sp|Q6QJ72|PDL2_ARATH ----> Pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial

Intron 1 GTCATCATCC ... CATTCAATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.48	27.4	35.4	33
A2	68.49	23	54	46
A3	69.62	24	70	40
A4	67.41	22	59	32
A5	65.85	21	44	37
A6	62.02	328.3	599.1	473
A7	59.83	248.9	436.4	305
A8	61.76	226	383	347
A9	65.22	247.7	517.1	412
A10	65.94	172	398	268

>TRINITY_DN112671_c0_g1_i1 from sample A1 / Example spliced isoform

TGTTGACATAGGAATTTGCTGGAACAGGGGCAATAATTTTTGCTATTGGATTTGTGGTCGCTTAATCAAGTTACTCTTCTGTTTAATTTTTTATTTGTATTTTGAATTTTTTTTGATGGGTTGGTCTGTGCCATGCTAGAGTATTGATACAACGTGGGCGACTTATGCAATCTCTGAGTATTTAATTCTCGTTGGCAACC
TTCTACTCGTTTGATGGAAAAAAACAGCCAGCAATTGTAGCAATATTGGGTCAACAAAATTGTCATTGATGGAGAAAGCGGTGCTGCGATGGTCGGAGGAGAACAAAATGCGAAGATTTCAATAACATGCATACATGTGTATGCTTGTGAAAAGTAATACTCTGTAGTGCAATAAACATACACAGTAATGGATGCATCTA
CACCCTCGTCATCTTCAGAAATGGAGTTAGCAAACAAGAAGTGTGGGCACTGTGATTCAAAGGACATTGGGGCCATGTCTGAACAAACAGCAAATGAACTGCTTCAACAGATCCCAGGCTGGAGTATATTGAATGATGATGGGAAACCAAAGTTGCATAGATCGTGGAAAGCAAAAAGTTTCAAGAAGGGATTGGAACTT
TTTCAGTGTGTATCAGATATTGCTGAAGCAGAAGGTGGTTTATCTGAGAATGACTTCATACTTGCAGCAAAAATAAGTGCTCTTGACCTGGAACCATTCCTACGGAAAAAGGCTGCTGCAAAATAGTTAGCATGAACTTGGCCTTTATATTCTTTAAGCACTGTTGGGATAGCTTCCACGTTGGTACTGTAAAATGTTTA
CAAGTAGTAATGCTTTTACAGTATTATCTTTCTTTAGTTATTAGTGGAATCTGCTTTTCTTTCAATGGCTTTGTACACTTCTCGAGTATTGGAACATACCACGGATGGTCATACAAATGTAATAAGCATGGTAACACCTCTTCTGGTGATGTAGAGTAACATAATTTCTTTTTCATAGTTTATAGTTCAAAACCTTTGAT
GAATACCTTTGCTAATACAGTACAAATTGTTTTTTCTTGATTCAGCTGTCTAGAATTTATAGAAACATAATTCCTTTTCAGACTAGGATAAGTATTTTTGCAGCAATAATCAATTTCTTTCCTTCCTGAGATTGGTCCGAACAATCTGACAGGATATTTCCTTTTCCAATACTCGTGGTTCCCATTGTATCCGATATGAT
CTTTGAAACATTTTCTTTGCTATTGGGCC

>TRINITY_DN112671_c0_g1_i8 from sample A1 / Example unspliced isoform:

TGTTGACATAGGAATTTGCTGGAACAGGGGCAATAATTTTTGCTATTGGATTTGTGGTCGCTTAATCAAGTTACTCTTCTGTTTAATTTTTTATTTGTATTTTGAATTTTTTTTGATGGGTTGGTCTGTGCCATGCTAGAGTATTGATACAACGTGGGCGACTTATGCAATCTCTGAGTATTTAATTCTCGTTGGCAACC
TTCTACTCGTTTGATGGAAAAAAACAGCCAGCAATTGTAGCAATATTGGGTCAACAAAATTGTCATTGATGGAGAAAGCGGTGCTGCGATGGTCGGAGGAGAACAAAATGCGAAGATTTCAATAACATGCATACATGTGTATGCTTGTGAAAAGTAATACTCTGTAGTGCAATAAACATACACAGTAATGGATGCATCTA
CACCCTCGTCATCTTCAGAAATGGAGTTAGCAAACAAGAAGTGTGGGCACTGTGATTCAAAGGACATTGGGGCCATGTCTGAACAAACAGCAAATGAACTGCTTCAACAGATCCCAGGCTGGAGTATATTGAATGATGATGGGAAACCAAAGTTGCATAGATCGTGGAAAGCAAAAAGTTTCAAGAAGGGATTGGAACTT
TTTCAGTGTGTATCAGATATTGCTGAAGCAGAAGgtcatcatcctgatcttcatcttgtcagctggaataatgtcagcctagatatctggacacattcaatagGTGGTTTATCTGAGAATGACTTCATACTTGCAGCAAAAATAAGTGCTCTTGACCTGGAACCATTCCTACGGAAAAAGGCTGCTGCAAAATAGTTAGC
ATGAACTTGGCCTTTATATTCTTTAAGCACTGTTGGGATAGCTTCCACGTTGGTACTGTAAAATGTTTACAAGTAGTAATGCTTTTACAGTATTATCTTTCTTTAGTTATTAGTGGAATCTGCTTTTCTTTCAATGGCTTTGTACACTTCTCGAGTATTGGAACATACCACGGATGGTCATACAAATGTAATAAGCATGG
TAACACCTCTTCTGGTGATGTAGAGTAACATAATTTCTTTTTCATAGTTTATAGTTCAAAACCTTTGATGAATACCTTTGCTAATACAGTACAAATTGTTTTTTCTTGATTCAGCTGTCTAGAATTTATAGAAACATAATTCCTTTTCAGACTAGGATAAGTATTTTTGCAGCAATAATCAATTTCTTTCCTTCCTGAGA
TTGGTCCGAACAATCTGACAGGATATTTCCTTTTCCAATACTCGTGGTTCCCATTGTATCCGATATGATCTTTGAAACATTTTCTTTGCTATTGGGCC

Intron 2 GTCATCATCC ... TGTCCCAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	48.15	28	26	0
A2	64.06	23	41	0
A3	68.83	24	53	0
A4	69.44	22	50	0
A5	57.14	21	28	0
A6	58.17	330	459	1
A7	58.75	250	356	6
A8	55.95	226	287	2
A9	61.18	250	394	2
A10	64.97	172	319	2

>TRINITY_DN35646_c0_g1_i6 from sample A8 / Example spliced isoform

TTACAGAGACTGTTGACATAGGAATTTGCTGGAACAGGGGCAATAATTTTTGCTATTGGATTTGTGGTCGCTTAATCAAGTTACTCTTCTGTTTAATTTTTTATTTGTATTTTGAATTTTTTTTGATGGGTTGGTCTGTGCCATGCTAGAGTATTGATACAACGTGGGCGACTTATGCAATCTCTGAGTATTTAATTCTC
GTTGGCAACCTTCTACTCGTTTGATGGAAAAAAACAGCCAGCAATTGTAGCAATATTGGGTCAACAAAATTGTCATTGATGGAGAAAGCGGTGCTGCGATGGTCGGAGGAGAACAAAATGCGAAGATTTCAATAACATGCATACATGTGTATGCTTGTGAAAAGTAATACTCTGTAGTGCAATAAACATACACAGTAATG
GATGCATCTACACCCTCGTCATCTTCAGTGGCGGTTGTGACTGGGTCAATATCTCTACATCCATCGCCATGATCTCCATGGACTCTATTATGATCCGTTCAACAATTGTCTTTCTTTTCTTGTAGATCGAACCACATGTTTCTTCTTCTTGTTGAATTTGGGTTGGTAAATGGTGGCTGCCTTGTAGGCTTTTTGTACAT
TTGGAAAAGCTCTCCATACTCGAAATTATAAGGGTGGCCAGTTTTGCAAGAGAAATGGAGTTAGCAAACAAGAAGTGTGGGCACTGTGATTCAAAGGACATTGGGGCCATGTCTGAACAAACAGCAAATGAACTGCTTCAACAGATCCCAGGCTGGAGTATATTGAATGATGATGGGAAACCAAAGTTGCATAGATCGTG
GAAAGCAAAAAGTTTCAAGAAGGGATTGGAACTTTTTCAGTGTGTATCAGATATTGCTGAAGCAGAAGGTGGTTTATCTGAGAATGACTTCATACTTGCAGCAAAAATAAGTGCTCTTGACCTGGAACCATTCCTACGGAAAAAGGCTGCTGCAAAATAGTTAGCATGAACTTGGCCTTTATATTCTTTAAGCACTGTTG
GGATAGCTTCCACGTTGGTACTGTAAAATGTTTACAAGTAGTAATGCTTTTACAGTATTATCTTTCTTTAGTTATTAGTGGAATCTGCTTTTCTTTCAATGGCTTTGTACACTTCTCGAGTATTGGAACATACCACGGATGGTCATACAAATGTAATAAGCATGGTAACACCTCTTCTGGTGATGTAGAGTAACATAATT
TCTTTTTCATAGTTTATAGTTCAAAACCTTTGATGAATACCTTTGCTAATACAGTACAAATTGTTTTTTCTTGATTCAGCTGTCTAGAATTTATAGAAACATAATTCCTTTTCAGACTAGGATAAGTATTTTTGCAGCAATAATCAATTTCTTTCCTTCCTGAGATTGGTCCGAACAATCTGACAGGATATTTCCTTTTC
CAATACTCGTGGTTCCCATTGTATCCGATATGATCTTTGAAACATTTTCTTTGCTATTGGGCCAGAAATATGATGGCGAACTAGTCTCAAACACTCTATTTGCATTATGTAGGTGAAGCTAGTGAGCAAAGATTTTCATTTCTAAACTTTATCACAAAGTAATCTCTCTAAACTGG

>TRINITY_DN35646_c0_g1_i5 from sample A8 / Example unspliced isoform:

TTACAGAGACTGTTGACATAGGAATTTGCTGGAACAGGGGCAATAATTTTTGCTATTGGATTTGTGGTCGCTTAATCAAGTTACTCTTCTGTTTAATTTTTTATTTGTATTTTGAATTTTTTTTGATGGGTTGGTCTGTGCCATGCTAGAGTATTGATACAACGTGGGCGACTTATGCAATCTCTGAGTATTTAATTCTC
GTTGGCAACCTTCTACTCGTTTGATGGAAAAAAACAGCCAGCAATTGTAGCAATATTGGGTCAACAAAATTGTCATTGATGGAGAAAGCGGTGCTGCGATGGTCGGAGGAGAACAAAATGCGAAGATTTCAATAACATGCATACATGTGTATGCTTGTGAAAAGTAATACTCTGTAGTGCAATAAACATACACAGTAATG
GATGCATCTACACCCTCGTCATCTTCAGAAATGGAGTTAGCAAACAAGAAGTGTGGGCACTGTGATTCAAAGGACATTGGGGCCATGTCTGAACAAACAGCAAATGAACTGCTTCAACAGATCCCAGGCTGGAGTATATTGAATGATGATGGGAAACCAAAGTTGCATAGATCGTGGAAAGCAAAAAGTTTCAAGAAGGG
ATTGGAACTTTTTCAGTGTGTATCAGATATTGCTGAAGCAGAAGgtcatcatcctgatcttcatcttgtcagctggaataatgtcagcctagatatctggacacattcaataggaaacagagacagccatgtgtccaagaaagtcaaaatgcttgtcccaaagGTGGTTTATCTGAGAAT

Intron 3 GTGAACTTCT ... ATCTATCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.5	64	23	10
A2	15.75	115	36	7
A3	22.78	61	26	10
A4	13.56	51	12	4
A5	9.43	24	3	2
A6	16.38	531	132	76
A7	17.64	432	118	67
A8	17.43	341	100	44
A9	17.47	489	132	75
A10	16.31	349	93	43

>TRINITY_DN103751_c0_g2_i4 from sample A3 / Example spliced isoform

GACTGTTGACATAGGAATTTGCTGGAACAGGGGCAATAATTTTTGCTATTGGATTTGTGGTCGCTTAATCAAGTTACTCTTCTGTTTAATTTTTTATTTGTATTTTGAATTTTTTTTGATGGGTTGGTCTGTGCCATGCTAGAGTATTGATACAACGTGGGCGACTTATGCAATCTCTGAGTATTTAATTCTCGTTGGCA
ACCTTCTACTCGTTTGATGGAAAAAAACAGCCAGCAATTGTAGCAATATTGGGTCAACAAAATTGTCATTGATGGAGAAAGCGGTGCTGCGATGGTCGGAGGAGAACAAAATGCGAAGATTTCAATAACATGCATACATGTGTATGCTTGTGAAAAGTAATACTCTGTAGTGCAATAAACATACACAGTAATGGATGCAT
CTACACCCTCGTCATCTTCAGAAATGGAGTTAGCAAACAAGAAGTGTGGGCACTGTGATTCAAAGGACATTGGGGCCATGTCTGAACAAACAGCAAATGAACTGCTTCAACAGATCCCAGGCTGGAGTATATTGAATGATGATGGGAAACCAAAGTTGCATAGATCGTGGAAAGCAAAAAGTTTCAAGAAGGGATTGGAA
CTTTTTCAGTGTGTATCAGATATTGCTGAAGCAGAAGGTGGTTTATCTGAGAATGACTTCATACTTGCAGCAAAAATAAGTGCTCTTGACCTGGAACCATTCCTACGGAAAAAGGCTGCTGCAAAATAGTTAGCATGAACTTGGCCTTTATATTCTTTAAGCACTGTTGGGATAGCTTCCACGTTGGTACTGTAAAATGT
TTACAAGTAGTAATGCTTTTACAGTATTATCTTTCTTTAGTTATTAGTGGAATCTGCTTTTCTTTCAATGGCTTTGTACACTTCTCGAGTATTGGAACATACCACGGATGGTCATACAAATGTAATAAGCATGGTAACACCTCTTCTGGTGATGTAGAGTAACATAATTTCTTTTTCATAGTTTATAGTTCAAAACCTTT
GATGAATACCTTTGCTAATACAGTACAAATTGTTTTTTCTTGATTCAGCTGTCTAGAATTTATAGAAACATAATTCCTTTTCAGACTAGGATAAGTATTTTTGCAGCAATAATCAATTTCTTTCCTTCCTGAGATTGGTCCGA

>TRINITY_DN103751_c0_g2_i3 from sample A3 / Example unspliced isoform:

GACTGTTGACATAGGAATTTGCTGGAACAGGGGCAATAATTTTTGCTATTGGATTTGTGGTCGCTTAATCAAGTTACTCTTCTGTTTAATTTTTTATTTGTATTTTGAATTTTTTTTGATGGGTTGGTCTGTGCCATGCTAGAGTATTGATACAACGTGGGCGACTTATGCAATCTCTGAGTATTTAATTCTCGTTGGCA
ACCTTCTACTCGTTTGATGGAAAAAAACAGCCAGCAATTGTAGCAATATTGGGTCAACAAAATTGTCATTGATGGAGAAAGCGGTGCTGCGATGGTCGGAGGAGAACAAAATGCGAAGATTTCAATAACATGCATACATGTGTATGCTTGTGAAAAGTAATACTCTGTAGTGCAATAAACATACACAGTAATGGATGCAT
CTACACCCTCGTCATCTTCAGAAATGGAGTTAGCAAACAAGAAGTGTGGGCACTGTGATTCAAAGGACATTGGGGCCATGTCTGAACAAACAGCAAATGAACTGCTTCAACAGgtgaacttctcagataaattatttatgaagtgaaaatgttgctggcacaatctgtttagagtgcttataaattcacgtaacaatcta
tccagATCCCAGGCTGGAGTATATTGAATGATGATGGGAAACCAAAGTTGCATAGATCGTGGAAAGCAAAAAGTTTCAAGAAGGGATTGGAACTTTTTCAGTGTGTATCAGATATTGCTGAAGCAGAAGGT