sp|Q9FG38|SNX1_ARATH ----> Sorting nexin 1
Intron 1 GTATGTATTC ... TCTGTGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 8 | 0 |
| A2 | 100 | 0 | 4 | 2 |
| A3 | 75 | 2 | 6 | 3 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 0 | 2 | 0 | 2 |
| A6 | 77.78 | 4 | 14 | 4 |
| A7 | 100 | 0 | 17.5 | 2 |
| A8 | 93.75 | 1 | 15 | 2 |
| A9 | 100 | 0 | 15 | 0 |
| A10 | 100 | 0 | 8 | 0 |
>TRINITY_DN114606_c5_g2_i8 from sample A3 / Example spliced isoformGCCAAGTTGAAGGAGATCAATGTCAATTTTGACTTGTGTTGTGTTTAGGGAGCGTTTGAAAGCAACAAGGCAGGAACACAAAGTGCCTGAAGCAGAAGCAGATTATAGAGAAGTTAAGGCTCAGAGCGAGGAAGCAACTAAACAACTAGAGACAATCATACAATTAATGAATGAGGAAATCATACGCTTCCAGGAAGAGA
AAACACTTGATTTAGGTTTTGTATTTCATGAATTTGCAAAAGGGCAGGCACAGCTTGCAAATGATATTGCAGATGCTTGGCGCAACCTTCTTCCTAAATTGGAAAATTGCTCTCAAAATGCCAGAGAAAATGTAGATTCTTCCACATAGCAGTTGCGCAAATAGATGATGTATTTGGAAAAAACGATTTTGTAATCTGTA
GCACAAAATCATCTTTGTAAATAATGCGTTTGATTGATTCATTGCATTCGATTAAAATGTGACTCGAGTGCTGATTTGCACACTAAGTGTGTTCTATATCAGATACTGCACATTTTGATCAGTGTGTTTCCCATCAAATGGTATGGTAGAGGGCTTGTTTGTTGACCATGCCGTCTCAAGGTTCTACCATCAGCAATTAA
ATTTCAGTAACGTTTTGAGCTGTTCAATATAGGAGTGATAGTTCAGAAATCATACCCGCTATGATTTTCCACCGTGGGATTATGTTTAATAAACACAGTATGGTTAATGCAATGTTCTGCTACTTTAAAATGCTGGAAATCATTTTTCTTTTGAAAATATTGGAG
>TRINITY_DN114606_c5_g2_i2 from sample A3 / Example unspliced isoform:TAAATAATCGCCCCTCACGAGGCAATCTTGTAATTAAATATTAAAATTTTCAAAGACCATGCCCATAGCTTTGAAACATCAAACCTCACTAATAACGATAACCAGTCCATCGTACTTCATCCATTAATCTTCTACTTGTATCCGTCCATCGCCTTGCATTTCTTTCGCGCAGGGCTGTTACGTATTGACGGCATCTAGTT
TGAAGCGTTCAATTGTTGAAAAACTCATTAATTTTCTTCGTAAAATCGGAGAAGTTTGGACCCCAAAAACATGATTTCCAAGCAGCGGAGTTCTGTAGGATCTACAATGTTTCCCTCTACTCAGCCTTTCTTGAAAGTTTCTGTTACTGATCCTGTGAAGATGGGCAATGGAGTCCAAGCTTATGTGTCCTATCGCGTTA
TTACTAAGACAAACATGCCTGAATATCGAGGCCCAGAGAAGATTGTTATTAGGCGATACAGTGATTTTGTCTGGTTGCATGAGCGATTGGCAGAAAGGAACAAGGGTATTTTTATTCCACCTCTTCCAGAAAAAAGTGCCGTAGAGAAGTTTCGCTTCAGTGCAGAGTTTATAGAGTTGAGACGTCGAGGATTGGATGTC
TTTATAAATCGAATTGCTTCTCATCCACAGCTGCAACGTAGTGAAGATTTGAAGCATTTCTTACAGGCAGAAGAAGAGGCAATGGAACGAGTAAGATCTTTGGAAACCAGCATTTTTGGGAAGAAACCTAGTGAATTTATGCAAATATTTAAGGATGTACAGACCAAGGTAAGTGATGTTGTGCTTGGTAAGGAAAAGCC
AATTGAAGAGTCTGATCCTGAATATGAAAAGCTTAAACATTACATTTTTGAGTTGGAAGATCATTTGTCAGAGGCCCAAAAACAAGCATTCCGCCTAGTGAAGAGGCACCGAGAGTTGGGACAGTCCTTGGTTGACTTTGGGAAGGCAGTCAAGCTACTTGGTACTTGTGAAGGAGGTTCTCTTGGAAAAGCATTTTCAG
AGCTTGGGTCCCAGTCTGAGTTGCTTTCATTCAAACTTCAGAAAGAGGCACAAGATCTTTTGATGAACTTTGAAGAACCATTAAAAGACTACGTGCGTACGGTCCAGTCCATTAAGGCAACTATGGCAGATAGAGCACAAGCTTTCAGGCAGCAATGCGAATTGACAGAGACAGCCAAGTTGAAGGAGATCAATGTgtat
gtattccgttgcaacaatgtttttgccctatttattgaagttatttaacaatttgcaaatttttattattatttttgattctgtgttagCAATTTTGACTTGTGTTGTGTTTAGGGAGCGTTTGAAAGCAACAAGGCAGGAACACAAAGTGCCTGAAGCAGAAGCAGATTATAGAGAAGTTAAGGCTCAGAGCGAGGAAG
CAACTAAACAACTAGAGACAATCATACAATTAATGAATGAGGAAATCATACGCTTCCAGGAAGAGAAAACACTTGATTTAGGTTTTGTATTTCATGAATTTGCAAAAGGGCAGGCACAGCTTGCAAATGATATTGCAGATGCTTGGCGCAACCTTCTTCCTAAATTGGAAAATTGCTCTCAAAATGCCAGAGAAAATGTA
GATTCTTCCACATAGCAGTTGCGCAAATAGATGATGTATTTGGAAAAAACGATTTTGTAATCTGTAGCACAAAATCATCTTTGTAAATAATGCGTTTGATTGATTCATTGCATTCGATTAAAATGTGACTCGAGTGCTGATTTGCACACTAAGTGTGTTCTATATCAGATACTGCACATTTTGATCAGTGTGTTTCCCAT
CAAATGGTATGGTAGAGGGCTTGTTTGTTGACCATGCCGTCTCAAGGTTCTACCATCAGCAATTAAATTTCAGTAACGTTTTGAGCTGTTCAATATAGGAGTGATAGTTCAGAAATCATACCCGCTATGATTTTCCACCGTGGGATTATGTTTAATAAACACAGTATGGTTAATGCAATGTTCTGCTACTTTAAAATGCT
GGAAATCATTTTTCTTTTGAAAATATTGGAG
Intron 2 GTATGTATTC ... TTGTGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.73 | 34 | 7.7 | 6 |
| A2 | 20.51 | 31 | 4 | 12 |
| A3 | 20.16 | 33.7 | 6 | 11 |
| A4 | 10.34 | 13 | 0 | 3 |
| A5 | 17.78 | 10 | 0 | 4.3 |
| A6 | 26.53 | 60 | 14.3 | 29 |
| A7 | 18.49 | 104.3 | 17.7 | 29.7 |
| A8 | 17.18 | 86 | 15 | 20.7 |
| A9 | 18.84 | 102 | 15.3 | 32 |
| A10 | 19.81 | 85 | 8 | 34 |
>TRINITY_DN114606_c5_g2_i1 from sample A3 / Example spliced isoformTAAATAATCGCCCCTCACGAGGCAATCTTGTAATTAAATATTAAAATTTTCAAAGACCATGCCCATAGCTTTGAAACATCAAACCTCACTAATAACGATAACCAGTCCATCGTACTTCATCCATTAATCTTCTACTTGTATCCGTCCATCGCCTTGCATTTCTTTCGCGCAGGGCTGTTACGTATTGACGGCATCTAGTT
TGAAGCGTTCAATTGTTGAAAAACTCATTAATTTTCTTCGTAAAATCGGAGAAGTTTGGACCCCAAAAACATGATTTCCAAGCAGCGGAGTTCTGTAGGATCTACAATGTTTCCCTCTACTCAGCCTTTCTTGAAAGTTTCTGTTACTGATCCTGTGAAGATGGGCAATGGAGTCCAAGCTTATGTGTCCTATCGCGTTA
TTACTAAGACAAACATGCCTGAATATCGAGGCCCAGAGAAGATTGTTATTAGGCGATACAGTGATTTTGTCTGGTTGCATGAGCGATTGGCAGAAAGGAACAAGGGTATTTTTATTCCACCTCTTCCAGAAAAAAGTGCCGTAGAGAAGTTTCGCTTCAGTGCAGAGTTTATAGAGTTGAGACGTCGAGGATTGGATGTC
TTTATAAATCGAATTGCTTCTCATCCACAGCTGCAACGTAGTGAAGATTTGAAGCATTTCTTACAGGCAGAAGAAGAGGCAATGGAACGAGTAAGATCTTTGGAAACCAGCATTTTTGGGAAGAAACCTAGTGAATTTATGCAAATATTTAAGGATGTACAGACCAAGGTAAGTGATGTTGTGCTTGGTAAGGAAAAGCC
AATTGAAGAGTCTGATCCTGAATATGAAAAGCTTAAACATTACATTTTTGAGTTGGAAGATCATTTGTCAGAGGCCCAAAAACAAGCATTCCGCCTAGTGAAGAGGCACCGAGAGTTGGGACAGTCCTTGGTTGACTTTGGGAAGGCAGTCAAGCTACTTGGTACTTGTGAAGGAGGTTCTCTTGGAAAAGCATTTTCAG
AGCTTGGGTCCCAGTCTGAGTTGCTTTCATTCAAACTTCAGAAAGAGGCACAAGATCTTTTGATGAACTTTGAAGAACCATTAAAAGACTACGTGCGTACGGTCCAGTCCATTAAGGCAACTATGGCAGATAGAGCACAAGCTTTCAGGCAGCAATGCGAATTGACAGAGACAGCCAAGTTGAAGGAGATCAATGTGGAG
CGTTTGAAAGCAACAAGGCAGGAACACAAAGTGCCTGAAGCAGAAGCAGATTATAGAGAAGTTAAGGCTCAGAGCGAGGAAGCAACTAAACAACTAGAGACAATCATACAATTAATGAATGAGGAAATCATACGCTTCCAGGAAGAGAAAACACTTGATTTAGGTTTTGTATTTCATGAATTTGCAAAAGGGCAGGCACA
GCTTGCAAATGATATTGCAGATGCTTGGCGCAACCTTCTTCCTAAATTGGAAAATTGCTCTCAAAATGCCAGAGAAAATGTAGATTCTTCCACATAGCAGTTGCGCAAATAGATGATGTATTTGGAAAAAACGATTTTGTAATCTGTAGCACAAAATCATCTTTGTAAATAATGCGTTTGATTGATTCATTGCATTCGAT
TAAAATGTGACTCGAGTGCTGATTTGCACACTAAGTGTGTTCTATATCAGATACTGCACATTTTGATCAGTGTGTTTCCCATCAAATGGTATGGTAGAGGGCTTGTTTGTTGACCATGCCGTCTCAAGGTTCTACCATCAGCAATTAAATTTCAGTAACGTTTTGAGCTGTTCAATATAGGAGTGATAGTTCAGAAATCA
TACCCGCTATGATTTTCCACCGTGGGATTATGTTTAATAAACACAGTATGGTTAATGCAATGTTCTGCTACTTTAAAATGCTGGAAATCATTTTTCTTTTGAAAATATTGGAG
>TRINITY_DN114606_c5_g2_i2 from sample A3 / Example unspliced isoform:TAAATAATCGCCCCTCACGAGGCAATCTTGTAATTAAATATTAAAATTTTCAAAGACCATGCCCATAGCTTTGAAACATCAAACCTCACTAATAACGATAACCAGTCCATCGTACTTCATCCATTAATCTTCTACTTGTATCCGTCCATCGCCTTGCATTTCTTTCGCGCAGGGCTGTTACGTATTGACGGCATCTAGTT
TGAAGCGTTCAATTGTTGAAAAACTCATTAATTTTCTTCGTAAAATCGGAGAAGTTTGGACCCCAAAAACATGATTTCCAAGCAGCGGAGTTCTGTAGGATCTACAATGTTTCCCTCTACTCAGCCTTTCTTGAAAGTTTCTGTTACTGATCCTGTGAAGATGGGCAATGGAGTCCAAGCTTATGTGTCCTATCGCGTTA
TTACTAAGACAAACATGCCTGAATATCGAGGCCCAGAGAAGATTGTTATTAGGCGATACAGTGATTTTGTCTGGTTGCATGAGCGATTGGCAGAAAGGAACAAGGGTATTTTTATTCCACCTCTTCCAGAAAAAAGTGCCGTAGAGAAGTTTCGCTTCAGTGCAGAGTTTATAGAGTTGAGACGTCGAGGATTGGATGTC
TTTATAAATCGAATTGCTTCTCATCCACAGCTGCAACGTAGTGAAGATTTGAAGCATTTCTTACAGGCAGAAGAAGAGGCAATGGAACGAGTAAGATCTTTGGAAACCAGCATTTTTGGGAAGAAACCTAGTGAATTTATGCAAATATTTAAGGATGTACAGACCAAGGTAAGTGATGTTGTGCTTGGTAAGGAAAAGCC
AATTGAAGAGTCTGATCCTGAATATGAAAAGCTTAAACATTACATTTTTGAGTTGGAAGATCATTTGTCAGAGGCCCAAAAACAAGCATTCCGCCTAGTGAAGAGGCACCGAGAGTTGGGACAGTCCTTGGTTGACTTTGGGAAGGCAGTCAAGCTACTTGGTACTTGTGAAGGAGGTTCTCTTGGAAAAGCATTTTCAG
AGCTTGGGTCCCAGTCTGAGTTGCTTTCATTCAAACTTCAGAAAGAGGCACAAGATCTTTTGATGAACTTTGAAGAACCATTAAAAGACTACGTGCGTACGGTCCAGTCCATTAAGGCAACTATGGCAGATAGAGCACAAGCTTTCAGGCAGCAATGCGAATTGACAGAGACAGCCAAGTTGAAGGAGATCAATGTgtat
gtattccgttgcaacaatgtttttgccctatttattgaagttatttaacaatttgcaaatttttattattatttttgattctgtgttagcaattttgacttgtgttgtgtttagGGAGCGTTTGAAAGCAACAAGGCAGGAACACAAAGTGCCTGAAGCAGAAGCAGATTATAGAGAAGTTAAGGCTCAGAGCGAGGAAG
CAACTAAACAACTAGAGACAATCATACAATTAATGAATGAGGAAATCATACGCTTCCAGGAAGAGAAAACACTTGATTTAGGTTTTGTATTTCATGAATTTGCAAAAGGGCAGGCACAGCTTGCAAATGATATTGCAGATGCTTGGCGCAACCTTCTTCCTAAATTGGAAAATTGCTCTCAAAATGCCAGAGAAAATGTA
GATTCTTCCACATAGCAGTTGCGCAAATAGATGATGTATTTGGAAAAAACGATTTTGTAATCTGTAGCACAAAATCATCTTTGTAAATAATGCGTTTGATTGATTCATTGCATTCGATTAAAATGTGACTCGAGTGCTGATTTGCACACTAAGTGTGTTCTATATCAGATACTGCACATTTTGATCAGTGTGTTTCCCAT
CAAATGGTATGGTAGAGGGCTTGTTTGTTGACCATGCCGTCTCAAGGTTCTACCATCAGCAATTAAATTTCAGTAACGTTTTGAGCTGTTCAATATAGGAGTGATAGTTCAGAAATCATACCCGCTATGATTTTCCACCGTGGGATTATGTTTAATAAACACAGTATGGTTAATGCAATGTTCTGCTACTTTAAAATGCT
GGAAATCATTTTTCTTTTGAAAATATTGGAG