NA ----> NA
Intron 1 GTTTGTTTTC ... CCTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.69 | 35 | 20 | 11 |
| A2 | 22.89 | 32 | 17 | 2 |
| A3 | 21.88 | 25 | 10 | 4 |
| A4 | 28.57 | 20 | 3 | 13 |
| A5 | 25.58 | 16 | 4 | 7 |
| A6 | 22.74 | 107 | 28 | 35 |
| A7 | 22.64 | 123 | 38 | 34 |
| A8 | 24.58 | 112 | 40 | 33 |
| A9 | 21.81 | 95 | 14 | 39 |
| A10 | 25.62 | 90 | 32 | 30 |
>TRINITY_DN40281_c0_g2_i3 from sample A8 / Example spliced isoformAGCAGGTAACGGAATGTTTTTCTTTCATAAGTAAACAAACCCGCATGCCTACTCCCTTTAACTTGGCGAATCTCAGATTCCTCCAATTGTTGTTGACTTACTTACAAACCTCCAAGAGAATTCCAGTCTTTGAATCCTGGAATTCCGATTCAGTGGTTTACCTAATATTAGATTTTGTCCTTAAAAGTTAGTGGGTTCCA
GACCATATTTACATTATTGGCAATCGGGCTTAAAGAAATCCAGAGCTTCGTATACTGGATTTTGAAATTCTGAAGAATTGTGATGCTCAGAATTATATACGATAATTTGAACAAACTTTGCATGAAATGCCGGATTCGATATTCCGGGAGGAGAAGCAAGAAACCCAAAATTATAGTTACAGTGGCCAACAAGAGCAGAA
AGAATGGTACCCAACTTGAAAAACTTTCAGAGACTGGCGATGACGAGAAAAAAACAAAAGTGAAAACAATTAGGATTGCTACTTTTAATACAGCACTGTTCTCCATGGCTCCAGTTGTTCCCAAAAACATTAAAGAAGAGTCCGTTAGAAAGGATTCTGAGGGCAAGGATGCTCAAGTCCCTGTTAAAACTGATCTAAAG
CTCAAGTCTGCAATTGGGTTTTCTTCAGACCCCAGCATGCAGGTGCCCAGAAGTATTTTGAAGCCATTCCCAAGCTTTAATGATAGTACAAGTACTTCTGTGAGGAACTCAAAGGAAAATTCGAATTATGGTGAAAGTTCTAATTCCAAATTGAGATTAAGGGTAACCATAAATCTTCCTGAAAATGAAATATCATTGAG
CCAGATGAGGCCTTCAAGGCCTAATGTCATTCAGGATCCAAGTAGCAGCCGCCACGGAAGACGTGGGTGCACAATTTCAGATGCGGGTCCTAGTTACCATTCGAAAACTCTAAGCTCTGGTGATAGTCCTGGTCCTAACAAGCATCCCATGTCTCCAAGAAGTGACTATGGACTGAGTCCTATACCTTACGAAACTTCGA
ACATGAATAGAAGTATTTTTGAGGTTTTGAGAGAGGTGGATGCTGATTTATTGGCCCTTCAAGAGGTAAAGGCCGAGGAGGGGAAAGGAATGAAACCTCTTTCGGAGTTGGCGGAGGCCTTGGGAATGATTTATGTGTTTGCAGAAAGTTGGGCTCCTGAATATGGGAATGCCGTTCTTTCCAAATGGCCTATAAAGAGA
TGGAATGTTCAAAAAATTGCTGATGATTCTGATTTCAGGAATGTGTTGAAAGTAGTGGTTGATGTTCCCACAATTGGGGACCTGCATTTCCATTGCACTCACCTTGATCATTTAAATGAGGGGTGGAGAATGAAGCAGGTGACGGCAATGATGAATAGGGATGACGCTGCACACGTTTTGGCAGGAAGCTTGAACTCTCT
TGACACAACTGATTACTCGCAAGAGCGGTGGGAAGATATTGTAAAGTTTAATGAATATAGAGGTAAACCGAGCCCAAGAGGTGATGTGACGAAGCTTCTCAAAACAAAAGGCTATACTGATGCCAAACATTTTACTGGGGAGTGTGAATCTGTTGTTATTCTAGCTAGGGGTCAAGAAGTGCAAGGAACTTGCAAATATG
GAACACGTGTTGATTACATTTTAGCATCACAGAATGCTCCATATAAATTTGTTCCAGGATCATATGAAGTGATCTCATCTAGGGGAACTTCAGACCACCATATTGTGAAAGTTGACATTCAATCACAAGAGCCTATGAAACCTGCACGCCAGAAAAAGACCATAAGGATACGGCAGCCTCCCTCCAAAGGCATCTGGCAG
ATAAAATGATGGATCTCTTTAAGAAAGAGTTTTGGACCTCACAACAGTTTTGCTTGGATGGTTTGAAGAGGTCATGATATCTTGTGTTCTGATGCATAGATTTATCTGTAGATTATGTATCTTTGGTTTATACATGTGCATTTGTATAATTATTCTTTACATGTGATATTCATGATTAGTAGAATTAACTGGCATCATCT
CTTTAACAAGGGATTGATGGCGATGGTAATTTGGTTATGGCCATCTTTCTCTTAATCTGTTTTTTCTGGCATTGGAGGCAAGTCCATCTATCTTGCCTATGCTTTCTTTCCATTTTGGGCCTATTTCCTGTCTGGGCGTTAATTCTATTGTATTTGACATTGGGCATTCAATCCATGTCATAGATGGCAGGCATGTAATT
GAGGATGCAATTTTTACCATATGTAGTTGGAAAATCTCTTGTCTCCTCTTTATCTTATAGATGTTCAAAAAATTGTCATTTCCTCTGTATTCTAT
>TRINITY_DN40281_c0_g2_i1 from sample A8 / Example unspliced isoform:AGCAGGTAACGGAATGTTTTTCTTTCATAAGTAAACAAACCCGCATGCCTACTCCCTTTAACTTGGCGAATCTCAGATTCCTCCAATTGTTGTTGACTTACTTACAAACCTCCAAGAGAATTCCAGTCTTTGAATCCTGGAATTCCGATTCAGTGGTTTACCTAATATTAGATTTTGTCCTTAAAAGTTAGTGGGTTCCA
GACCATATTTACATTATTGGCAATCGGGCTTAAAGAAATCCAGAGCTTCGTATACTGGATTTTGAAATTCTGAAGAATTGTGATGCTCAGAATTATATACGATAATTTGAACAAACTTTGCATGAAATGCCGGATTCGATATTCCGGGAGGAGAAGCAAGAAACCCAAAATTATAGTTACAGTGGCCAACAAGAGCAGAA
AGAATGGTACCCAACTTGAAAAACTTTCAGAGACTGGCGATGACGAGAAAAAAACAAAAGTGAAAACAATTAGGATTGCTACTTTTAATACAGCACTGTTCTCCATGGCTCCAGTTGTTCCCAAAAACATTAAAGAAGAGTCCGTTAGAAAGGATTCTGAGGGCAAGGATGCTCAAGTCCCTGTTAAAACTGATCTAAAG
CTCAAGTCTGCAATTGGGTTTTCTTCAGACCCCAGCATGCAGGTGCCCAGAAGTATTTTGAAGCCATTCCCAAGCTTTAATGATAGTACAAGTACTTCTGTGAGGAACTCAAAGGAAAATTCGAATTATGGTGAAAGTTCTAATTCCAAATTGAGATTAAGGGTAACCATAAATCTTCCTGAAAATGAAATATCATTGAG
CCAGATGAGGCCTTCAAGGCCTAATGTCATTCAGGATCCAAGTAGCAGCCGCCACGGAAGACGTGGGTGCACAATTTCAGATGCGGGTCCTAGTTACCATTCGAAAACTCTAAGCTCTGGTGATAGTCCTGGTCCTAACAAGCATCCCATGTCTCCAAGAAGTGACTATGGACTGAGTCCTATACCTTACGAAACTTCGA
ACATGAATAGAAGTATTTTTGAGGTTTTGAGAGAGGTGGATGCTGATTTATTGGCCCTTCAAGAGGTAAAGGCCGAGGAGGGGAAAGGAATGAAACCTCTTTCGGAGTTGGCGGAGGCCTTGGGAATGATTTATGTGTTTGCAGAAAGTTGGGCTCCTGAATATGGGAATGCCGTTCTTTCCAAATGGCCTATAAAGAGA
TGGAATGTTCAAAAAATTGCTGATGATTCTGATTTCAGGAATGTGTTGAAAGTAGTGGTTGATGTTCCCACAATTGGGGACCTGCATTTCCATTGCACTCACCTTGATCATTTAAATGAGGGGTGGAGAATGAAGCAGGTGACGGCAATGATGAATAGGGATGACGCTGCACACGTTTTGGCAGGAAGCTTGAACTCTCT
TGACACAACTGATTACTCGCAAGAGCGGTGGGAAGATATTGTAAAGgtttgttttctaggactcacccctggcaaagccttttattgttaggctgcaatagaagtcaaaaattaaatttaagtgccgcattaatgacttgaaatttttttatgtaatagatagtctctgagctagtatttatctgaaagattgaacatga
aagtgtttcctcttgcagTTTAATGAATATAGAGGTAAACCGAGCCCAAGAGGTGATGTGACGAAGCTTCTCAAAACAAAAGGCTATACTGATGCCAAACATTTTACTGGGGAGTGTGAATCTGTTGTTATTCTAGCTAGGGGTCAAGAAGTGCAAGGAACTTGCAAATATGGAACACGTGTTGATTACATTTTAGCATC
ACAGAATGCTCCATATAAATTTGTTCCAGGATCATATGAAGTGATCTCATCTAGGGGAACTTCAGACCACCATATTGTGAAAGTTGACATTCAATCACAAGAGCCTATGAAACCTGCACGCCAGAAAAAGACCATAAGGATACGGCAGCCTCCCTCCAAAGGCATCTGGCAGATAAAATGATGGATCTCTTTAAGAAAGA
GTTTTGGACCTCACAACAGTTTTGCTTGGATGGTTTGAAGAGGTCATGATATCTTGTGTTCTGATGCATAGATTTATCTGTAGATTATGTATCTTTGGTTTATACATGTGCATTTGTATAATTATTCTTTACATGTGATATTCATGATTAGTAGAATTAACTGGCATCATCTCTTTAACAAGGGATTGATGGCGATGGTA
ATTTGGTTATGGCCATCTTTCTCTTAATCTGTTTTTTCTGGCATTGGAGGCAAGTCCATCTATCTTGCCTATGCTTTCTTTCCATTTTGGGCCTATTTCCTGTCTGGGCGTTAATTCTATTGTATTTGACATTGGGCATTCAATCCATGTCATAGATGGCAGGCATGTAATTGAGGATGCAATTTTTACCATATGTAGTT
GGAAAATCTCTTGTCTCCTCTTTATCTTATAGATGTTCAAAAAATTGTCATTTCCTCTGTATTCTAT
Intron 2 GTAACGGAAT ... TTTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.55 | 5 | 1 | 11 |
| A2 | 57.14 | 6 | 12 | 4 |
| A3 | 46.67 | 4 | 3 | 4 |
| A4 | 50 | 6 | 3 | 9 |
| A5 | 60 | 1 | 1 | 2 |
| A6 | 33.33 | 4 | 0 | 4 |
| A7 | 42.11 | 11 | 1 | 15 |
| A8 | 37.5 | 5 | 1 | 5 |
| A9 | 45.45 | 12 | 6 | 14 |
| A10 | 50 | 4 | 3 | 5 |
>TRINITY_DN102436_c0_g1_i3 from sample A2 / Example spliced isoformATTTAATATGAATCACGTCAGAAACCAACAATAACAAAATTGGCGAGAGCAGACCCCAGCATGCAGGTGCCCAGAAGTATTTTGAAGCCATTCCCAAGCTTTAATGATAGTACAAGTACTTCTGTGAGGAACTCAAAGGAAAATTCGAATTATGGTGAAAGTTCTAATTCCAAATTGAGATTAAGGGTAACCATAAATCT
TCCTGAAAATGAAATATCATTGAGCCAGATGAGGCCTTCAAGGCCTAATGTCATTCAGGATCCAAGTAGCAGCCGCCACGGTAGACGTGGGTGCACAATTTCAGATGCGGGTCCTAGTTACCATTCGAAAACTCTAAGCTCTGGTGATAGTCCTGGTCCTAACAAGCATCCCATGTCTCCAAGAAGTGACTATGGACTGA
GTCCTATACCTTACGAAACTTCGAACATGAATAGAAGTATTTTTGAGGTTTTGAGAGAGGTGGATGCTGATTTATTGGCCCTTCAAGAGGTAAAGGCCGAGGAGGGGAAAGGAATGAAACCTCTTTCGGAGTTGGCGGAGGCCTTGGGAATGATTTATGTGTTTGCAGAAAGTTGGGCTCCTGAATATGGGAATGCCGTT
CTTTCCAAATGGCCTATAAAGAGATGGAATGTTCAAAAAATTGCTGATGATTCTGATTTCAGGAATGTGTTGAAAGTAGTGGTTGATGTTCCCACAATTGGGGACCTGCATTTCCATTGCACTCACCTTGATCATTTAAATGAGGGGTGGAGAATGAAGCAGGTGACGGCAATGATGAATAGGGATGACGCTGCACACGT
TTTGGCAGGAAGCTTGAACTCTCTTGACACAACTGATTACTCGCAAGAGCGGTGGGAAGATATTGTAAAGTTTAATGAATATAGAGGTAAACCGAGCCCAAGAGGTGATGTGACGAAGCTTCTCAAAACAAAAGGCTATACTGATGCCAAACATTTTACTGGGGAGTGTGAATCTGTTGTTATTCTAGCTAGGGGTCAAG
AAGTGCAAGGAACTTGCAAATATGGAACACGTGTTGATTACATTTTAGCATCACAGAATGCTCCATATAAATTTGTTCCAGGATCATATGAAGTGATCTCATCTAGGGGAACTTCAGACCACCATATTGTGAAAGTTGACATTCAATCACAAGAGCCTATGAAACCTGCACGCCAGAAAAAGACCATAAGGATACGGCAG
CCTCCCTCCAAAGGCATCTGGCAGATAAAATGATGGATCTCTTTAAGAAAGAGTTTTGGACCTCACAACAGTTTTGCTTGGATGGTTTGAAGAGGTCATGATATCTTGTGTTCTGATGCATAGATTTATCTGTAGATTATGCATCTTTGGTTTATACATGTGCATTTGTATAATTATTCTTTACATGTGATATTCATGAT
TAGTAGAATTAACTGGCATCATCTCTTTAACAAGGGATTGATGGCGATGGTAATTTGGTTATGGCCATCTTTCTCTTAATCTGTTTTTTCTGACATTGGAGGCAAGTCCATCTATCTTGCCTATGCTTTATTTCCATTTTGGGCCTATTTCCTGTCTGGGCGTTAATTCTATTGTATTTGACATTGGGCATTCAATCCAT
GTCATAGATGGCAGGCATGTAATTGAGGATGCG
>TRINITY_DN102436_c0_g1_i1 from sample A2 / Example unspliced isoform:ATTTAATATGAATCACGTCAGAAACCAACAATAACAAAATTGGCGAGAGCAGgtaacggaatgtttttctttcataagtaaacaaacccgcatgcctactccctttaacttggcgaatctcagattcctccaattgttgttgacttacttacaaacctccaagagaattccagtctttgaatcctggaattccgattcag
tggtttacctaatattagattttgtccttaaaagttagtgggttccagaccatatttacattattggcaatcgggcttaaagaaatccagagcttcgtatactggattttgaaattctgaagaattgtgatgctcagaattatatacgataatttgaacaaactttgcatgaaatgccggattcgatattccgggaggag
aagcaagaaacccaaaattatagttacagtggccaacaagagcagaaagaatggtacccaacttgaaaaactttcagagactggcgatgacgagaaaaaaacaaaagtgaaaacaattaggattgctacttttaatacagcactgttctccatggctccagttgttcccaaaaacattaaagaagagtccgttagaaagg
attctgagggcaaggatgctcaagtccctgttaaaactgatctaaagctcaagtctgcaattgggttttcttcaggttgaaattgatttaagggtcgctctctgtttcattgtccagggtttagctatttggctttacacttttttcatttcagcacatgctttaggcattcctgcattgatattgtcacttgatgtact
tctgaatccattgacctaatttcgctatttatggaccttactgtaatgtctttctttcttgcagACCCCAGCATGCAGGTGCCCAGAAGTATTTTGAAGCCATTCCCAAGCTTTAATGATAGTACAAGTACTTCTGTGAGGAACTCAAAGGAAAATTCGAATTATGGTGAAAGTTCTAATTCCAAATTGAGATTAAGGGT
AACCATAAATCTTCCTGAAAATGAAATATCATTGAGCCAGATGAGGCCTTCAAGGCCTAATGTCATTCAGGATCCAAGTAGCAGCCGCCACGGTAGACGTGGGTGCACAATTTCAGATGCGGGTCCTAGTTACCATTCGAAAACTCTAAGCTCTGGTGATAGTCCTGGTCCTAACAAGCATCCCATGTCTCCAAGAAGTG
ACTATGGACTGAGTCCTATACCTTACGAAACTTCGAACATGAATAGAAGTATTTTTGAGGTTTTGAGAGAGGTGGATGCTGATTTATTGGCCCTTCAAGAGGTAAAGGCCGAGGAGGGGAAAGGAATGAAACCTCTTTCGGAGTTGGCGGAGGCCTTGGGAATGATTTATGTGTTTGCAGAAAGTTGGGCTCCTGAATAT
GGGAATGCCGTTCTTTCCAAATGGCCTATAAAGAGATGGAATGTTCAAAAAATTGCTGATGATTCTGATTTCAGGAATGTGTTGAAAGTAGTGGTTGATGTTCCCACAATTGGGGACCTGCATTTCCATTGCACTCACCTTGATCATTTAAATGAGGGGTGGAGAATGAAGCAGGTGACGGCAATGATGAATAGGGATGA
CGCTGCACACGTTTTGGCAGGAAGCTTGAACTCTCTTGACACAACTGATTACTCGCAAGAGCGGTGGGAAGATATTGTAAAGTTTAATGAATATAGAGGTAAACCGAGCCCAAGAGGTGATGTGACGAAGCTTCTCAAAACAAAAGGCTATACTGATGCCAAACATTTTACTGGGGAGTGTGAATCTGTTGTTATTCTAG
CTAGGGGTCAAGAAGTGCAAGGAACTTGCAAATATGGAACACGTGTTGATTACATTTTAGCATCACAGAATGCTCCATATAAATTTGTTCCAGGATCATATGAAGTGATCTCATCTAGGGGAACTTCAGACCACCATATTGTGAAAGTTGACATTCAATCACAAGAGCCTATGAAACCTGCACGCCAGAAAAAGACCATA
AGGATACGGCAGCCTCCCTCCAAAGGCATCTGGCAGATAAAATGATGGATCTCTTTAAGAAAGAGTTTTGGACCTCACAACAGTTTTGCTTGGATGGTTTGAAGAGGTCATGATATCTTGTGTTCTGATGCATAGATTTATCTGTAGATTATGCATCTTTGGTTTATACATGTGCATTTGTATAATTATTCTTTACATGT
GATATTCATGATTAGTAGAATTAACTGGCATCATCTCTTTAACAAGGGATTGATGGCGATGGTAATTTGGTTATGGCCATCTTTCTCTTAATCTGTTTTTTCTGACATTGGAGGCAAGTCCATCTATCTTGCCTATGCTTTATTTCCATTTTGGGCCTATTTCCTGTCTGGGCGTTAATTCTATTGTATTTGACATTGGG
CATTCAATCCATGTCATAGATGGCAGGCATGTAATTGAGGATGCG
Intron 3 GTAACGGAAT ... TTTTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 5 | 1 | 15 |
| A2 | 66.67 | 6 | 12 | 12 |
| A3 | 78.95 | 4 | 3 | 15 |
| A4 | 66.67 | 6 | 3 | 12 |
| A5 | 66.67 | 1 | 1 | 2 |
| A6 | 73.9 | 4.3 | 0 | 12 |
| A7 | 65.63 | 11 | 1.3 | 21 |
| A8 | 70.59 | 5 | 1 | 12 |
| A9 | 70 | 12 | 6 | 28 |
| A10 | 76.47 | 4 | 3 | 13 |
>TRINITY_DN114755_c0_g1_i4 from sample A1 / Example spliced isoformTATGAATCACGTCAGAAACCAACAATAACAAAATTGGCGAGAGCAGACCCCAGCATGCAGGTGCCCAGAAGTATTTTGAAGCCATTCCCAAGCTTTAATGATAGTACAAGTACTTCTGTGAGGAACTCAAAGGAAAATTCGAATTATGGTGAAAGTTCTAATTCCAAATTGAGATTAAGGGTAACCATAAATCTTCCTGA
AAATGAAATATCATTGAGCCAGATGAGGCCTTCAAGGCCTAATGTCATTCAGGATCCAAGTAGCAGCCGCCACGGAAGACGTGGGTGCACAATTTCAGATGCGGGTCCTAGTTACCATTCGAAAACTCTAAGCTCTGGTGATAGTCCTGGTCCTAACAAGCATCCCATGTCTCCAAGAAGTGACTATGGACTGAGTCCTA
TACCTTACGAAACTTCGAACATGAATAGAAGTATTTTTGAGGTTTTGAGAGAGGTGGATGCTGATTTATTGGCCCTTCAAGAGGTAAAGGCCGAGGAGGGGAAAGGAATGAAACCTCTTTCGGAGTTGGCGGAGGCCTTGGGAATGATTTATGTGTTTGCAGAAAGTTGGGCTCCTGAATATGGGAATGCCGTTCTTTCC
AAATGGCCTATAAAGAGATGGAATGTTCAAAAAATTGCTGATGATTCTGATTTCAGGAATGTGTTGAAAGTAGTGGTTGATGTTCCCACAATTGGGGACCTGCATTTCCATTGCACTCACCTTGATCATTTAAATGAGGGGTGGAGAATGAAGCAGGTGACGGCAATGATGAATAGGGATGACGCTGCACACGTTTTGGC
AGGAAGCTTGAACTCTCTTGACACAACTGATTACTCGCAAGAGCGGTGGGAAGATATTGTAAAGTTTAATGAATATAGAGGTAAACCGAGCCCAAGAGGTGATGTGACGAAGCTTCTCAAAACAAAAGGCTATACTGATGCCAAACATTTTACTGGGGAGTGTGAATCTGTTGTTATTCTAGCTAGGGGTCAAGAAGTGC
AAGGAACTTGCAAATATGGAACACGTGTTGATTACATTTTAGCATCACAGAATGCTCCATATAAATTTGTTCCAGGATCATATGAAGTGGTCTCATCTAGGGGAACTTCAGACCACCATATTGTGAAAGTTGACATTCAATCACAAGAGCCTATGAAACCTGCACGCCAGAAAAAGACCATAAGGATACGGCAGCCTCCC
TCCAAAGGCATCTGGCAGATAAAATGATGGATCTCTTTAAGAAAGAGTTTTGGACCTCACAACAGTTTTGCTTGGATGGTTTGAAGAGGTCATGATATCTTGTGTTCTGATGCATAGATTTATCTGTAGATTATGTATCTTTGGTTTATACATGTGCATTTGTATAATTATTCTTTACATGTGATATTCATGATTAGTAG
AATTAACTGGCATCTTCTCTTTAACAAGGGATTGATGGCGATGGTAATTTGGTTATGCCCATCTTTCTCTTTATCTGTTTTTTCTGGCATTGGAGGCAAGTCCATCTATCTTGCCTATGCTTTCTTTCCATTTTGGGCCTATTTCCTGTCTGGGCGTTAATTCTATTGTATTTGACATTGGGCATTCAATCCATGTCATA
GATGGCAGGCATGTAATTGAGGATGCAATTTTTACCATATGTAGTTGGAAAATCTCTTGTCTCCTCTTTATCTTATAGATGTTCAAAAAATTGTCATTTACTCTG
>TRINITY_DN114755_c0_g1_i5 from sample A1 / Example unspliced isoform:TATGAATCACGTCAGAAACCAACAATAACAAAATTGGCGAGAGCAGgtaacggaatgtttttctttcataagtaaacaaacccgcatgcctactccctttaacttggcgaatctcagattcctccaattgttgttgacttacttacaaacctccaagagaattccagtctttgaatcctggaattccgattcagtggttt
acctaatattagattttgtccttaaaagttagtgggttccagaccatatttacattattggcaatcgggcttaaagaaatccagagcttcgtatactggattttgaaattctgaagaattgtgatgctcagaattatatacgataatttgaacaaactttgcatgaaatgccggattcgatattccgggaggagaagcaa
gaaacccaaaattatagttacagtggccaacaagagcagaaagaatggtacccaacttgaaaaactttcagagactggcgatgacgagaaaaaaacaaaagtgaaaacaattaggattgctacttttaatacagcactgttctccatggctccagttgttcccaaaaacattaaagaagagtccgttagaaaggattctg
agggcaaggatgctcaagtccctgttaaaactgatctaaagctcaagtctgcaattgggttttcttcagACCCCAGCATGCAGGTGCCCAGAAGTATTTTGAAGCCATTCCCAAGCTTTAATGATAGTACAAGTACTTCTGTGAGGAACTCAAAGGAAAATTCGAATTATGGTGAAAGTTCTAATTCCAAATTGAGATTA
AGGGTAACCATAAATCTTCCTGAAAATGAAATATCATTGAGCCAGATGAGGCCTTCAAGGCCTAATGTCATTCAGGATCCAAGTAGCAGCCGCCACGGAAGACGTGGGTGCACAATTTCAGATGCGGGTCCTAGTTACCATTCGAAAACTCTAAGCTCTGGTGATAGTCCTGGTCCTAACAAGCATCCCATGTCTCCAAG
AAGTGACTATGGACTGAGTCCTATACCTTACGAAACTTCGAACATGAATAGAAGTATTTTTGAGGTTTTGAGAGAGGTGGATGCTGATTTATTGGCCCTTCAAGAGGTAAAGGCCGAGGAGGGGAAAGGAATGAAACCTCTTTCGGAGTTGGCGGAGGCCTTGGGAATGATTTATGTGTTTGCAGAAAGTTGGGCTCCTG
AATATGGGAATGCCGTTCTTTCCAAATGGCCTATAAAGAGATGGAATGTTCAAAAAATTGCTGATGATTCTGATTTCAGGAATGTGTTGAAAGTAGTGGTTGATGTTCCCACAATTGGGGACCTGCATTTCCATTGCACTCACCTTGATCATTTAAATGAGGGGTGGAGAATGAAGCAGGTGACGGCAATGATGAATAGG
GATGACGCTGCACACGTTTTGGCAGGAAGCTTGAACTCTCTTGACACAACTGATTACTCGCAAGAGCGGTGGGAAGATATTGTAAAGTTTAATGAATATAGAGGTAAACCGAGCCCAAGAGGTGATGTGACGAAGCTTCTCAAAACAAAAGGCTATACTGATGCCAAACATTTTACTGGGGAGTGTGAATCTGTTGTTAT
TCTAGCTAGGGGTCAAGAAGTGCAAGGAACTTGCAAATATGGAACACGTGTTGATTACATTTTAGCATCACAGAATGCTCCATATAAATTTGTTCCAGGATCATATGAAGTGGTCTCATCTAGGGGAACTTCAGACCACCATATTGTGAAAGTTGACATTCAATCACAAGAGCCTATGAAACCTGCACGCCAGAAAAAGA
CCATAAGGATACGGCAGCCTCCCTCCAAAGGCATCTGGCAGATAAAATGATGGATCTCTTTAAGAAAGAGTTTTGGACCTCACAACAGTTTTGCTTGGATGGTTTGAAGAGGTCATGATATCTTGTGTTCTGATGCATAGATTTATCTGTAGATTATGTATCTTTGGTTTATACATGTGCATTTGTATAATTATTCTTTA
CATGTGATATTCATGATTAGTAGAATTAACTGGCATCTTCTCTTTAACAAGGGATTGATGGCGATGGTAATTTGGTTATGCCCATCTTTCTCTTTATCTGTTTTTTCTGGCATTGGAGGCAAGTCCATCTATCTTGCCTATGCTTTCTTTCCATTTTGGGCCTATTTCCTGTCTGGGCGTTAATTCTATTGTATTTGACA
TTGGGCATTCAATCCATGTCATAGATGGCAGGCATGTAATTGAGGATGCAATTTTTACCATATGTAGTTGGAAAATCTCTTGTCTCCTCTTTATCTTATAGATGTTCAAAAAATTGTCATTTACTCTG
Intron 4 GTTGAAATTG ... TTTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.31 | 15 | 5 | 11 |
| A2 | 25 | 12 | 4.3 | 4 |
| A3 | 21.05 | 15 | 1.3 | 4 |
| A4 | 42.86 | 12 | 2.7 | 9 |
| A5 | 50 | 2 | 0 | 2 |
| A6 | 25 | 12 | 2 | 4 |
| A7 | 41.67 | 21 | 3.3 | 15 |
| A8 | 29.41 | 12 | 3.3 | 5 |
| A9 | 33.33 | 28 | 3 | 14 |
| A10 | 27.78 | 13 | 2.7 | 5 |
>TRINITY_DN114755_c0_g1_i7 from sample A1 / Example spliced isoformTATGAATCACGTCAGAAACCAACAATAACAAAATTGGCGAGAGCAGGTAACGGAATGTTTTTCTTTCATAAGTAAACAAACCCGCATGCCTACTCCCTTTAACTTGGCGAATCTCAGATTCCTCCAATTGTTGTTGACTTACTTACAAACCTCCAAGAGAATTCCAGTCTTTGAATCCTGGAATTCCGATTCAGTGGTTT
ACCTAATATTAGATTTTGTCCTTAAAAGTTAGTGGGTTCCAGACCATATTTACATTATTGGCAATCGGGCTTAAAGAAATCCAGAGCTTCGTATACTGGATTTTGAAATTCTGAAGAATTGTGATGCTCAGAATTATATACGATAATTTGAACAAACTTTGCATGAAATGCCGGATTCGATATTCCGGGAGGAGAAGCAA
GAAACCCAAAATTATAGTTACAGTGGCCAACAAGAGCAGAAAGAATGGTACCCAACTTGAAAAACTTTCAGAGACTGGCGATGACGAGAAAAAAACAAAAGTGAAAACAATTAGGATTGCTACTTTTAATACAGCACTGTTCTCCATGGCTCCAGTTGTTCCCAAAAACATTAAAGAAGAGTCCGTTAGAAAGGATTCTG
AGGGCAAGGATGCTCAAGTCCCTGTTAAAACTGATCTAAAGCTCAAGTCTGCAATTGGGTTTTCTTCAGACCCCAGCATGCAGGTGCCCAGAAGTATTTTGAAGCCATTCCCAAGCTTTAATGATAGTACAAGTACTTCTGTGAGGAACTCAAAGGAAAATTCGAATTATGGTGAAAGTTCTAATTCCAAATTGAGATTA
AGGGTAACCATAAATCTTCCTGAAAATGAAATATCATTGAGCCAGATGAGGCCTTCAAGGCCTAATGTCATTCAGGATCCAAGTAGCAGCCGCCACGGAAGACGTGGGTGCACAATTTCAGATGCGGGTCCTAGTTACCATTCGAAAACTCTAAGCTCTGGTGATAGTCCTGGTCCTAACAAGCATCCCATGTCTCCAAG
AAGTGACTATGGACTGAGTCCTATACCTTACGAAACTTCGAACATGAATAGAAGTATTTTTGAGGTTTTGAGAGAGGTGGATGCTGATTTATTGGCCCTTCAAGAGGTAAAGGCCGAGGAGGGGAAAGGAATGAAACCTCTTTCGGAGTTGGCGGAGGCCTTGGGAATGATTTATGTGTTTGCAGAAAGTTGGGCTCCTG
AATATGGGAATGCCGTTCTTTCCAAATGGCCTATAAAGAGATGGAATGTTCAAAAAATTGCTGATGATTCTGATTTCAGGTATATCTCTTCTGTATTGTTTCAATTTTTACAGAAAATCATACCCTTTAATATGTTTATATCACTTTTATTTCTGGTTAGTGTTGGTATTATCATTGATAGTAGAAAAGAGTGCTTCATG
GCTATACAACAATAGCAGTTAGCAAGATTAACAATTGAAAACGGTATACATGTTTTTCCTACTCCCTGCCATGAAAATAATTATGAATTTTTTTGGAAGAGTTTTCTTTGATGTGCAGTTCAAAAAATTAGCTGTCAAAAACATATATTTAGACTAGAAATATCTTTTGTAAATATTGTATATCTCAAAATAATTGTGTA
CATACGTAACAATTTGTTGACTGAAAAATGAAATTTATAATTTATTGACTGTGAAATGAAATGCATAGTAACTTGTAAGTTTTAGCTGGTGAGTTCATTTTCTTGAAGTGCAAGGTAAGATGTCAAATTTAAGCTGGGCAGACAATATGCTACCCTCTGAGCCTGGGCTGACAAAACAGAACACTCTGTTTTAGTTTATA
AACTCAACTCCGTCTTGAAGTTTTGTTATCTATTGGCTACATGCTAATTATCCCAATAGAATTTAGAGTTAGGCAGGTTCCCAACTCATTCTGTGCTCCTCTTCAACGAGCTCATTTATGTGCTCGTGATTCAGTGTGCTGCTTGTTTGTATTTGAATCAAAATTAGCTGTTCTACACATTTTGGAAATAGAACCAAAAT
GCCGGCCTTACAGCAGCTAACCTAACCTCC
>TRINITY_DN114755_c0_g1_i2 from sample A1 / Example unspliced isoform:TGGGTTTTCTTCAGgttgaaattgatttaagggtcgctctctgtttcattgtccagggtttagctatttggctttacacttttttcatttcagcacatgctttaggcattcctgcattgatattgtcacttgatgtacttctgaatccattgacctaatttcgctatttatggaccttactgtaatgtctttctttcttg
cagACCCCAGCATGCAGGTGCCCAGAAGTATTTTGAAGCCATTCCCAAGCTTTAATGATAGTACAAGTACTTCTGTGAGGAACTCAAAGGAAAATTCGAATTATGGTGAAAGTTCTAATTCCAAATTGAGATTAAGGGTAACCATAAATCTTCCTGAAAATGAAATATCATTGAGCCAGATGAGGCCTTCAAGGCCTAAT
GTCATTCAGGATCCAAGTAGCAGCCGCCACGGAAGACGTGGGTGCACAATTTCAGATGCGGGTCCTAGTTACCATTCGAAAACTCTAAGCTCTGGTGATAGTCCTGGTCCTAACAAGCATCCCATGTCTCCAAGAAGTGACTATGGACTGAGTCCTATACCTTACGAAACTTCGAACATGAATAGAAGTATTTTTGAGGT
TTTGAGAGAGGTGGATGCTGATTTATTGGCCCTTCAAGAGGTAAAGGCCGAGGAGGGGAAAGGAATGAAACCTCTTTCGGAGTTGGCGGAGGCCTTGGGAATGATTTATGTGTTTGCAGAAAGTTGGGCTCCTGAATATGGGAATGCCGTTCTTTCCAAATGGCCTATAAAGAGATGGAATGTTCAAAAAATTGCTGATG
ATTCTGATTTCAGGAATGTGTTGAAAGTAGTGGTTGATGTTCCCACAATTGGGGACCTGCATTTCCATTGCACTCACCTTGATCATTTAAATGAGGGGTGGAGAATGAAGCAGGTGACGGCAATGATGAATAGGGATGACGCTGCACACGTTTTGGCAGGAAGCTTGAACTCTCTTGACACAACTGATTACTCGCAAGAG
CGGTGGGAAGATATTGTAAAGTTTAATGAATATAGAGGTAAACCGAGCCCAAGAGGTGATGTGACGAAGCTTCTCAAAACAAAAGGCTATACTGATGCCAAACATTTTACTGGGGAGTGTGAATCTGTTGTTATTCTAGCTAGGGGTCAAGAAGTGCAAGGAACTTGCAAATATGGAACACGTGTTGATTACATTTTAGC
ATCACAGAATGCTCCATATAAATTTGTTCCAGGATCATATGAAGTGGTCTCATCTAGGGGAACTTCAGACCACCATATTGTGAAAGTTGACATTCAATCACAAGAGCCTATGAAACCTGCACGCCAGAAAAAGACCATAAGGATACGGCAGCCTCCCTCCAAAGGCATCTGGCAGATAAAATGATGGATCTCTTTAAGAA
AGAGTTTTGGACCTCACAACAGTTTTGCTTGGATGGTTTGAAGAGGTCATGATATCTTGTGTTCTGATGCATAGATTTATCTGTAGATTATGTATCTTTGGTTTATACATGTGCATTTGTATAATTATTCTTTACATGTGATATTCATGATTAGTAGAATTAACTGGCATCTTCTCTTTAACAAGGGATTGATGGCGATG
GTAATTTGGTTATGCCCATCTTTCTCTTTATCTGTTTTTTCTGGCATTGGAGGCAAGTCCATCTATCTTGCCTATGCTTTCTTTCCATTTTGGGCCTATTTCCTGTCTGGGCGTTAATTCTATTGTATTTGACATTGGGCATTCAATCCATGTCATAGATGGCAGGCATGTAATTGAGGATGCAATTTTTACCATATGTA
GTTGGAAAATCTCTTGTCTCCTCTTTATCTTATAGATGTTCAAAAAATTGTCATTTACTCTG