGAGCA
AAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
>TRINITY_DN122641_c2_g2_i5 from sample A1 / Example unspliced isoform:CACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAGCCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACA
TCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGGGCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGT
TGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGATAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGA
GACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTAT
ATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGA
ACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGgttgttgtcgggattggagcgaaaccagtaagcactccttttgaagacgcaggtttgaagactcatgcagggggca
tagagGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCG
AGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCA
ACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGATGCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGT
ACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGCTATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
Intron 7 GTGAGTAATG ... GTGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.53 | 159.3 | 14 | 23.3 |
| A2 | 10.82 | 194.4 | 10 | 24.9 |
| A3 | 9.44 | 161.6 | 6 | 17.1 |
| A4 | 11.35 | 121.9 | 8 | 16.1 |
| A5 | 9.3 | 65.7 | 4 | 6.9 |
| A6 | 10.61 | 873.7 | 0 | 110.7 |
| A7 | 8.7 | 893.9 | 1 | 89.1 |
| A8 | 11.02 | 966.1 | 0 | 127.4 |
| A9 | 11.34 | 846 | 0 | 116 |
| A10 | 9.76 | 514.1 | 0 | 58.3 |
>TRINITY_DN122641_c2_g2_i11 from sample A1 / Example spliced isoformTAAAAAGCCTGCGAGATTGCCGGTAAGACTCTTTTTAACAGCATACTGACCGAATGTAGACGTTCCTTTAGAAGGCATACAAGGATGGTGGACTTGAATGATCTGCTGCCACTTTTATTTCCTTGGGCGGATTGTCTGAGGAAATCTCTTTTTATCAGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGAGACAAACA
CCTGAATGGTACAAGGACAAAGGGATTGAGGCAAGTCCTTTACATTGCCATTTGTATTATTTATTCTTCTAGATCATGCTTATGCTTCTTGTATTATATTTATCATAGAGAACTATTTTGTTAGTCCAACATTCCCCATCTATTTTCCCTGGAAGAAGATCTGACAACAGGTGAATTTATTCTGGAAAGGTTATGTATGG
TACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTATATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTG
CCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAA
AGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGTTGTCGGGATTGGAGCGAAACCAGTAAGCACTCCTTTTGAAGACGCAGGTTTGAAGACTCATGCAGGGGGCATAGAGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTAT
TGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTT
ATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCAACCCTTTGTTGAAAAGTCAAAGCTACAAAGTGCAACATCCGTTGAGGAT
GCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGTACTTCATCGGGGTGAATAAATTCAATATCACATCAAGCAAGTTCTTAGC
TATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCATG
>TRINITY_DN122641_c2_g2_i4 from sample A1 / Example unspliced isoform:CACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAGCCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACA
TCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGGGCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGT
TGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGATAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGA
GACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCTGCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTAT
ATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCTGAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGA
ACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGATGGGCAATTTAGAACGAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGT
ATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAATGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGGTATATAGTATTCATTTTGC
AAAAGTATTTTTGAGATGCGAGTTTCTTATTTGATTCTGTTTATGTCCATATTCAGTTTTTTATGCCTATAATTCTGTTTTTTCTTTTCTAATTGTTTGGGAGTAGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGgtgagtaatgtatttccctctttaattttaa
aaccaacttggtaggatattgtttgaacaaagttacgtatgagtatcataaactctgaacaagtgtacgagttgtacttttgcaaagcctctattatgtctcaagaagttcccaaataaacttgaattatgtgattgcagGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGTATGAGAAAACCTCGTTC
CTTGTCCCTAATAATAGGAAAATTGAAATTAATCTAAAATTTAGAAAATCATTTGGTAATATTGTGAAGATTAAAGTTTTCTAATCATATTCTTTGATAATAATATAAGATTGTAATTCAATATCTTCTCATTGATGAATGTATTTCAAAATAAACGACAAGGATTTTTATATGTTCAAGAATAATTAGAAAAGAATGTG
ATTTGGATCAATCTTCAGGTAGTTATCCTTTGCATATAGACGGTTTTATATGTTTAGATATATGTGCATGCGTACATGCATATCTCAATAAATGTGTGAATATGCCCATGCGATATATATGTCTGTATAGTTTATATTACATGTACACTCAAATATTATATATATGACAAAGTTGGCATTTATGTATTTTCCTTCTATAC
TTGCATGCGAATACCTTTATTTATTTTCCCCATACTTGCAGTTAAGCCCATACTTTTATGTATTTTCCCCATACCTGCATGCTAATTGAATAAAGCAA
Intron 8 GTAAGTAGAT ... GTTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.78 | 255 | 71 | 24.8 |
| A2 | 28.08 | 251 | 98 | 23.4 |
| A3 | 22.35 | 271 | 78 | 28.6 |
| A4 | 16.99 | 254 | 52 | 22.6 |
| A5 | 25.56 | 166 | 57 | 24.5 |
| A6 | 19.68 | 453 | 111 | 30.5 |
| A7 | 19.16 | 675 | 160 | 45.6 |
| A8 | 17.51 | 292 | 62 | 25.4 |
| A9 | 20.77 | 538 | 141 | 39.2 |
| A10 | 21.45 | 553 | 151 | 39.1 |
>TRINITY_DN110841_c0_g1_i7 from sample A2 / Example spliced isoformCACGAATCAATTTAAAATTTTCAAGCATCCGTTGCCCCTTGGATGGTTGCGAGAGCCACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAG
CCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACATCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGG
GCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAGTTTGTCATTGTTGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGAGTGTTGCTCCATATGAACGCCCAGCTTTGACAAAAGCGTATCTCTTTCCACTCGA
TAAAAAGCCTGCGAGATTGCCGGGTTTCCACACTTGTGTGGGCTCCGGGGGAGAGAGACAAACACCTGAATGGTACAAGGACAAAGGGATTGAGGTTATGTATGGTACAACAGTGACAGGCCTGGATATCTCGAAACAAACACTTACAACGGCCTCTGGCAGCCATCTAAAATACGGGTCTCTTATTATTGCCACTGGCT
GCACTGCTTCAAGGTTGCCAGACAGCATTGGAGGAAATTTGCCAGGTGTCCATTATATTCGAGATGTTGCTGATGCTGATTTATTGGTATCTTCTATGCAAAGTGCCAAAAAACTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTTGCGGCTGCTGCTGCTGGTTGGAAGCTTGACACCACGGTAGTATTTCCT
GAAGAGCATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAATATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAGTGCATTTGTAAAAAGGCTGGTAGCTGGAATTGATGGGCGAGTAGCTGCAGTCCAACTGGAAAATGGAAGTACTCTTGACGCAGATATGGTTGATGGGCAATTTAGAAC
GAGTAGTCCAGGCATATTTTCTATTGGAGATGTGGCGGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGAGTTGAGCATGTTGATCACGCTCGCAAATCAGCTCAGCACTGTGTGAATGCACTATTAAATATTCGAACTGATCCATATGACTACTTGCCATACTTTTATTCGAGGGTATTCGAACATGAAGGCAGTT
CAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGTCGGGGAAACTATTGAAGTTGGTGATTTTGGCCCCAAGTACGCTACATTTTGGCTTGAATCTGGAAAACTGAAAGGCATCTTTCTTGAAAGTGGAAGTCCGGAGGAATGTGAAATTCTCCCAAAGTTGGCAAGGATTCAACCCTTTGTTGAAAAGTCAAAGCTA
CAAAGTGCAACATCCGTTGAGGATGCTCTAAAGCTTGTTACAAAGTCCCTTGAGGTCCAAGCCATAAGTTAGATCATATTTGGATGAACAATGCCCATAACTCATTTCTTCACAATGTGCAATAATTAATCTTAGCACCTTTTTGGTGGTTCACATTGATAAGAAGAGTTTAGGTACTTCATCGGGGTGAATAAATTCAA
TATCACATCAAGCAAGTTCTTAGCTATTTGAGATGCCGATATTATGGAGTTGAGCAAAAAATGAATTGTTTTCATGAAAAAACATTATATTCAAAATTTCATTGGAGAATTAAAATATGTATTTTCATGTCTTTACAACACCTACCTAAAAGACGCA
>TRINITY_DN110841_c0_g1_i8 from sample A2 / Example unspliced isoform:CACGAATCAATTTAAAATTTTCAAGCATCCGTTGCCCCTTGGATGGTTGCGAGAGCCACAAACCCGTATGGTCTTTACTGTTTTGTAAAGGCCGCACCGCCTCTACGAAATATCCTAAGCACACCTCAGCTCATACGAATAAATATACAACACGCAACAGAACCATGAACATGTCCGCTGACCTCTGGTATGATACGAAG
CCAATAGCTTGAATTACAGGGAGAAGAAGACGAAGAAACATAGAATGGCAATGACATCAATGACGCAGGGGGGTTTGGGATTAAAGCATGGAGCTTCTCTGTATTGTACCCAGCCCTCCACTTTTGTAATAAAGGACGCTTTCAGATCACTTACATCATATCTGCATCTTCATAGGCTTTCTTCCAGAAGCTGTCGAAGG
GCTACTTTGATTACTTGTGCATCGTTTGCCAATGAAAACAGAGAgtaagtagatctcttctcttcaattttgctggcattttacttttcaatgcgtgtatactcgctttcactataaacttcactcgtactcgattggagctcatgtgggttaattgtatcctatcctgttcccccatattattaagtacattgcattga
tgtattttcgtataaacaacattgcattgatgcattttcgtataaacatcccctaagcaacactcggtgagagctgtaaattcctaacaacgtgagttatgcccagctgaaagcaatattgaggaacatgctggagttattaggttaattacagcttgctcaaattacaagaatatatcctttttgtttatggtaagcct
ttctatggggagaacaacgtgtcaggtgggtgatccaatcctctctactgggagctatctggatctgaacctagcatcctgtgggggtgttgcccttactcaactaatgccttcttctgtatttgctctcaacctttgatttttgttttgatgctcgaggtgtcttaagaattgggtgggtatgtttttgtagGTTTGTC
ATTGTTGGAGGTGGCAATGCTGCAGGATATGCTGCTCGTACGTTTGTCGAAAATGGAATGGCTGATGGGAAGCTCTGTATTGTGTCAAAAGAGGTAGATTCATTGCTTAAAATTTCCATAATTAATATCTTTTTCAGTTAAAATTCATCGATCCATATACTTATTACCACCACTTTGTAACAAATTCTCTTGCAAAGATT
TGACATACAATATGTGTGTCCCTACTCAAAAGTGCATAGTTCTTACTTTGCTTATGCAAGATTTCAATGCTCCATCTCTTGCTTGTGCCTATAATTAGTTCACATGCTGTGTGCTGGTATTTTGTCTAAGGGTCTGATTTCTATTAAATTGAAACTTTCAAACTAATTTTTAGTGAAAAAGGTTCAAAATAAGAAGGAAG
AAATGCTGATGTCATTAAGAATAAGAAGTTTTCTTTGCCATTAACATTTTCTTATCACCCAACAATCAGAAAGCACTAAGTTCTAATTTATTGACAAATTGCTTGGGAAACAAATTCTTTTGGCATGGAAATCATCACTGTATCTTAAATCAAACTCTTTGGTTATTTGAAGAAAGATTGCAATATCCAATGTTTTCTTG
ATTTGGGTCCTGGTAATGAATTGCTCATACCCTTTTCCTTCCAAGCTCTTACTGCTGGCACTCAAAGCCAATTACAAATTAGCTTTTGAAGGGTTAGGTATATGAACCTCATCTTCTCCTATCTATACTGGTCTTACATAGTATCTCTAGGCTTTTTTTGTAATGAAGAATCCCAAAATATTGTGCTG