NA ----> NA
Intron 1 GCAGAATAAT ... CTTGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.6 | 117 | 65 | 76 |
| A2 | 37.91 | 86 | 42 | 63 |
| A3 | 40 | 102 | 57 | 79 |
| A4 | 34.25 | 72 | 30 | 45 |
| A5 | 39.13 | 42 | 22 | 32 |
| A6 | 41.51 | 427 | 250 | 356 |
| A7 | 41.01 | 671 | 400 | 533 |
| A8 | 42.06 | 635 | 380 | 542 |
| A9 | 42.4 | 572 | 366 | 476 |
| A10 | 40.84 | 510 | 299 | 405 |
>TRINITY_DN94816_c0_g1_i1 from sample A4 / Example spliced isoformGTGGAAATTCCGAGTCATTCAAATGCCAAAACGGTTCATCATGTATAAATTTAATTGATTAAGAACCATTGGTCCCGGATTTGATCACTTCCCTCGTATTGCAGGGTTTGTCCAGGGAAGGAGAAGGATTGGGCCAAACCGTAGCAACTCTGCTCTGATTAATTTGGTCGAATTCAAGAAATTGGATTCCCAGTGGTTGC
AATGGTGGTGATTTCGTTTTACAGAGGGAATCTGCACAAGGTTCCCGACATTCCCAGGCGATGGCCCATCCCCAAGCCCTCCATCTCTCTTCGCAACTTTAAAATGCTGCTAGACAAGCGCAACGAGGCCCTCAAGCGGCTGTACGTTCAGGATTCGGCGGAGGAGGACGAAGCCGAAGGCATGGGCGATAATGGCTGCG
CCAAAGAAGAAGACAAGTGCCCTCCCGACCCCAAAATCAGCGGAGTAAATAAGCGGAAAAGAGAGCAAGAATGCGTTGATTACGACAAGGAAATCAAATCCCCCGGGACCACAGCATGTCACCAGCTAGATGCTCCGGCTCAGATGGATTGTGATGATCCAGTCGTCCCTAAAAATGACGGATACCCAAAAATAGCCTCG
GGTTGCCACGGACCCCAGGCTTCCGAGAGTCCCAAAGCAAAGAAATCGGATGCCGATGAAATGGATGTGGTCTCAGACAAGCAGGATTCAGGTTCTGTGCCACTGGAGAAGCTTCCAGAGACTAGTAAGCCTACTCAAGAGGTCCATAAAAGTGCAGACGTTGTTGCTGACAAATTGAAGAGGAAAGTGGAATTGGAGGT
GAAGCTGAAGGAGTTGACAGAAGAGAAGCATCATCTTGTTCAAATGCTCAAGCATATTCTTAGTAATGAAGAAGAAATGAAGAAAAGAGGTCAAATGGCTGTTCAGTCATCGGCAATGCATGTTTCTATTCCTTGTCAAGGAGAAACTACAGCTGATGGATCCCATACAAGACAGGCTGGCCGCAATTTTTATGGCGATC
TAGAAGAAGGAGAGCTGGAGGATGCTTGCACTCCAAGTCCACATTCACACAATTTGCATAATGTACTTGGTCCAGCAGGATCTCTGGGTTCGGTTCTTGGCCGTCCGCCAAATAGTTTGCAACAACAAATCCAGTCCTCCCAACAGACGAAGACTGGTTTAACAGTTCTTGGTCATTCGCCGCATAATCCTAATCCTTCG
CAAGGTCTTTTGGCAAGTCCTTCACTACTTGGGGCATATGGAGCACACACCCAACATGCACATTTACCGCCATTGTCAATTTCTGGTACTCTGGTTGCAACCTCCTCACCTTCTCCAGCTGCATCAAGTGGTACATCTATCCTTCGTGATACACGCCGAACAAGTCCATCATGGAATCATAGATAACGTTCTCTCATATT
GTGTTGACCTCAGCACGCAATTGTTGTAAGTTATAACCACCTGAACCTAGGTTGGATGTATCATATGATGTGGCTTGTCTCGTTGATTGACATTTCCATTGACACCTGCTGTGGAGATGTTACTTAGTTTGAAGGAGACTTCTTTTGCAAACTACTTTATTCTAACGAGGATCGATCTGTATAGAATGAAAGAAAAATTT
AACCTATCTTAACACAAAACATGCTAACAACCAACCTTTGGTTGTATTGTACTACCATGTACACAAATATCTATATTTTGTAACTGTGGTTTTGTATATCAATTTACGCAAATGAGGAATCATGTTTGTCTCAAAA
>TRINITY_DN94816_c0_g1_i2 from sample A4 / Example unspliced isoform:GTGGAAATTCCGAGTCATTCAAATGCCAAAACGGTTCATCATGTATAAATTTAATTGATTAAGAACCATTGGTCCCGGATTTGATCACTTCCCTCGTATTGCAGGGTTTGTCCAGGGAAGGAGAAGGATTGGGCCAAACCGTAGCAACTCTGCTCTGATTAATTTGGTCGAATTCAAGAAATTGGATTCCCAGTGGTTGC
AATGGTGGTGATTTCGTTTTACAGAGGGAATCTGCACAAGGTTCCCGACATTCCCAGGCGATGGCCCATCCCCAAGCCCTCCATCTCTCTTCGCAACTTTAAAATGCTGCTAGACAAGCGCAACGAGGCCCTCAAGCGGCTGTACGTTCAGGATTCGGCGGAGGAGGACGAAGCCGAAGGCATGGGCGATAATGGCTGCG
CCAAAGAAGAAGACAAGTGCCCTCCCGACCCCAAAATCAGCGGAGTAAATAAGCGGAAAAGAGAGCAAGAATGCGTTGATTACGACAAGGAAATCAAATCCCCCGGGACCACAGCATGTCACCAGCTAGATGCTCCGGCTCAGATGGATTGTGATGATCCAGTCGTCCCTAAAAATGACGGATACCCAAAAATAGCCTCG
GGTTGCCACGGACCCCAGGCTTCCGAGAGTCCCAAAGCAAAGAAATCGGATGCCGATGAAATGGATGTGGTCTCAGACAAGCAGGATTCAGGTTCTGTGCCACTGGAGAAGCTTCCAGAGACTAGTAAGCCTACTCAAGAGGTCCATAAAAGTGCAGACGTTGTTGCTGACAAATTGAAGAGGAAAGTGGAATTGGAGGT
GAAGCTGAAGGAGTTGACAGAAGAGAAGCATCATCTTGTTCAAATGCTCAAGCATgcagaataatttgtaaacttgtcacagATTCTTAGTAATGAAGAAGAAATGAAGAAAAGAGGTCAAATGGCTGTTCAGTCATCGGCAATGCATGTTTCTATTCCTTGTCAAGGAGAAACTACAGCTGATGGATCCCATACAAGAC
AGGCTGGCCGCAATTTTTATGGCGATCTAGAAGAAGGAGAGCTGGAGGATGCTTGCACTCCAAGTCCACATTCACACAATTTGCATAATGTACTTGGTCCAGCAGGATCTCTGGGTTCGGTTCTTGGCCGTCCGCCAAATAGTTTGCAACAACAAATCCAGTCCTCCCAACAGACGAAGACTGGTTTAACAGTTCTTGGT
CATTCGCCGCATAATCCTAATCCTTCGCAAGGTCTTTTGGCAAGTCCTTCACTACTTGGGGCATATGGAGCACACACCCAACATGCACATTTACCGCCATTGTCAATTTCTGGTACTCTGGTTGCAACCTCCTCACCTTCTCCAGCTGCATCAAGTGGTACATCTATCCTTCGTGATACACGCCGAACAAGTCCATCATG
GAATCATAGATAACGTTCTCTCATATTGTGTTGACCTCAGCACGCAATTGTTGTAAGTTATAACCACCTGAACCTAGGTTGGATGTATCATATGATGTGGCTTGTCTCGTTGATTGACATTTCCATTGACACCTGCTGTGGAGATGTTACTTAGTTTGAAGGAGACTTCTTTTGCAAACTACTTTATTCTAACGAGGATC
GATCTGTATAGAATGAAAGAAAAATTTAACCTATCTTAACACAAAACATGCTAACAACCAACCTTTGGTTGTATTGTACTACCATGTACACAAATATCTATATTTTGTAACTGTGGTTTTGTATATCAATTTACGCAAATGAGGAATCATGTTTGTCTCAAAA
Intron 2 GTAAATTTCA ... CTTGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22 | 117 | 18.3 | 33 |
| A2 | 30.65 | 86 | 10 | 38 |
| A3 | 23.88 | 102 | 6.3 | 32 |
| A4 | 21.74 | 72 | 4.7 | 20 |
| A5 | 23.64 | 42 | 3.3 | 13 |
| A6 | 27.87 | 427 | 9.3 | 165 |
| A7 | 25.2 | 671 | 17.7 | 226 |
| A8 | 27.84 | 635 | 16.7 | 245 |
| A9 | 25.71 | 572 | 16.3 | 198 |
| A10 | 25.98 | 510 | 12.7 | 179 |
>TRINITY_DN134298_c0_g2_i1 from sample A1 / Example spliced isoformCTCCCGTGGAAATTCCGAGTCATTCAAATGCCAAAACGGTTCATCATGTATAAATTTAATTGATTAAGAACCATTGGTCCCGGATTTGATCACTTCCCTCGTATTGCAGGGTTTGTCCAGGGAAGGAGAAGGATTGGGCCAAACCGTAGCAACTCTGCTCTGATTAATTTGGTCGAATTCAAGAAATTGGATTCCCAGTG
GTTGCAATGGTGGTGATTTCGTTTTACAGAGGGAATCTGCACAAGGTTCCCGACATTCCCAGGCGATGGCCCATCCCCAAGCCCTCCATCTCTCTTCGCAACTTTAAAATGCTGCTAGACAAGCGCAACGAGGCCCTCAAGCGGCTGTACGTTCAGGATTCGGCGGAGGAGGACGAAGCCGAAGGCATGGGCGATAATGG
CTGCGCCAAAGAAGAAGACAAGTGCCCTCCCGACCCCAAAATCAGCGGAGTAAATAAGCGGAAAAGAGAGCAAGAATGCGTTGATTACGACAAGGAAATCAAATCCCCCGGGACCACAGCATGTCACCAGCTAGATGCTCCGGCTCAGATGGATTGTGATGATCCAGTCGTCCCTAAAAATGACGGATACCCAAAAATAG
CCTCGGGTTGCCACGGACCCCAGGCTTCCGAGAGTCCCAAAGCAAAGAAATCGGATGCCGATGAAATGGATGTGGTCTCAGACAAGCAGGATTCAGGTTCTGTGCCACTGGAGAAGCTTCCAGAGACTAGTAAGCCTACTCAAGAGGTCCATAAAAGTGCAGACGTTGTTGCTGACAAATTGAAGAGGAAAGTGGAATTG
GAGGTGAAGCTGAAGGAGTTGACAGAAGAGAAGCATCATCTTGTTCAAATGCTCAAGCATATTCTTAGTAATGAAGAAGAAATGAAGAAAAGAGGTCAAATGGCTGTTCAGTCATCGGCAATGCATGTTTCTATTCCTTGTCAAGGAGAAACTACAGCTGATGGATCCCATACAAGACAGGCTGGCCGCAATTTTTATGG
CGATCTAGAAGAAGGAGAGCTGGAGGATGCTTGCACTCCAAGTCCACATTCACACAATTTGCATAATGTACTTGGTCCAGCAGGATCTCTGGGTTCGGTTCTTGGCCGTCCGCCAAATAGTTTGCAACAACAAATCCAGTCCTCCCAACAGACGAAGACTGGTTTAACAGTTCTTGGTCATTCGCCGCATAATCCTAATC
CTTCGCAAGGTCTTTTGGCAAGTCCTTCACTACTTGGGGCATATGGAGCACACACCCAACATGCACATTTACCGCCATTGTCAATTTCTGGTACTCTGGTTGCAACCTCCTCACCTTCTCCAGCTGCATCAAGTGGTACATCTATCCTTCGTGATACACGCCGAACAAGTCCATCATGGAATCATAGATAACGTTCTCTC
ATATTGTGTTGACCTCAGCACGCAATTGTTGTAAGTTATAACCACCTGAACCTAGGTTGGATGTATCATATGATGTGGCTTGTCTCGTTGATTGACATTTCCATTGACACCTGCTGTGGAGATGTTACTTAGTTTGAAGGAGACTTCTTTTGCAAACTACTTTATTCTAACGAGGATCGATCTGTATAGAATGAAAGAAA
AATTTAACCTATCTTAACACAAAACATGCTAACAACCAACCTTTGGTTGTATTGTACTACCATGTACACAAATATCTATATTTTGTAACTGTGGTTTTGTATATCAATTTACGCAAATGAGGAATCATGTTTGTCTCATTTTTTGGAGATCCCTCCTCTCGGAGAATTTTCGGGAAATTACTTTTAGGCTAGGATGCAGT
ATATTTATATCACATTATTTCTCAAATTTTGCTTCTTTATTCTGGTGTAGATGAATGCATCGCTTTGTCGGAACTGTATAGATTTAAACAGGTAATTCATGCATTACAGCACTGATCATGGTGATGACTATGCATTGATTCATTGTAATACTTAGTACAAAATATCTCAATTCTTCTAATTATGTAATATTGCATAGTAG
ATGCGGATGAGGATTTTAGTATTTTTCATATCTTGGGTTTCCTCTCCCCTTGTAGAGGGTTTGGGAATTTTACTTTGTGTTTAGTGTACCTTATGTTTATATAGACAGCCGGAGGAACATTTCAGGTTTTCGATGTTTTGAGATCAGTTTCCTTTACAAACAGTCATGCGTGCTATCAGTATTTGAAGTAGATGAATGTT
CAAATTTAGCCAATAGATCGTCATTTTTTATAGGATTTCGAGGA
>TRINITY_DN134298_c0_g2_i2 from sample A1 / Example unspliced isoform:CTCCCGTGGAAATTCCGAGTCATTCAAATGCCAAAACGGTTCATCATGTATAAATTTAATTGATTAAGAACCATTGGTCCCGGATTTGATCACTTCCCTCGTATTGCAGGGTTTGTCCAGGGAAGGAGAAGGATTGGGCCAAACCGTAGCAACTCTGCTCTGATTAATTTGGTCGAATTCAAGAAATTGGATTCCCAGTG
GTTGCAATGGTGGTGATTTCGTTTTACAGAGGGAATCTGCACAAGGTTCCCGACATTCCCAGGCGATGGCCCATCCCCAAGCCCTCCATCTCTCTTCGCAACTTTAAAATGCTGCTAGACAAGCGCAACGAGGCCCTCAAGCGGCTGTACGTTCAGGATTCGGCGGAGGAGGACGAAGCCGAAGGCATGGGCGATAATGG
CTGCGCCAAAGAAGAAGACAAGTGCCCTCCCGACCCCAAAATCAGCGGAGTAAATAAGCGGAAAAGAGAGCAAGAATGCGTTGATTACGACAAGGAAATCAAATCCCCCGGGACCACAGCATGTCACCAGCTAGATGCTCCGGCTCAGATGGATTGTGATGATCCAGTCGTCCCTAAAAATGACGGATACCCAAAAATAG
CCTCGGGTTGCCACGGACCCCAGGCTTCCGAGAGTCCCAAAGCAAAGAAATCGGATGCCGATGAAATGGATGTGGTCTCAGACAAGCAGGATTCAGGTTCTGTGCCACTGGAGAAGCTTCCAGAGACTAGTAAGCCTACTCAAGAGGTCCATAAAAGTGCAGACGTTGTTGCTGACAAATTGAAGAGGAAAGTGGAATTG
GAGGTGAAGCTGAAGGAGTTGACAGAAGAGAAGCATCATCTTGTTCAAATGCTCAAGCATgtaaatttcacctttgaccttgtttctgttaatcttatgtttcttagcatgcgtttctgcagctggtaaaatcaaaataagtttagattttgttttgtggcatgtgagtcatttggttcacagttgctaaattttaccta
aaacatgactatctagtatccgtgtgatctgtttttaccacatttttattgacagacagctgtattgctattttatccaagcaggcagaataatttgtaaacttgtcacagATTCTTAGTAATGAAGAAGAAATGAAGAAAAGAGGTCAAATGGCTGTTCAGTCATCGGCAATGCATGTTTCTATTCCTTGTCAAGGAGA
AACTACAGCTGATGGATCCCATACAAGACAGGCTGGCCGCAATTTTTATGGCGATCTAGAAGAAGGAGAGCTGGAGGATGCTTGCACTCCAAGTCCACATTCACACAATTTGCATAATGTACTTGGTCCAGCAGGATCTCTGGGTTCGGTTCTTGGCCGTCCGCCAAATAGTTTGCAACAACAAATCCAGTCCTCCCAAC
AGACGAAGACTGGTTTAACAGTTCTTGGTCATTCGCCGCATAATCCTAATCCTTCGCAAGGTCTTTTGGCAAGTCCTTCACTACTTGGGGCATATGGAGCACACACCCAACATGCACATTTACCGCCATTGTCAATTTCTGGTACTCTGGTTGCAACCTCCTCACCTTCTCCAGCTGCATCAAGTGGTACATCTATCCTT
CGTGATACACGCCGAACAAGTCCATCATGGAATCATAGATAACGTTCTCTCATATTGTGTTGACCTCAGCACGCAATTGTTGTAAGTTATAACCACCTGAACCTAGGTTGGATGTATCATATGATGTGGCTTGTCTCGTTGATTGACATTTCCATTGACACCTGCTGTGGAGATGTTACTTAGTTTGAAGGAGACTTCTT
TTGCAAACTACTTTATTCTAACGAGGATCGATCTGTATAGAATGAAAGAAAAATTTAACCTATCTTAACACAAAACATGCTAACAACCAACCTTTGGTTGTATTGTACTACCATGTACACAAATATCTATATTTTGTAACTGTGGTTTTGTATATCAATTTACGCAAATGAGGAATCATGTTTGTCTCATTTTTTGGAGA
TCCCTCCTCTCGGAGAATTTTCGGGAAATTACTTTTAGGCTAGGATGCAGTATATTTATATCACATTATTTCTCAAATTTTGCTTCTTTATTCTGGTGTAGATGAATGCATCGCTTTGTCGGAACTGTATAGATTTAAACAGGTAATTCATGCATTACAGCACTGATCATGGTGATGACTATGCATTGATTCATTGTAAT
ACTTAGTACAAAATATCTCAATTCTTCTAATTATGTAATATTGCATAGTAGATGCGGATGAGGATTTTAGTATTTTTCATATCTTGGGTTTCCTCTCCCCTTGTAGAGGGTTTGGGAATTTTACTTTGTGTTTAGTGTACCTTATGTTTATATAGACAGCCGGAGGAACATTTCAGGTTTTCGATGTTTTGAGATCAGTT
TCCTTTACAAACAGTCATGCGTGCTATCAGTATTTGAAGTAGATGAATGTTCAAATTTAGCCAATAGATCGTCATTTTTTATAGGATTTCGAGGA