sp|Q8RY24|SPSA3_ARATH ----> Probable sucrose-phosphate synthase 3
Intron 1 GTAAGCGGCA ... TGTTTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 46 | 7 | 16 |
| A2 | 23.53 | 39 | 15 | 9 |
| A3 | 21.43 | 33 | 10 | 8 |
| A4 | 19.35 | 25 | 4 | 8 |
| A5 | 13.04 | 20 | 1 | 5 |
| A6 | 21.74 | 9 | 4 | 1 |
| A7 | 20 | 14 | 1 | 6 |
| A8 | 11.11 | 4 | 0 | 1 |
| A9 | 18.18 | 18 | 5 | 3 |
| A10 | 15.38 | 11 | 1 | 3 |
>TRINITY_DN115952_c1_g2_i2 from sample A2 / Example spliced isoformGCAGGAATAGGCCAAAGCCACGCAGAAATATTTTCCAACCCGGGAACAGGGTTGGGATCTTCTACTGGATTTTGTCCCTATGTGTTAGAGGTGTATTATGGGCTTTTGAAATAGGCTTCCGCATGTCTGCCCTTCTGTTTTTGCGGAAACCACTTCATTGAGACCATCCACGGCTCTCTCCCGAGTTATATACCCAAATA
AAAACTCTCAGGCAAGCATTACCTCTGCCTTGCCTTTGATTGTTGGGAATGGCGGCCAACGAGTGGATGAACGGGTACTTGGAGGCCATTCTCGATGGAGGAGGAGCCAATGATGATGATGATTACAGTAATCATAAGAAGGACTCTTCAGACAAGCACGGGGTCACTGTTATTCCGCAATTGGGGGCATTCAACCCTGC
TAGATATTTTATTGACGAGGTCGTCCATGGTACTGATGAGACTGATCTTCATCACTTCTGGGTCAAGGTTACCGCGACCAAAAACCCAGAGGAGCGGAACACCAGGCTTGAGAATCTTTGCTGGAGAATATGGCACATCAGCCGCAGGAAGAAAAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAGTTGCGCGTGG
AACGCGAGCGAGGCCGGAGGGACGTGACAGAAGATTTGTCGGAGGATTTGTCCGAAGGTGAGAGGTTTGGAGGAGATGGTCAAGGGTTGAAGTTATCAGAAAGCCATTTCAATCTCGAGCTGCTAGCTGAGCAACCGCATATAGAGAGACGACTTTACGTTATATTGATCAGTTTGCATGGCCTAGTGCGAGGGGAGAAT
ATGGAACTTGGCCGTGATTCCGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAGAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACACGTCAGATCTGTTCTCCTGAAGTGGATTCTAGCTATGGAGAGCCAACTGAAATGTTAACTTCTGATCATGATGAAGAAATTCATGAGAGTGG
AGGGGCATACATAGTTCGAATCCCTTGTGGATGCAAAGAAAAGTATATTGAGAAAGAATTATTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCATTGGGTCATATTCTCAACATTTCCAAAGCGTTGGGAGATCTGATTGGAGAAGGCAGATCTGTATGGCCTCATGTGATCCATGGCCACTATGCAGATGCAGGGG
ATGCTGCTTGCCTTCTTTCTGGTGCTCTCAATGTTCCAATGGTTTTGACAGGTCATTCTCTAGGCCGAAATAAACTAGAACAGTTACTGAAACAAGGATTGCATTCCAAGGAGGTTATCAATGCAACCTACAAGATCATGCGTAGGATTGAAGCTGAAGAATTGTGCATTGATTCCGCTGAGCTTGTGGTCACAAGTACA
AGGCAAGAAATTGAAGAACAATGGGGCCTGTATGATGGCTTTGATTTGGAACTGAATAAAAAACTCAGACATCGTGCCAAGCGTGGTGTCAATTGCTATGGTCGTTATATGCCTCGAATGACGGTTATACCTCCTGGAATGGACTTCAGCAATGTTATAGTGCAAGATGAGAACACAGATAATGATTCAGATAATGATTC
TACTCAATTGCCTGAGTCTCCTTTATGGGGTGAGATCCCACGGTTTTTGAACAATCCTTCAAAACCCATTATTTTGGCTCTCGCTCGACCTGATCCCAAGAAGAACATGGCCACTCTAGTCAAGGCTTTTGGTGAATGTGCCAAGTTGAGGAAGCTGGCGAACTTGATGTTGATCATGGGAAATCGAGATGATATTGATC
AAATGCCGGTAGCAAGTGCCAATGTGCTGACCACTGTCCTGAAGCTTATTGATAAGTATGATCTCTATGGAGAAGTGGCATATCCCAAACATCACAAGCAATCAGAAGTTGCTGATATATATAGGATTGCTGCAAAAACCAAGGTTTATAAAACTTCCTGTCAAATTATAAAAGAAATTATCCATTATTGCACTTCTAAT
TGACAGAAAATTTGAACTGCAATTGGTGTAGGTGAAACAAAAAGGAAAAAACTAAAGTTGGTGTAATTTTGTAATGATGATGTTCACGTGTGCAGGG
>TRINITY_DN115952_c1_g2_i3 from sample A2 / Example unspliced isoform:GCAGGAATAGGCCAAAGCCACGCAGAAATATTTTCCAACCCGGGAACAGGGTTGGGATCTTCTACTGGATTTTGTCCCTATGTGTTAGAGGTGTATTATGGGCTTTTGAAATAGGCTTCCGCATGTCTGCCCTTCTGTTTTTGCGGAAACCACTTCATTGAGACCATCCACGGCTCTCTCCCGAGTTATATACCCAAATA
AAAACTCTCAGGCAAGCATTACCTCTGCCTTGCCTTTGATTGTTGGGAATGGCGGCCAACGAGTGGATGAACGGGTACTTGGAGGCCATTCTCGATGGAGGAGGAGCCAATGATGATGATGATTACAGTAATCATAAGAAGGACTCTTCAGACAAGCACGGGGTCACTGTTATTCCGCAATTGGGGGCATTCAACCCTGC
TAGATATTTTATTGACGAGGTCGTCCATGGTACTGATGAGACTGATCTTCATCACTTCTGGGTCAAGGTTACCGCGACCAAAAACCCAGAGGAGCGGAACACCAGGCTTGAGAATCTTTGCTGGAGAATATGGCACATCAGCCGCAGGAAGAAAAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAGTTGCGCGTGG
AACGCGAGCGAGGCCGGAGGGACGTGACAGAAGATTTGTCGGAGGATTTGTCCGAAGGTGAGAGGTTTGGAGGAGATGGTCAAGGGTTGAAGTTATCAGAAAGCCATTTCAATCTCGAGCTGCTAGCTGAGCAACCGCATATAGAGAGACGACTTTACGTTATATTGATCAGTTTGCATGGCCTAGTGCGAGGGGAGAAT
ATGGAACTTGGCCGTGATTCCGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAGAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACACGTCAGATCTGTTCTCCTGAAGTGGATTCTAGCTATGGAGAGCCAACTGAAATGTTAACTTCTGATCATGATGAAGAAATTCATGAGAGTGG
AGGGGCATACATAGTTCGAATCCCTTGTGGATGCAAAGAAAAGTATATTGAGAAAGAATTATTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCATTGGGTCATATTCTCAACATTTCCAAAGCGTTGGGAGATCTGATTGGAGAAGGCAGATCTGTATGGCCTCATGTGATCCATGGCCACTATGCAGATGCAGGGG
ATGCTGCTTGCCTTCTTTCTGGTGCTCTCAATGTTCCAATGGTTTTGACAGGTCATTCTCTAGGCCGAAATAAACTAGAACAGTTACTGAAACAAGGATTGCATTCCAAGGAGGTTATCAATGCAACCTACAAGATCATGCGTAGGATTGAAGCTGAAGAATTGTGCATTGATTCCGCTGAGCTTGTGGTCACAAGTACA
AGGCAAGAAATTGAAGAACAATGGGGCCTGTATGATGGCTTTGATTTGGAACTGAATAAAAAACTCAGACATCGTGCCAAGCGTGGTGTCAATTGCTATGGTCGTTATATGCCTCGAATGACGGTTATACCTCCTGGAATGGACTTCAGCAATGTTATAGTGCAAGATGAGAACACAGATAATGATTCAGATAATGATTC
TACTCAATTGCCTGAGTCTCCTTTATGGGGTGAGgtaagcggcagggcaaggtttaattactctccacaatttaagatttcacgttcttgaaaaattatagtcctcacactgcataatagcattttttttgttttttagATCCCACGGTTTTTGAACAATCCTTCAAAACCCATTATTTTGGCTCTCGCTCGACCTGATC
CCAAGAAGAACATGGCCACTCTAGTCAAGGCTTTTGGTGAATGTGCCAAGTTGAGGAAGCTGGCGAACTTGATGTTGATCATGGGAAATCGAGATGATATTGATCAAATGCCGGTAGCAAGTGCCAATGTGCTGACCACTGTCCTGAAGCTTATTGATAAGTATGATCTCTATGGAGAAGTGGCATATCCCAAACATCAC
AAGCAATCAGAAGTTGCTGATATATATAGGATTGCTGCAAAAACCAAGGGAGTTTTCATCAATCCAGCTTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGCAGCTGCACATGGATTGCCTATGGTTGCCACAAAGAATGGAGGACCTGTAGACATTAAACAGACGTTGAAGAATGGTTTGCTGGTAGATCCCCATAA
CGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGCCGATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGAAGAACATTCATCTCTATTCTTGGCCACAGCATTGCAAAATATATTTGTCAAGGATTTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGCAAATGACCAAAATGAAAATGTGGATT
CTGAATCAGACACTGGTTCATTCAAGGATGCCCCAGATACATCCCTTAGACTCTCATTAGATGCAGATAAACCTTCGCGCTCTAATTCACTTAATAGCACTATTGAACTTGATAAGCTTCTTCAAAATGAAGATAATGGGGAGGGTATTTCTGAACACATTAGGATGATCATAGAGAAGACTAAGAACAGTCAATCTAAA
CTTAGAGAAGCAAATGATGTGAATTCACAGGACAAACAAAGTATAGATCGAAATAATAGCTTTAATTCTATGGGGAAACTACCTCTCAGGAGAAGAAAGCGTCTATTTGTGATTGCAATGGATTGCTATGATGCTATTGGAGAACCCCTTGTTAGTAAACTAGCTGTTATTATCCAAGAGATTATGAATGCAGTTCGCTC
TTTTGGCAACTTTCCATCTCCTGGATTCATCTTATCAACTGCATTAACAGTTTCAGAAACACTTTCTGTGCTTCAGTCTATTGGAGTAAAATTGTCTGCATTTGATGCTCTAATTTGCAGCAGTGGGAGCCAACTGCTGTATACAGCTGGTGATAGTCTAGATTCACCTATATATCCAGATCCAGATTATGATTCTCATA
TCGATTATCGCTGGGGTGCAGAGGGGCTGAGAAAAAGCATGAGAAAACTGAGAGGTCCAGAGAATTCTCGATTCCTAGTGGAAGATGCCGAAGCATCTAACTCCCATTGCTTGGCCTATAAAGTCAAGAATATATCCACTGCACCCAAAGCAGATGAGCTGAGGCGGCAATTGAGAATGAGAGGTTTGAGATGCCATGTG
CTTTACTCTCAAAATTGTTCCCGGCTGCGTGTGCTGCCTCTTCATGCTTCAAGATCTCAAGCTTTAAGGTACCTGTATGTTCGATGGGGCTTGGATATAGCCAATATGTACGTGTTTCTGGGGGAAAAAGGAGATACAGACTATGAAGAGATGATTGGAGGAATGCATAAGACACTGATATTGAGAGGGATCGTTTATGA
TGGAAGTGAAAAGATGGGGAGGAGTCCTACCAGCTATGGAAGAGAAGATGTTTTTCCTTCACAAAGTCCAAATATAGTGCCAGTTACTGTAAGTGATGATAAAGAAGAATTCAGCAGCCAAGAGATGATTGCAGCTCTGAAAACATTGTCTTGAGAGAAATAATTCTTCATCCCATTGTATGTAACCCGATGCCTTTTTA
CTAAAATAAAAGTTCCTAGTAAATTTTAGGAAGATGAAAACTACTCGTAATATCTCAGAAAATTTGTAAAAAACCAATCAGGTTATCAAGTATTGAATTTTGATGGAAGCCATCATATCCATGAAAGAGCTACTAGGCAATATAATGGTGTTGGACGTCCTTCAGAGGTATCAGAAGGGTTTTTGTATTTGATTATAAGC
ACATATCGGTGGTGATTGTAGCTATATAGTATCAATGCCTCACGAGTGTAAAATTTGAGAATTTCACACAAATTCTCACTCACTTTTCTACAGTTTACTTGTGTATGTAAAGCTTGGAATAAGTGTTCCACTACATGAATCAGTTTTTTTACTGGGCATGTTTGAAAAAGATGGAGCTGAATTTAGCAGGACAAAATTTG
TCAGAACTCAGTCCATTCCGTCATACTGTTCATAATAATTAGA
Intron 2 GTAAGTTTCA ... GTTTTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.71 | 37 | 20 | 3 |
| A2 | 19.05 | 34 | 10 | 6 |
| A3 | 21.67 | 47 | 10 | 16 |
| A4 | 21.62 | 29 | 7 | 9 |
| A5 | 26.32 | 35 | 17 | 8 |
| A6 | 18.28 | 38 | 11 | 6 |
| A7 | 18.1 | 43 | 10 | 9 |
| A8 | 17.92 | 71 | 17 | 14 |
| A9 | 18.75 | 52 | 14 | 10 |
| A10 | 19.63 | 86 | 26 | 16 |
>TRINITY_DN43364_c3_g1_i1 from sample A9 / Example spliced isoformCGCAGGAATAGGCCAAAGCCACGCAGAAATATTTTCCAACCCGGGAACAGGGTTGGGATCTTCTACTGGATTTTGTCCCTATGTGTTAGAGGTGTATTATGGGCTTTTGAAATAGGCTTCCGCATGTCTGCCCTTCTGTTTTTGCGGAAACCACTTCATTGAGACCATCCACGGCTTTCTCCCGAGTTATATACCCAAAT
AAAAACTCTCAGGCAAGCATTACCTCTGCCTTGCCTTTGATTGTTGGGAATGGCGGCCAACGAGTGGATGAACGGGTACTTGGAGGCCATTCTCGATGGAGGAGGAGCCAATGATGATGATGATTACAGTAATCATAAGAAGGACTCTTCAGACAAGCACGGGGTCACTGTTATTCCGCAATTGGGGGCATTCAACCCTG
CTAGATATTTTATTGACGAGGTCGTCCATGGTACTGATGAGACTGATCTTCATCACTTCTGGGTCAAGGTTACCGCGACCAAAAACCCAGAGGAGCGGAACACCAGGCTTGAGAATCTTTGCTGGAGAATATGGCACATCAGCCGCAGGAAGAAAAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAGTTGCGCGTG
GAACGCGAGCGAGGCCGGAGGGACGTGACAGAAGATTTGTCGGAGGATTTGTCCGAAGGTGAGAGGTTTGGAGGAGATGGTCAAGGGTTGAAGTTATCAGAAAGCCATTTCAATCTCGAGCTGCTAGCTGAGCAACCGCATATAGAGAGACGACTTTACGTTATATTGATCAGTTTGCATGGCCTAGTGCGAGGGGAGAA
TATGGAACTTGGCCGTGATTCCGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAGAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACACGTCAGATCTGTTCTCCTGAAGTGGATTCTAGCTATGGAGAGCCAACTGAAATGTTAACTTCTGATCATGATGAAGAAATTCATGAGAGTG
GAGGGGCATACATAGTTCGAATCCCTTGTGGATGCAAAGAAAAGTATATTGAGAAAGAATTATTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCATTGGGTCATATTCTCAACATTTCCAAAGCGTTGGGAGATCTGATTGGAGAAGGCAGATCTGTATGGCCTCATGTGATCCATGGCCACTATGCAGATGCAGGG
GATGCTGCTTGCCTTCTTTCTGGTGCTCTCAATGTTCCAATGGTTTTGACAGGTCATTCTCTAGGCCGAAATAAACTAGAACAGTTACTGAAACAAGGATTGCATTCCAAGGAGGTTATCAATGCAACCTACAAGATCATGCGTAGGATTGAAGCTGAAGAATTGTGCATTGATTCCGCTGAGCTTGTGGTCACAAGTAC
AAGGCAAGAAATTGAAGAACAATGGGGCCTGTATGATGGCTTTGATTTGGAACTGAATAAAAAACTCAGACATCGTGCCAAGCGTGGTGTCAATTGCTATGGTCGTTATATGCCTCGAATGACGGTTATACCTCCTGGAATGGACTTCAGCAATGTTATAGTGCAAGATGAGAACACAGATAATGATTCAGATAATGATT
CTACTCAATTGCCTGAGTCTCCTTTATGGGGTGAGATCCCACGGTTTTTGAACAATCCTTCAAAACCCATTATTTTGGCTCTCGCTCGACCTGATCCCAAGAAGAACATGGCCACTCTAGTCAAGGCTTTTGGTGAATGTGCCAAGTTGAGGAAGCTGGCGAACTTGATGTTGATCATGGGAAATCGAGATGATATTGAT
CAAATGCCGGTAGCAAGTGCCAATGTGCTGACCACTGTCCTGAAGCTTATTGATAAGTATGATCTCTATGGAGAAGTGGCATATCCCAAACATCACAAGCAATCAGAAGTTGCTGATATATATAGGATTGCTGCAAAAACCAAGGGAGTTTTCATCAATCCAGCTTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGC
AGCTGCACATGGATTGCCTATGGTTGCCACAAAGAATGGAGGACCTGTAGACATTAAACAGACGTTGAAGAATGGTTTGCTGGTAGATCCCCATAACGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGCCGATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGAAGAACATTCATCTCTATTCTTGGC
CACAGCATTGCAAAATATATTTGTCAAGGATTTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGCAAATGACCAAAATGAAAATGTGGATTCTGAATCAGACACTGGTTCATTCAAGGATGCCCCAGATACATCCCTTAGACTCTCATTAGATGCAGATAAACCTTCGCGCTCTAATTCACTTAATAGCACTATT
GAACTTGATAAGCTTCTTCAAAATGAAGATAATGGGGAGGGTATTTCTGAACACATTAGGATGATCATAGAGAAGACTAAGAACAGTCAATCTAAACTTAGAGAAGCAAATGATGTGAATTCACAGGACAAACAAAGTATAGATCGAAATAATAGCTTTAATTCTATGGGGAAACTACCTCTCAGGAGAAGAAAGCGTCT
ATTTGTGATTGCAATGGATTGCTATGATGCTATTGGAGAACCCCTTGTTAGTAAACTAGCTGTTATTATCCAAGAGATTATGAATGCAGTTCGCTCTTTTGGCAACTTTCCATCTCCTGGATTCATCTTATCAACTGCATTAACAGTTTCAGAAACACTTTCTGTGCTTCAGTCTATTGGAGTAAAATTGTCTGCATTTG
ATGCTCTAATTTGCAGCAGTGGGAGCCAACTGCTGTATACAGCTGGTGATAGTCTAGATTCACCTATATATCCAGATCCAGATTATGATTCTCATATCGATTATCGCTGGGGTGCAGAGGGGCTGAGAAAAAGCATGAGAAAACTGAGAGGTCCAGAGAATTCTCGATTCCTAGTGGAAGATGCCGAAGCATCTAACTCC
CATTGCTTGGCCTATAAAGTCAAGAATATATCCACTGCACCCAAAGCAGATGAGCTGAGGCGGCAATTGAGAATGAGAGGTTTGAGATGCCATGTGCTTTACTCTCAAAATTGTTCCCGGCTGCGTGTGCTGCCTCTTCATGCTTCAAGATCTCAAGCTTTAAGGTACCTGTATGTTCGATGGGGCTTGGATATAGCCAA
TATGTACGTGTTTCTGGGGGAAAAAGGAGATACAGACTATGAAGAGATGATTGGAGGAATGCATAAGACACTGATATTGAGAGGGATCGTTTATGATGGAAGTGAAAAGATGGGGAGGAGTCCTACCAGCTATGGAAGAGAAGATGTTTTTCCTTCACAAAGTCCAAATATAGTGCCAGTTACTGTAAGTGATGATAAAG
AAGAATTCAGCAGCCAAGAGATGATTGCAGCTCTGAAAACATTGTCTTGAGAGAAATAATTCTTCATCCCATTGTATGTAACCCGATGCCTTTTTACTAAAATAAAAGTTCCTAGTAAATTTTAGGAAGATGAAAACTACTCGTAATATCTCAGAAAATTTGTAAAAAACCAATCAGGTTATCAAGTATTGAATTTTGAT
GGAAGCCATCATATCCATGAAAGAGCTACTAGGCAATATAATGGTGTTGGACGTCCTTCAGAGGTATCAGAAGGGTTTTTGTATTTGATTATAAGCACATATCGGTGGTGATTGTAGCTATATAGTATCAATGCCTCACGAGTGTAAAATTTGAGAATTTCACACAAATTCTCACTCACTTTTCTACAGTTTACTTGTGT
ATGTAAAGCTTGGAATAAGTGTTCCACTACATGAATCAGTTTTTTTACTGGGCATGTTTGAAAAAGATGGAGCTGAATTTAGCAGGACAAAATTTGTCAGAACTCAGTCCATTCCGTCATACTGTTCATAATAATTAGAATGGTGGTATATGTTATTTATATGACGTGCATTATGATTACAATCCATATTACGATGTTCA
TAATGATTAGAATGGTGGCATATGTTATTTATACGACGC
>TRINITY_DN43364_c3_g1_i2 from sample A9 / Example unspliced isoform:CGCAGGAATAGGCCAAAGCCACGCAGAAATATTTTCCAACCCGGGAACAGGGTTGGGATCTTCTACTGGATTTTGTCCCTATGTGTTAGAGGTGTATTATGGGCTTTTGAAATAGGCTTCCGCATGTCTGCCCTTCTGTTTTTGCGGAAACCACTTCATTGAGACCATCCACGGCTTTCTCCCGAGTTATATACCCAAAT
AAAAACTCTCAGGCAAGCATTACCTCTGCCTTGCCTTTGATTGTTGGGAATGGCGGCCAACGAGTGGATGAACGGGTACTTGGAGGCCATTCTCGATGGAGGAGGAGCCAATGATGATGATGATTACAGTAATCATAAGAAGGACTCTTCAGACAAGCACGGGGTCACTGTTATTCCGCAATTGGGGGCATTCAACCCTG
CTAGATATTTTATTGACGAGGTCGTCCATGGTACTGATGAGACTGATCTTCATCACTTCTGGGTCAAGGTTACCGCGACCAAAAACCCAGAGGAGCGGAACACCAGGCTTGAGAATCTTTGCTGGAGAATATGGCACATCAGCCGCAGGAAGAAAAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAGTTGCGCGTG
GAACGCGAGCGAGGCCGGAGGGACGTGACAGAAGATTTGTCGGAGGATTTGTCCGAAGGTGAGAGGTTTGGAGGAGATGGTCAAGGGTTGAAGTTATCAGAAAGCCATTTCAATCTCGAGCTGCTAGCTGAGCAACCGCATATAGAGAGACGACTTTACGTTATATTGATCAGTTTGCATGGCCTAGTGCGAGGGGAGAA
TATGGAACTTGGCCGTGATTCCGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAGAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACACGTCAGATCTGTTCTCCTGAAGTGGATTCTAGCTATGGAGAGCCAACTGAAATGTTAACTTCTGATCATGATGAAGAAATTCATGAGAGTG
GAGGGGCATACATAGTTCGAATCCCTTGTGGATGCAAAGAAAAGTATATTGAGAAAGAATTATTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCATTGGGTCATATTCTCAACATTTCCAAAGCGTTGGGAGATCTGATTGGAGAAGGCAGATCTGTATGGCCTCATGTGATCCATGGCCACTATGCAGATGCAGGG
GATGCTGCTTGCCTTCTTTCTGGTGCTCTCAATGTTCCAATGGTTTTGACAGGTCATTCTCTAGGCCGAAATAAACTAGAACAGTTACTGAAACAAGGATTGCATTCCAAGGAGGTTATCAATGCAACCTACAAGATCATGCGTAGGATTGAAGCTGAAGAATTGTGCATTGATTCCGCTGAGCTTGTGGTCACAAGTAC
AAGGCAAGAAATTGAAGAACAATGGGGCCTGTATGATGGCTTTGATTTGGAACTGAATAAAAAACTCAGACATCGTGCCAAGCGTGGTGTCAATTGCTATGGTCGTTATATGCCTCGAATGACGGTTATACCTCCTGGAATGGACTTCAGCAATGTTATAGTGCAAGATGAGAACACAGATAATGATTCAGATAATGATT
CTACTCAATTGCCTGAGTCTCCTTTATGGGGTGAGATCCCACGGTTTTTGAACAATCCTTCAAAACCCATTATTTTGGCTCTCGCTCGACCTGATCCCAAGAAGAACATGGCCACTCTAGTCAAGGCTTTTGGTGAATGTGCCAAGTTGAGGAAGCTGGCGAACTTGATGTTGATCATGGGAAATCGAGATGATATTGAT
CAAATGCCGGTAGCAAGTGCCAATGTGCTGACCACTGTCCTGAAGCTTATTGATAAGTATGATCTCTATGGAGAAGTGGCATATCCCAAACATCACAAGCAATCAGAAGTTGCTGATATATATAGGATTGCTGCAAAAACCAAGGGAGTTTTCATCAATCCAGCTTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGC
AGCTGCACATGGATTGCCTATGGTTGCCACAAAGAATGGAGGACCTGTAGACATTAAACAGACGTTGAAGAATGGTTTGCTGGTAGATCCCCATAACGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGCCGATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGAAGAACATTCATCTCTATTCTTGGC
CACAGCATTGCAAAATATATTTGTCAAGGATTTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGCAAATGACCAAAATGAAAATGTGGATTCTGAATCAGACACTGGTTCATTCAAGGATGCCCCAGATACATCCCTTAGACTCTCATTAGATGCAGATAAACCTTCGCGCTCTAATTCACTTAATAGCACTATT
GAACTTGATAAGCTTCTTCAAAATGAAGATAATGGGGAGGGTATTTCTGAACACATTAGGATGATCATAGAGAAGACTAAGAACAGTCAATCTAAACTTAGAGAAGCAAATGATGTGAATTCACAGGACAAACAAAGTATAGATCGAAATAATAGCTTTAATTCTATGGGGAAACTACCTCTCAGGAGAAGAAAGCGTCT
ATTTGTGATTGCAATGGATTGCTATGATGCTATTGGAGAACCCCTTGTTAGTAAACTAGCTGTTATTATCCAAGAGATTATGAATGCAGTTCGCTCTTTTGGCAACTTTCCATCTCCTGGATTCATCTTATCAACTGCATTAACAGTTTCAGAAACACTTTCTGTGCTTCAGTCTATTGGAGTAAAATTGTCTGCATTTG
ATGCTCTAATTTGCAGCAGTGGGAGCCAACTGCTGTATACAGCTGGTGATAGTCTAGATTCACCTATATATCCAGATCCAGATTATGATTCTCATATCGATTATCGCTGGGGTGCAGAGGGGCTGAGAAAAAGCATGAGAAAACTGAGAGGTCCAGAGAATTCTCGATTCCTAGTGGAAGATGCCGAAGCATCTAACTCC
CATTGCTTGGCCTATAAAGTCAAGAATATATCCACTgtaagtttcaattctagatgtcattttcagtgattggtatatgttctatgtcactactggagtggtagtcagcctcctgaaaatctagaaaaacattgtttgttgattaaggcacctgtttactagctccaattgcatgacattaaaattgcgttgctaacaat
tttttagaaaggagtacaagagctaactttatttgttccagatggagtacaagagctaactttatttgttccagatgttagggagccatgacaattctatattagtagaatagaatcaggattcaggactatcattgaatattggctagtagtatcatctttataagattttacttgggtactgttttgccagGCACCCA
AAGCAGATGAGCTGAGGCGGCAATTGAGAATGAGAGGTTTGAGATGCCATGTGCTTTACTCTCAAAATTGTTCCCGGCTGCGTGTGCTGCCTCTTCATGCTTCAAGATCTCAAGCTTTAAGGTGATAAAATTCAAGATTGTTCTTTGCCTCTGAATTTAATTGGATGGATTTGGTCTTTGGCGAGTGCATGTTAAGCACT
TCTGGCTCAAACGGAGCCCATGCAATAAATTCTTGTTGAGCGAGATCTGTATTACTAAAAATTAGATTTGGTGATTTGCAGGTACCTGTATGTTCGATGGGGCTTGGATATAGCCAATATGTACGTGTTTCTGGGGGAAAAAGGAGATACAGACTATGAAGAGATGATTGGAGGAATGCATAAGACACTGATATTGAGAG
GGATCGTTTATGATGGAAGTGAAAAGATGGGGAGGAGTCCTACCAGCTATGGAAGAGAAGATGTTTTTCCTTCACAAAGTCCAAATATAGTGCCAGTTACTGTAAGTGATGATAAAGAAGAATTCAGCAGCCAAGAGATGATTGCAGCTCTGAAAACATTGTCTTGAGAGAAATAATTCTTCATCCCATTGTATGTAACC
CGATGCCTTTTTACTAAAATAAAAGTTCCTAGTAAATTTTAGGAAGATGAAAACTACTCGTAATATCTCAGAAAATTTGTAAAAAACCAATCAGGTTATCAAGTATTGAATTTTGATGGAAGCCATCATATCCATGAAAGAGCTACTAGGCAATATAATGGTGTTGGACGTCCTTCAGAGGTATCAGAAGGGTTTTTGTA
TTTGATTATAAGCACATATCGGTGGTGATTGTAGCTATATAGTATCAATGCCTCACGAGTGTAAAATTTGAGAATTTCACACAAATTCTCACTCACTTTTCTACAGTTTACTTGTGTATGTAAAGCTTGGAATAAGTGTTCCACTACATGAATCAGTTTTTTTACTGGGCATGTTTGAAAAAGATGGAGCTGAATTTAGC
AGGACAAAATTTGTCAGAACTCAGTCCATTCCGTCATACTGTTCATAATAATTAGAATGGTGGTATATGTTATTTATATGACGTGCATTATGATTACAATCCATATTACGATGTTCATAATGATTAGAATGGTGGCATATGTTATTTATACGACGC
Intron 3 GTGATAAAAT ... TGATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.31 | 24 | 8 | 5 |
| A2 | 20 | 22 | 10 | 1 |
| A3 | 27.82 | 35 | 12 | 15 |
| A4 | 25 | 24 | 8 | 8 |
| A5 | 22.65 | 35 | 3.5 | 17 |
| A6 | 18.03 | 25 | 5 | 6 |
| A7 | 19.4 | 54 | 8 | 18 |
| A8 | 19.72 | 57 | 10 | 18 |
| A9 | 16.11 | 56 | 8.5 | 13 |
| A10 | 14.73 | 55 | 8 | 11 |
>TRINITY_DN43962_c2_g1_i1 from sample A8 / Example spliced isoformCATCAGCCGCAGGAAGAAAAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAGTTGCGCGTGGAACGCGAGCGAGGCCGGAGGGACGTGACAGAAGATTTGTCGGAGGATTTGTCCGAAGGTGAGAGGTTTGGAGGAGATGGTCAAGGGTTGAAGTTATCAGAAAGCCATTTCAATCTCGAGCTGCTAGCTGAGCAAC
CGCATATAGAGAGACGACTTTACGTTATATTGATCAGTTTGCATGGCCTAGTGCGAGGGGAGAATATGGAACTTGGCCGTGATTCCGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAGAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACACGTCAGATCTGTTCTCCTGAAGTGGAT
TCTAGCTATGGAGAGCCAACTGAAATGTTAACTTCTGATCATGATGAAGAAATTCATGAGAGTGGAGGGGCATACATAGTTCGAATCCCTTGTGGATGCAAAGAAAAGTATATTGAGAAAGAATTATTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCATTGGGTCATATTCTCAACATTTCCAAAGCGTTGGGAGA
TCTGATTGGAGAAGGCAGATCTGTATGGCCTCATGTGATCCATGGCCACTATGCAGATGCAGGGGATGCTGCTTGCCTTCTTTCTGGTGCTCTCAATGTTCCAATGGTTTTGACAGGTCATTCTCTAGGCCGAAATAAACTAGAACAGTTACTGAAACAAGGATTGCATTCCAAGGAGGTTATCAATGCAACCTACAAGA
TCATGCGTAGGATTGAAGCTGAAGAATTGTGCATTGATTCCGCTGAGCTTGTGGTCACAAGTACAAGGCAAGAAATTGAAGAACAATGGGGCCTGTATGATGGCTTTGATTTGGAACTGAATAAAAAACTCAGACATCGTGCCAAGCGTGGTGTCAATTGCTATGGTCGTTATATGCCTCGAATGACGGTTATACCTCCT
GGAATGGACTTCAGCAATGTTATAGTGCAAGATGAGAACACAGATAATGATTCAGATAATGATTCTACTCAATTGCCTGAGTCTCCTTTATGGGGTGAGATCCCACGGTTTTTGAACAATCCTTCAAAACCCATTATTTTGGCTCTCGCTCGACCTGATCCCAAGAAGAACATGGCCACTCTAGTCAAGGCTTTTGGTGA
ATGTGCCAAGTTGAGGAAGCTGGCGAACTTGATGTTGATCATGGGAAATCGAGATGATATTGATCAAATGCCGGTAGCAAGTGCCAATGTGCTGACCACTGTCCTGAAGCTTATTGATAAGTATGATCTCTATGGAGAAGTGGCATATCCCAAACATCACAAGCAATCAGAAGTTGCTGATATATATAGGATTGCTGCAA
AAACCAAGGGAGTTTTCATCAATCCAGCTTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGCAGCTGCACATGGATTGCCTATGGTTGCCACAAAGAATGGAGGACCTGTAGACATTAAACAGACGTTGAAGAATGGTTTGCTGGTAGATCCCCATAACGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGCC
GATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGAAGAACATTCATCTCTATTCTTGGCCACAGCATTGCAAAATATATTTGTCAAGGATTTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGCAAATGACCAAAATGAAAATGTGGATTCTGAATCAGACACTGGTTCATTCAAGGATGCCCCAGATAC
ATCCCTTAGACTCTCATTAGATGCAGATAAACCTTCGCGCTCTAATTCACTTAATAGCACTATTGAACTTGATAAGCTTCTTCAAAATGAAGATAATGGGGAGGGTATTTCTGAACACATTAGGATGATCATAGAGAAGACTAAGAACAGTCAATCTAAACTTAGAGAAGCAAATGATGTGAATTCACAGGACAAACAAA
GTATAGATCGAAATAATAGCTTTAATTCTATGGGGAAACTACCTCTCAGGAGAAGAAAGCGTCTATTTGTGATTGCAATGGATTGCTATGATGCTATTGGAGAACCCCTTGTTAGTAAACTAGCTGTTATTATCCAAGAGATTATGAATGCAGTTCGCTCTTTTGGCAACTTTCCATCTCCTGGATTCATCTTATCAACT
GCATTAACAGTTTCAGAAACACTTTCTGTGCTTCAGTCTATTGGAGTAAAATTGTCTGCATTTGATGCTCTAATTTGCAGCAGTGGGAGCCAACTGCTGTATACAGCTGGTGATAGTCTAGATTCACCTATATATCCAGATCCAGATTATGATTCTCATATCGATTATCGCTGGGGTGCAGAGGGGCTGAGAAAAAGCAT
GAGAAAACTGAGAGGTCCAGAGAATTCTCGATTCCTAGTGGAAGATGCCGAAGCATCTAACTCCCATTGCTTGGCCTATAAAGTCAAGAATATATCCACTGCACCCAAAGCAGATGAGCTGAGGCGGCAATTGAGAATGAGAGGTTTGAGATGCCACGTGCTTTACTCTCAAAATTGTTCCCGGCTGCGTGTGCTGCCTC
TTCATGCTTCAAGATCTCAAGCTTTAAGGTACCTGTATGTTCGATGGGGCTTGGATATAGCCAATATGTACGTGTTTCTGGGGGAAAAAGGAGATACAGACTATGAAGAGATGATTGGAGGAATGCATAAGACACTGATATTGAGAGGGATCGTTTATGATGGAAGTGAAAAGATGGGGAGGAGTCCTACCAGCTATGGA
AGAGAAGATGTTTTTCCTTCACAAAGTCCAAATATAGTGCCAGTTACTGTAAGTGATGATAAAGAAGAATTCAGCAGCCAAGAGATGATTGCAGCTCTGAAAACATTGTCTTGAGAGAAATAATTCTTCATCCCATTGTATGTAACCCGATGCCTTTTTACTAAAATAAAAGTTCCTAGTAAATTTTAGGAAGATGAAAA
CTACTCGTAATATCTCAGAAAATTTGTAAAAAACCAATCAGGTTATCAAGTATTGAATTTTGATGGAAGCCATCATATCCATGAAAGAGCTACTAGGCAATATAATGGTGTTGGACGTCCTTCAGAGGTATCAGAAGGGTTTTTGTATTTGATTATAAGCACATATCGGTGGTGATTGTAGCTATATAGTATCAATGCCT
CACGAGTGTAAAATTTGAGAATTTCACACAAATTCTCACTCACTTTTCTACAGTTTACTTGTGTATGTAAAGCTTGGAATAAGTGTTCCACTACATGAATCAGTTTTTTTACTGGGCATGTTTGAAAAAGATGGAGCTGAATTTAGCAGGACAAAATTTGTCAGAACTCAGTCCATTCCGTCATACTGTTCATAATAATT
AGAATGGTGGTATATGTTATTTATATGACGTGCATTATGATTACAATCCATATTACGAT
>TRINITY_DN43962_c2_g1_i2 from sample A8 / Example unspliced isoform:CATCAGCCGCAGGAAGAAAAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAGTTGCGCGTGGAACGCGAGCGAGGCCGGAGGGACGTGACAGAAGATTTGTCGGAGGATTTGTCCGAAGGTGAGAGGTTTGGAGGAGATGGTCAAGGGTTGAAGTTATCAGAAAGCCATTTCAATCTCGAGCTGCTAGCTGAGCAAC
CGCATATAGAGAGACGACTTTACGTTATATTGATCAGTTTGCATGGCCTAGTGCGAGGGGAGAATATGGAACTTGGCCGTGATTCCGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAGAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACACGTCAGATCTGTTCTCCTGAAGTGGAT
TCTAGCTATGGAGAGCCAACTGAAATGTTAACTTCTGATCATGATGAAGAAATTCATGAGAGTGGAGGGGCATACATAGTTCGAATCCCTTGTGGATGCAAAGAAAAGTATATTGAGAAAGAATTATTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCATTGGGTCATATTCTCAACATTTCCAAAGCGTTGGGAGA
TCTGATTGGAGAAGGCAGATCTGTATGGCCTCATGTGATCCATGGCCACTATGCAGATGCAGGGGATGCTGCTTGCCTTCTTTCTGGTGCTCTCAATGTTCCAATGGTTTTGACAGGTCATTCTCTAGGCCGAAATAAACTAGAACAGTTACTGAAACAAGGATTGCATTCCAAGGAGGTTATCAATGCAACCTACAAGA
TCATGCGTAGGATTGAAGCTGAAGAATTGTGCATTGATTCCGCTGAGCTTGTGGTCACAAGTACAAGGCAAGAAATTGAAGAACAATGGGGCCTGTATGATGGCTTTGATTTGGAACTGAATAAAAAACTCAGACATCGTGCCAAGCGTGGTGTCAATTGCTATGGTCGTTATATGCCTCGAATGACGGTTATACCTCCT
GGAATGGACTTCAGCAATGTTATAGTGCAAGATGAGAACACAGATAATGATTCAGATAATGATTCTACTCAATTGCCTGAGTCTCCTTTATGGGGTGAGATCCCACGGTTTTTGAACAATCCTTCAAAACCCATTATTTTGGCTCTCGCTCGACCTGATCCCAAGAAGAACATGGCCACTCTAGTCAAGGCTTTTGGTGA
ATGTGCCAAGTTGAGGAAGCTGGCGAACTTGATGTTGATCATGGGAAATCGAGATGATATTGATCAAATGCCGGTAGCAAGTGCCAATGTGCTGACCACTGTCCTGAAGCTTATTGATAAGTATGATCTCTATGGAGAAGTGGCATATCCCAAACATCACAAGCAATCAGAAGTTGCTGATATATATAGGATTGCTGCAA
AAACCAAGGGAGTTTTCATCAATCCAGCTTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGCAGCTGCACATGGATTGCCTATGGTTGCCACAAAGAATGGAGGACCTGTAGACATTAAACAGACGTTGAAGAATGGTTTGCTGGTAGATCCCCATAACGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGCC
GATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGAAGAACATTCATCTCTATTCTTGGCCACAGCATTGCAAAATATATTTGTCAAGGATTTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGCAAATGACCAAAATGAAAATGTGGATTCTGAATCAGACACTGGTTCATTCAAGGATGCCCCAGATAC
ATCCCTTAGACTCTCATTAGATGCAGATAAACCTTCGCGCTCTAATTCACTTAATAGCACTATTGAACTTGATAAGCTTCTTCAAAATGAAGATAATGGGGAGGGTATTTCTGAACACATTAGGATGATCATAGAGAAGACTAAGAACAGTCAATCTAAACTTAGAGAAGCAAATGATGTGAATTCACAGGACAAACAAA
GTATAGATCGAAATAATAGCTTTAATTCTATGGGGAAACTACCTCTCAGGAGAAGAAAGCGTCTATTTGTGATTGCAATGGATTGCTATGATGCTATTGGAGAACCCCTTGTTAGTAAACTAGCTGTTATTATCCAAGAGATTATGAATGCAGTTCGCTCTTTTGGCAACTTTCCATCTCCTGGATTCATCTTATCAACT
GCATTAACAGTTTCAGAAACACTTTCTGTGCTTCAGTCTATTGGAGTAAAATTGTCTGCATTTGATGCTCTAATTTGCAGCAGTGGGAGCCAACTGCTGTATACAGCTGGTGATAGTCTAGATTCACCTATATATCCAGATCCAGATTATGATTCTCATATCGATTATCGCTGGGGTGCAGAGGGGCTGAGAAAAAGCAT
GAGAAAACTGAGAGGTCCAGAGAATTCTCGATTCCTAGTGGAAGATGCCGAAGCATCTAACTCCCATTGCTTGGCCTATAAAGTCAAGAATATATCCACTGCACCCAAAGCAGATGAGCTGAGGCGGCAATTGAGAATGAGAGGTTTGAGATGCCACGTGCTTTACTCTCAAAATTGTTCCCGGCTGCGTGTGCTGCCTC
TTCATGCTTCAAGATCTCAAGCTTTAAGgtgataaaattcaagattgttctttgcctctgaatttaattggatggatttggtctttggcgagtgcatgttaagcacttctggctcaaacggagcccatgcaataaattcttgttgagcgagatctgtattactaaaaattagatttggtgatttgcagGTACCTGTATGT
TCGATGGGGCTTGGATATAGCCAATATGTACGTGTTTCTGGGGGAAAAAGGAGATACAGACTATGAAGAGATGATTGGAGGAATGCATAAGACACTGATATTGAGAGGGATCGTTTATGATGGAAGTGAAAAGATGGGGAGGAGTCCTACCAGCTATGGAAGAGAAGATGTTTTTCCTTCACAAAGTCCAAATATAGTGC
CAGTTACTGTAAGTGATGATAAAGAAGAATTCAGCAGCCAAGAGATGATTGCAGCTCTGAAAACATTGTCTTGAGAGAAATAATTCTTCATCCCATTGTATGTAACCCGATGCCTTTTTACTAAAATAAAAGTTCCTAGTAAATTTTAGGAAGATGAAAACTACTCGTAATATCTCAGAAAATTTGTAAAAAACCAATCA
GGTTATCAAGTATTGAATTTTGATGGAAGCCATCATATCCATGAAAGAGCTACTAGGCAATATAATGGTGTTGGACGTCCTTCAGAGGTATCAGAAGGGTTTTTGTATTTGATTATAAGCACATATCGGTGGTGATTGTAGCTATATAGTATCAATGCCTCACGAGTGTAAAATTTGAGAATTTCACACAAATTCTCACT
CACTTTTCTACAGTTTACTTGTGTATGTAAAGCTTGGAATAAGTGTTCCACTACATGAATCAGTTTTTTTACTGGGCATGTTTGAAAAAGATGGAGCTGAATTTAGCAGGACAAAATTTGTCAGAACTCAGTCCATTCCGTCATACTGTTCATAATAATTAGAATGGTGGTATATGTTATTTATATGACGTGCATTATGA
TTACAATCCATATTACGAT
Intron 4 GTAAGCGGCA ... TGTGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.21 | 46 | 7 | 0 |
| A2 | 27.78 | 39 | 15 | 1 |
| A3 | 23.26 | 33 | 10 | 0 |
| A4 | 13.79 | 25 | 4 | 2 |
| A5 | 4.76 | 20 | 1 | 0 |
| A6 | 30.77 | 9 | 4 | 0 |
| A7 | 6.67 | 14 | 1 | 0 |
| A8 | 0 | 4 | 0 | 0 |
| A9 | 21.74 | 18 | 5 | 0 |
| A10 | 8.33 | 11 | 1 | 0 |
>TRINITY_DN104919_c0_g2_i2 from sample A4 / Example spliced isoformGGAATAGGCCAAAGCCACGCAGAAATATTTTCCAACCCGGGAACAGGGTTGGGATCTTCTACTGGATTTTGTCCCTATGTGTTAGAGGTGTATTATGGGCTTTTGAAATAGGCTTCCGCATGTCTGCCCTTCTGTTTTTGCGGAAACCACTTCATTGAGACCATCCACGGCTCTCTCCCGAGTTATATACCCAAATAAAA
ACTCTCAGGCAAGCATTACCTCTGCCTTGCCTTTGATTGTTGGGAATGGCGGCCAACGAGTGGATGAACGGGTACTTGGAGGCCATTCTCGATGGAGGAGGAGCCAATGATGATGATGATTACAGTAATCATAAGAAGGACTCTTCAGACAAGCACGGGGTCACTGTTATTCCGCAATTGGGGGCATTCAACCCTGCTAG
ATATTTTATTGACGAGGTCGTCCATGGTACTGATGAGACTGATCTTCATCACTTCTGGGTCAAGGTTACCGCGACCAAAAACCCAGAGGAGCGGAACACCAGGCTTGAGAATCTTTGCTGGAGAATATGGCACATCAGCCGCAGGAAGAAAAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAGTTGCGCGTGGAAC
GCGAGCGAGGCCGGAGGGACGTGACAGAAGATTTGTCGGAGGATTTGTCCGAAGGTGAGAGGTTTGGAGGAGATGGTCAAGGGTTGAAGTTATCAGAAAGCCATTTCAATCTCGAGCTGCTAGCTGAGCAACCGCATATAGAGAGACGACTTTACGTTATATTGATCAGTTTGCATGGCCTAGTGCGAGGGGAGAATATG
GAACTTGGCCGTGATTCCGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAGAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACACGTCAGATCTGTTCTCCTGAAGTGGATTCTAGCTATGGAGAGCCAACTGAAATGTTAACTTCTGATCATGATGAAGAAATTCATGAGAGTGGAGG
GGCATACATAGTTCGAATCCCTTGTGGATGCAAAGAAAAGTATATTGAGAAAGAATTATTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCATTGGGTCATATTCTCAACATTTCCAAAGCGTTGGGAGATCTGATTGGAGAAGGCAGATCTGTATGGCCTCATGTGATCCATGGCCACTATGCAGATGCAGGGGATG
CTGCTTGCCTTCTTTCTGGTGCTCTCAATGTTCCAATGGTTTTGACAGGTCATTCTCTAGGCCGAAATAAACTAGAACAGTTACTGAAACAAGGATTGCATTCCAAGGAGGTTATCAATGCAACCTACAAGATCATGCGTAGGATTGAAGCTGAAGAATTGTGCATTGATTCCGCTGAGCTTGTGGTCACAAGTACAAGG
CAAGAAATTGAAGAACAATGGGGCCTGTATGATGGCTTTGATTTGGAACTGAATAAAAAACTCAGACATCGTGCCAAGCGTGGTGTCAATTGCTATGGTCGTTATATGCCTCGAATGACGGTTATACCTCCTGGAATGGACTTCAGCAATGTTATAGTGCAAGATGAGAACACAGATAATGATTCAGATAATGATTCTAC
TCAATTGCCTGAGTCTCCTTTATGGGGTGAGATCCCACGGTTTTTGAACAATCCTTCAAAACCCATTATTTTGGCTCTCGCTCGACCTGATCCCAAGAAGAACATGGCCACTCTAGTCAAGGCTTTTGGTGAATGTGCCAAGTTGAGGAAGCTGGCGAACTTGATGTTGATCATGGGAAATCGAGATGATATTGATCAAA
TGCCGGTAGCAAGTGCCAATGTGCTGACCACTGTCCTGAAGCTTATTGATAAGTATGATCTCTATGGAGAAGTGGCATATCCCAAACATCACAAGCAATCAGAAGTTGCTGATATATATAGGATTGCTGCAAAAACCAAGGGAGTTTTCATCAATCCAGCTTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGCAGCT
GCACATGGATTGCCTATGGTTGCCACAAAGAATGGAGGACCTGTAGACATTAAACAGACGTTGAAGAATGGTTTGCTGGTAGATCCCCATAACGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGCCGATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGAAGAACATTCATCTCTATTCTTGGCCACA
GCATTGCAAAATATATTTGTCAAGGATTTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGCAAATGACCAAAATGAAAATGTGGATTCTGAATCAGACACTGGTTCATTCAAGGATGCCCCAGATACATCCCTTAGACTCTCATTAGATGCAGATAAACCTTCGCGCTCTAATTCACTTAATAGCACTATTGAAC
TTGATAAGCTTCTTCAAAATGAAGATAATGGGGAGGGTATTTCTGAACACATTAGGATGATCATAGAGAAGACTAAGAACAGTCAATCTAAACTTAGAGAAGCAAATGATGTGAATTCACAGGACAAACAAAGTATAGATCGAAATAATAGCTTTAATTCTATGGGGAAACTACCTCTCAGGAGAAGAAAGCGTCTATTT
GTGATTGCAATGGATTGCTATGATGCTATTGGAGAACCCCTTGTTAGTAAACTAGCTGTTATTATCCAAGAGATTATGAATGCAGTTCGCTCTTTTGGCAACTTTCCATCTCCTGGATTCATCTTATCAACTGCATTAACAGTTTCAGAAACACTTTCTGTGCTTCAGTCTATTGGAGTAAAATTGTCTGCATTTGATGC
TCTAATTTGCAGCAGTGGGAGCCAACTGCTGTATACAGCTGGTGATAGTCTAGATTCACCTATATATCCAGATCCAGATTATGATTCTCATATCGATTATCGCTGGGGTGCAGAGGGGCTGAGAAAAAGCATGAGAAAACTGAGAGGTCCAGAGAATTCTCGATTCCTAGTGGAAGATGCCGAAGCATCTAACTCCCATT
GCTTGGCCTATAAAGTCAAGAATATATCCACTGCACCCAAAGCAGATGAGCTGAGGCGGCAATTGAGAATGAGAGGTTTGAGATGCCATGTGCTTTACTCTCAAAATTGTTCCCGGCTGCGTGTGCTGCCTCTTCATGCTTCAAGATCTCAAGCTTTAAGGTACCTGTATGTTCGATGGGGCTTGGATATAGCCAATATG
TACGTGTTTCTGGGGGAAAAAGGAGATACAGACTATGAAGAGATGATTGGAGGAATGCATAAGACACTGATATTGAGAGGGATCGTTTATGATGGAAGTGAAAAGATGGGGAGGAGTCCTACCAGCTATGGAAGAGAAGATGTTTTTCCTTCACAAAGTCCAAATATAGTGCCAGTTACTGTAAGTGATGATAAAGAAGA
ATTCAGCAGCCAAGAGATGATTGCAGCTCTGAAAACATTGTCTTGAGAGAAATAATTCTTCATCCCATTGTATGTAACCCGATGCCTTTTTACTAAAATAAAAGTTCCTAGTAAATTTTAGGAAGATGAAAACTACTCGTAATATCTCAGAAAATTTGTAAAAAACCAATCAGGTTATCAAGTATTGAATTTTGATGGAA
GCCATCATATCCATGAAAGAGCTACTAGGCAATATAATGGTGTTGGACGTCCTTCAGAGGTATCAGAAGGGTTTTTGTATTTGATTATAAGCACATATCGGTGGTGATTGTAGCTATATAGTATCAATGCCTCACGAGTGTAAAATTTGAGAATTTCACACAAATTCTCACTCACTTTTCTACAGTTTACTTGTGTATGT
AAAGCTTGGAATAAGTGTTCCACTACATGAATCAGTTTTTTTACTGGGCATGTTTGAAAAAGATGGAGCTGAATTTAGCAGGACAAAATTTGTCAGAACTCAG
>TRINITY_DN104919_c0_g2_i1 from sample A4 / Example unspliced isoform:GGAATAGGCCAAAGCCACGCAGAAATATTTTCCAACCCGGGAACAGGGTTGGGATCTTCTACTGGATTTTGTCCCTATGTGTTAGAGGTGTATTATGGGCTTTTGAAATAGGCTTCCGCATGTCTGCCCTTCTGTTTTTGCGGAAACCACTTCATTGAGACCATCCACGGCTCTCTCCCGAGTTATATACCCAAATAAAA
ACTCTCAGGCAAGCATTACCTCTGCCTTGCCTTTGATTGTTGGGAATGGCGGCCAACGAGTGGATGAACGGGTACTTGGAGGCCATTCTCGATGGAGGAGGAGCCAATGATGATGATGATTACAGTAATCATAAGAAGGACTCTTCAGACAAGCACGGGGTCACTGTTATTCCGCAATTGGGGGCATTCAACCCTGCTAG
ATATTTTATTGACGAGGTCGTCCATGGTACTGATGAGACTGATCTTCATCACTTCTGGGTCAAGGTTACCGCGACCAAAAACCCAGAGGAGCGGAACACCAGGCTTGAGAATCTTTGCTGGAGAATATGGCACATCAGCCGCAGGAAGAAAAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAGTTGCGCGTGGAAC
GCGAGCGAGGCCGGAGGGACGTGACAGAAGATTTGTCGGAGGATTTGTCCGAAGGTGAGAGGTTTGGAGGAGATGGTCAAGGGTTGAAGTTATCAGAAAGCCATTTCAATCTCGAGCTGCTAGCTGAGCAACCGCATATAGAGAGACGACTTTACGTTATATTGATCAGTTTGCATGGCCTAGTGCGAGGGGAGAATATG
GAACTTGGCCGTGATTCCGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAGAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACACGTCAGATCTGTTCTCCTGAAGTGGATTCTAGCTATGGAGAGCCAACTGAAATGTTAACTTCTGATCATGATGAAGAAATTCATGAGAGTGGAGG
GGCATACATAGTTCGAATCCCTTGTGGATGCAAAGAAAAGTATATTGAGAAAGAATTATTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCATTGGGTCATATTCTCAACATTTCCAAAGCGTTGGGAGATCTGATTGGAGAAGGCAGATCTGTATGGCCTCATGTGATCCATGGCCACTATGCAGATGCAGGGGATG
CTGCTTGCCTTCTTTCTGGTGCTCTCAATGTTCCAATGGTTTTGACAGGTCATTCTCTAGGCCGAAATAAACTAGAACAGTTACTGAAACAAGGATTGCATTCCAAGGAGGTTATCAATGCAACCTACAAGATCATGCGTAGGATTGAAGCTGAAGAATTGTGCATTGATTCCGCTGAGCTTGTGGTCACAAGTACAAGG
CAAGAAATTGAAGAACAATGGGGCCTGTATGATGGCTTTGATTTGGAACTGAATAAAAAACTCAGACATCGTGCCAAGCGTGGTGTCAATTGCTATGGTCGTTATATGCCTCGAATGACGGTTATACCTCCTGGAATGGACTTCAGCAATGTTATAGTGCAAGATGAGAACACAGATAATGATTCAGATAATGATTCTAC
TCAATTGCCTGAGTCTCCTTTATGGGGTGAGgtaagcggcagggcaaggtttaattactctccacaatttaagatttcacgttcttgaaaaattatagtcctcacactgcataatagcattttttgtttgtgttttagATCCCACGGT