sp|Q84WM0|RL292_ARATH ----> Large ribosomal subunit protein eL29y

Intron 1 GTATGCCATC ... GTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	15.53	367.2	77	67.2
A2	11.31	537.8	97	68.4
A3	13.25	517.8	99.4	78.8
A4	9.44	213.4	46.6	22.2
A5	12.6	199.6	41	28.6
A6	12.99	5870.2	1036.4	872.6
A7	11.94	4196	788.4	566.4
A8	12.7	4075	760	590.4
A9	11.95	5027.8	934.8	680
A10	11.49	3153.2	606	407.4

>TRINITY_DN114079_c0_g1_i1 from sample A1 / Example spliced isoform

CCTATCTTATGTAAATAAAGCGCTAGGGTTTTGAACATGATAAGTAGGGTCTGATATAAACCCTATGCCTTAAATTCATTTGTTTTCTCATTCTCGTTGTAAGAGGAACCAGCGGCGAGTACACAAAGAAAGGAAGTTTAGCAAGACACAGGAGATGGCAAAGTCAAAGAATCATACAGCCCACAACCAGTCTTACAAAA
ATCACAAAAACGGAATCAAGAAGCCAAAAAAGCACAGACACACATCAAGAAAAGGGATGGACCCAAAATTCCTAAGGAACCAGAGGTATGCTAGGAAGCATAATCAACCTAATGGAGCTGGCTCTGGCACTGGATCTGAAGAGGAATCATAGATAATTAGATAGATGCCTCTGCCTCTTATTTTTCATGTCTCAAAATGA
GAAGCATATTGAAATGTTTTGACTCATTACTGTTAAACTATTTTTAGTTTTACTCACGTGGGTGTAGAATTTTGATTTTAATAGATACTGGAAATCAGATTATCATCTTGAAAGATTTTATCCATAGCATTGTTGATTTGATTAAGTTGGATATGCCACTTTCAGTTATGCCATGCGATCTAGGTTCCTATTTCTGTTTC
ATTCAAGTTTAACTTTTATTTTTTAACATTACTTATTAGGTTGGGCTTTTACAAGGATCGTGTTGAAGTTATATGATACGAAAGTCCATACATTTCTTTACCTCAAAATATGCATGCGTC

>TRINITY_DN114079_c0_g1_i2 from sample A1 / Example unspliced isoform:

CCTATCTTATGTAAATAAAGCGCTAGGGTTTTGAACATGATAAGTAGTGTCTGATATAAACCCTATGCCTTTGCCTTAAATTCATTTGTTTTCTCATTCTCGTTGTAAGAGGAACCAGCGGCGAGTACACAAAGAAAGGAAGTTTAGCAAGACACAGGAGATGGCAAAGTCAAAGAATCATACAGCCCACAACCAGTCTT
ACAAAAATCACAAAAACGGAATCAAGAAGCCAAAAAAGCACAGACACACATCAAGAAAAGGGgtatgccatcatttcttatactagtgtcaatattctgcaaagttacgggcttatgactgattcattgtgaggaccatgtgatgtaatttaagtactgtgatagtacggacaggtgacaatttataactaatttgtttt
tgcagATGGACCCAAAATTCCTAAGGAACCAGAGGTATGCTAGGAAGCATAATCAACCTAATGGAGCTGGCTCTGGCACTGGATCTGAAGAGGAATCATAGATAATTAGATAGATGCCTCTGCCTCTTATTTTTCATGTCTCAAAATGAGAAGCATATTGAAATGTTTTGACTCATTACTGTTAAACTATTTTTAGTTTT
ACTCACGTGGGTGTAGAATTTTGATTTTAATAGATACTGGAAATCAGATTATCATCTTGAAAGATTTTATCCATAGCATTGTTGATTTGATTAAGTTGGATATGCCACTTTCAGTTATGCCATGCGATCTAGGTTCCTATTTCTGTTTCATTCAAGTTTAACTTTTATTTTTTAACATTACTTATTAGGTTGGGCTTTTA
CAAGGATCGTGTTGAAGTTATATGATACGAAAGTCCATACATTTCTTTACCTCAAAATATGCATGCGTC