NA ----> NA
Intron 1 GTATAACAGT ... CTTGAGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.9 | 4 | 8 | 5 |
| A2 | 63.64 | 2 | 3 | 4 |
| A3 | 100 | 0 | 1 | 0 |
| A4 | 75 | 1 | 3 | 3 |
| A5 | 60 | 1 | 3 | 0 |
| A6 | 33.33 | 2 | 2 | 0 |
| A7 | 28.57 | 5 | 4 | 0 |
| A8 | 30.43 | 8 | 1 | 6 |
| A9 | 33.33 | 2 | 0 | 2 |
| A10 | 26.67 | 11 | 2 | 6 |
>TRINITY_DN37085_c0_g1_i2 from sample A8 / Example spliced isoformGGGACTTCATTGCTTTGCAGCTTTATTTCTTGTATTTTAAGCTTTTGCCTTTTGTTTAACTTTTGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTA
TCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCACAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCAT
TTTGTGGTCAATTAAAGCTTCCAGTGAGTACCGGAAACACCTAGTATCACTTTCCCCAGTGCTCTGTCCATGTTCTTGTAGATCACACGGCCGCTGAGCTGCCAAAAACTCATTCCATGTGACTTCTTTTTAATAATGTCCATTACATGCCAGAAACCGTGATTTCCTCCCACATCTTCTTCCATTTCATAAAAGCATGT
CTTACGAACGATCTTTTTGTGTAGAGAGGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATAGCTCCAAGAAATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAGATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACA
ATTTCAAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAAAGTGCCAGGAATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCTGTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTT
GTTTTTGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATTCTAAATCACCATTGATTTATCTTAAGGGTAGAGAATTCTGGATTTTAGAAAAGGATTTGATCTTTCTTGACTCAGGGTAAATTTTTAGTTTAAATGGGTCTTTAACTCATTTACATGATATCTCCACTCCAACTCTG
TAACTAAATTCAGTTTCCTTCTCTACTAAAACACGGACAGG
>TRINITY_DN37085_c0_g1_i6 from sample A8 / Example unspliced isoform:GGGACTTCATTGCTTTGCAGCTTTATTTCTTGTATTTTAAGCTTTTGCCTTTTGTTTAACTTTTGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTA
TCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCACAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCAT
TTTGTGGTCAATTAAAGCTTCCAGTGAGTACCGGAAACACCTAGTATCACTTTCCCCAGTGCTCTGTCCATGTTCTTGTAGATCACACGGCCGCTGAGCTGCCAAAAACTCATTCCATGTGACTTCTTTTTAATAATGTCCATTACATGCCAGAAACCGTGATTTCCTCCCACATCTTCTTCCATTTCATAAAAGCATGT
CTTACGAACGATCTTTTTGTGTAGAGAGgtataacagtaaatctttgactggttattttgctattaagcaacttttggtgtgaaaattctctttagcagccattttcttgctcttcaacactaactaaggggcttataccttgaggcagGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATAGCTCCAAGAA
ATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAGATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACAATTTCAAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAAAGTGCCAGGA
ATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCTGTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTTGTTTTTGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATTCTAAATCACCATTGAT
TTATCTTAAGGGTAGAGAATTCTGGATTTTAGAAAAGGATTTGATCTTTCTTGACTCAGGGTAAATTTTTAGTTTAAATGGGTCTTTAACTCATTTACATGATATCTCCACTCCAACTCTGTAACTAAATTCAGTTTCCTTCTCTACTAAAACACGGACAGG
Intron 2 GTTTGATTTT ... GAGACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 25 | 6 | 3 | 1 |
| A3 | 24.37 | 6.9 | 3 | 1.4 |
| A4 | 100 | 0 | 1 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 23.61 | 6.7 | 3 | 1.1 |
| A7 | 29.44 | 16.4 | 9 | 4.7 |
| A8 | 46.49 | 4.9 | 4 | 4.4 |
| A9 | 38.27 | 6.7 | 5 | 3.3 |
| A10 | 36.74 | 17.7 | 15 | 5.6 |
>TRINITY_DN39609_c0_g1_i2 from sample A7 / Example spliced isoformGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTATCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCA
CAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCATTTTGTGGTCAATTAAAGCTTCCAGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATA
GCTCCAAGAAATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAGATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACAATTTCAAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAA
AGTGCCAGGAATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCTGTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTTGTTTTTGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATTCTCAAT
CACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATT
>TRINITY_DN39609_c0_g1_i7 from sample A7 / Example unspliced isoform:GCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTATCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCA
CAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGgtttgattttttattaggttttgcgagacttcagCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCATTTTGTGGTCAATTAAAGCTTCCAAAACCGT
GATTTCCTCCCACATCTTCTTCCATTTCATAAAAGCATGTCTTACGAACGATCTTTTTGTGTAGAGAGGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATAGCTCCAAGAAATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAG
ATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACAATTTCAAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAAAGTGCCAGGAATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCT
GTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTTGTTTTTGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATT
Intron 3 GTGAGTACCG ... GTGTAGAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 3 | 5 | 4 |
| A2 | 38.5 | 5.3 | 4.3 | 2 |
| A3 | 46.63 | 3.5 | 5.7 | 0 |
| A4 | 100 | 0 | 2 | 1 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 46.56 | 4.7 | 6 | 2 |
| A7 | 68.6 | 6.8 | 24.8 | 5 |
| A8 | 37.58 | 11.3 | 5.7 | 8 |
| A9 | 47.06 | 5.2 | 7.2 | 2 |
| A10 | 52.28 | 13.5 | 18.5 | 11 |
>TRINITY_DN31082_c0_g1_i1 from sample A6 / Example spliced isoformGGGACTTCATTGCTTTGCAGCTTTATTTCTTGTATTTTAAGCTTTTGCCTTTTGTTTAACTTTTGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTA
TCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCACAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCAT
TTTGTGGTCAATTAAAGCTTCCAGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATAGCTCCAAGAAATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAGATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACAATTTC
AAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAAAGTGCCAGGAATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCTGTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTTGTTTT
TGTTAGTATATTCTCAAT
>TRINITY_DN31082_c0_g1_i3 from sample A6 / Example unspliced isoform:GGGACTTCATTGCTTTGCAGCTTTATTTCTTGTATTTTAAGCTTTTGCCTTTTGTTTAACTTTTGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTA
TCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCACAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCAT
TTTGTGGTCAATTAAAGCTTCCAgtgagtaccggaaacacctagtatcactttccccagtgctctgtccatgttcttgtagatcacacggccgctgagctgccaaaaactcattccatgtgacttctttttaataatgtccattacatgccagaaaccgtgatttcctcccacatcttcttccatttcataaaagcatgt
cttacgaacgatctttttgtgtagagagGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATAGCTCCAAGAAATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAGATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACA
ATTTCAAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAAAGTGCCAGGAATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCTGTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTT
GTTTTTGTTAGTATATTCTCAAT
Intron 4 GTGAGTACCG ... CTTGAGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 3 | 5 | 5 |
| A2 | 58.44 | 4 | 5 | 4 |
| A3 | 72.85 | 2.5 | 6 | 0 |
| A4 | 100 | 0 | 2 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 60.61 | 4 | 6 | 0 |
| A7 | 79.39 | 6.5 | 25 | 0 |
| A8 | 29.52 | 12 | 5 | 6 |
| A9 | 56.09 | 5.5 | 7 | 2 |
| A10 | 60.45 | 12.5 | 19 | 6 |
>TRINITY_DN37085_c0_g1_i5 from sample A8 / Example spliced isoformGGGACTTCATTGCTTTGCAGCTTTATTTCTTGTATTTTAAGCTTTTGCCTTTTGTTTAACTTTTGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTA
TCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCACAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCAT
TTTGTGGTCAATTAAAGCTTCCAGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATAGCTCCAAGAAATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAGATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACAATTTC
AAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAAAGTGCCAGGAATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCTGTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTTGTTTT
TGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATTCTAAATCACCATTGATTTATCTTAAGGGTAGAGAATTCTGGATTTTAGAAAAGGATTTGATCTTTCTTGACTCAGGGTAAATTTTTAGTTTAAATGGGTCTTTAACTCATTTACATGATATCTCCACTCCAACTCTGTAACT
AAATTCAGTTTCCTTCTCTACTAAAACACGGACAGG
>TRINITY_DN37085_c0_g1_i6 from sample A8 / Example unspliced isoform:GGGACTTCATTGCTTTGCAGCTTTATTTCTTGTATTTTAAGCTTTTGCCTTTTGTTTAACTTTTGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTA
TCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCACAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCAT
TTTGTGGTCAATTAAAGCTTCCAgtgagtaccggaaacacctagtatcactttccccagtgctctgtccatgttcttgtagatcacacggccgctgagctgccaaaaactcattccatgtgacttctttttaataatgtccattacatgccagaaaccgtgatttcctcccacatcttcttccatttcataaaagcatgt
cttacgaacgatctttttgtgtagagaggtataacagtaaatctttgactggttattttgctattaagcaacttttggtgtgaaaattctctttagcagccattttcttgctcttcaacactaactaaggggcttataccttgaggcagGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATAGCTCCAAGAA
ATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAGATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACAATTTCAAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAAAGTGCCAGGA
ATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCTGTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTTGTTTTTGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATTCTAAATCACCATTGAT
TTATCTTAAGGGTAGAGAATTCTGGATTTTAGAAAAGGATTTGATCTTTCTTGACTCAGGGTAAATTTTTAGTTTAAATGGGTCTTTAACTCATTTACATGATATCTCCACTCCAACTCTGTAACTAAATTCAGTTTCCTTCTCTACTAAAACACGGACAGG
Intron 5 GTGAGTACCG ... TACATGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.64 | 2 | 5 | 2 |
| A2 | 100 | 0 | 3 | 0 |
| A3 | 31.5 | 6 | 4.6 | 1 |
| A4 | 100 | 0 | 2 | 2 |
| A5 | 100 | 0 | 0 | 1.8 |
| A6 | 75.21 | 2 | 6 | 6.2 |
| A7 | 72.22 | 7 | 24.4 | 12 |
| A8 | 51.03 | 5 | 6.6 | 4 |
| A9 | 63.38 | 3 | 7.4 | 3 |
| A10 | 73.8 | 4 | 17.6 | 5 |
>TRINITY_DN39609_c0_g1_i7 from sample A7 / Example spliced isoformGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTATCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCA
CAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGGTTTGATTTTTTATTAGGTTTTGCGAGACTTCAGCTTTGCGGTTGTTTTCAAGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCATTTTGTGGTCAATTAAAGCTTCCAAAACCGT
GATTTCCTCCCACATCTTCTTCCATTTCATAAAAGCATGTCTTACGAACGATCTTTTTGTGTAGAGAGGCTTGCGCAGGATTTTCGATGGGTTGAAAACCAGATTGATAGCTCCAAGAAATCTGTGGAAGAAACAAGAAGGTTTAAATTGTTGAACTAATAACTCAAGTTTAACTCCTGACGCGGGAAGGCAATTTCAAG
ATCACAAGATTTGCTACTTTAAAAGAACGAGAGCTTGACAATTTCAAATGATTAGGTATTAGCTTTGTAGCCTTGTATGGAAGATGGACCTTCGAAGTTCGTTACAGAAAGTGCCAGGAATATCCAGCTGCAGTCATCGTATGAGTAATCTCTATATCCCTTGGCAATAGTTATCACGAATTTCTTGTGTTAGCATAGCT
GTAATTTGTTAAATTCATCGCAGAAAGCTGTTACGAATTTGTTTTTGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATTCTCAATCACCATAGATTTATCTTGAATTTGTTTTTGTTAGTATATT
>TRINITY_DN39609_c0_g1_i4 from sample A7 / Example unspliced isoform:GCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTATCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCA
CAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCATTTTGTGGTCAATTAAAGCTTCCAgtgagtaccggaaacacctagtatcactttccccagtgctctgtccatgttcttgtagat
cacacggccgctgagctgccaaaaactcattccatgtgacttctttttaataatgtccattacatgccagAAACCGTGATTTCCTCCCACATCTTCTTCCATTTCATAAAAGCATGTCTTACGAACGATCTTTTTGTGTAGAGAGGTATAACAGTAAATCTTTGACTGGTTATTTTGCTATTAAGCAACTTTTGGTGTGA
AAATTCTCTTT
Intron 6 GTTTGATTTT ... TGTTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 3 | 0 | 3 |
| A2 | 33.33 | 4 | 3 | 1 |
| A3 | 38.46 | 4 | 3 | 2 |
| A4 | 100 | 0 | 1 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 33.33 | 5 | 3 | 2 |
| A7 | 30.77 | 18 | 9 | 7 |
| A8 | 52.94 | 4 | 4 | 5 |
| A9 | 42.86 | 6 | 5 | 4 |
| A10 | 34.33 | 22 | 15 | 8 |
>TRINITY_DN39609_c0_g1_i4 from sample A7 / Example spliced isoformGCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTATCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCA
CAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCATTTTGTGGTCAATTAAAGCTTCCAGTGAGTACCGGAAACACCTAGTATCACTTTCCCCAGTGCTCTGTCCATGTTCTTGTAGAT
CACACGGCCGCTGAGCTGCCAAAAACTCATTCCATGTGACTTCTTTTTAATAATGTCCATTACATGCCAGAAACCGTGATTTCCTCCCACATCTTCTTCCATTTCATAAAAGCATGTCTTACGAACGATCTTTTTGTGTAGAGAGGTATAACAGTAAATCTTTGACTGGTTATTTTGCTATTAAGCAACTTTTGGTGTGA
AAATTCTCTTT
>TRINITY_DN39609_c0_g1_i5 from sample A7 / Example unspliced isoform:GCTAAATGGTGGAGTTTATGTTTGTTTCTGAGCAGAATAGTCATGAAATCTCAATTGTTTCTTTAAAAGGGTTCGATCTTGCAATCAAATCCCGATGGGGCTCACGTTCGAATCTCTGCACAATAAAATCGAACTATCTCTGAGCTGCCATATCGCGACCATTTGAGCTACTCGGCCTTCAATTTGATCCAAAGATTGCA
CAGGATCTTTGTGGCACGAAGGATACCGCAGATTTCGATGATATATTTTCAGAAGTGACAGGgtttgattttttattaggttttgcgagacttcagctttgcggttgttttcaagATCGCGGGAGCAATTTTGCTGTCAAATAAAGCTGGCGAGTGTTGGAATTGAGCATTTTGTGGTCAATTAAAGCTTCCAGTGAGTA
CCGGAAACACCTAGTATCACTTTCCCCAGTGCTCTGTCCATGTTCTTGTAGATCACACGGCCGCTGAGCTGCCAAAAACTCATTCCATGTGACTTCTTTTTAATAATGTCCATTACATGCCAGAAACCGTGATTTCCTCCCACATCTTCTTCCATTTCATAAAAGCATGTCTTACGAACGATCTTTTTGTGTAGAGAGGT
ATAACAGTAAATCTTTGACTGGTTATTTTGCTATTAAGCAACTTTTGGTGTGAAAATTCTCTTT