NA ----> NA
Intron 1 GTGAGTATCA ... GTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.86 | 10.6 | 4.8 | 10 |
| A2 | 54.81 | 15.6 | 13.4 | 18 |
| A3 | 36.37 | 8.8 | 1 | 5 |
| A4 | 68.15 | 3.8 | 7.9 | 8 |
| A5 | 45.27 | 7.2 | 2.9 | 6 |
| A6 | 54.49 | 5.9 | 3.9 | 7 |
| A7 | 49.79 | 27.6 | 13.7 | 27 |
| A8 | 53.46 | 17.4 | 12.7 | 20 |
| A9 | 49.46 | 19.4 | 5.9 | 19 |
| A10 | 36.51 | 19.1 | 17.3 | 10 |
>TRINITY_DN131811_c1_g1_i9 from sample A1 / Example spliced isoformGATTTTTCAACACTTTATTGAGTACTTCGAAAGTCGCACTTTCGTTTCCTCCTTTTTCTCCTGATTTAGCACAAGACTTATTGTTGGTCGAATTTCACACAACAGTGGTGAATGTTGCCATGAACTGCATTTCCATCTACACTGCCTGTGTAGGCCGCATTGGGCGCCTGGGATTCGGCATTCTTCTTTTTCTTCATGAG
TTCTCTGTTGTTCTCTGGTGGGTTATCTGCCTACTCAGGCAGATACCATTCTTTAAAAGGGCTTCTGATTCTGAGAGCTGTGTGGACCAGAAGGAAGGACAGGATCTCAATGGTTATGTGCGGGATTGGCTTCATTCAGAAACTTATACTTATGATGATGATGATGAGAAGCCTGGGGAAAACCCAATACAGATTCAGAA
GAACACTGTGAGATATCGTGAATTGATTACAGAGTTTCACGAGTCCAATGAATTCATCAGCCAGGTCCATGAATGTGATGGGGGTTCAGTTGAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAA
CAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGCAGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCA
AATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTAAGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGG
GTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGCAATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAA
CAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTATGTATTAGGGGTCTTTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCC
CAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAGATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAA
TGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGTTAGTATCATGGAGGAATCCATAATGACATTCTGGGATTTTGTTAAGG
CTGACAAGCACAAATGTTTGGTGCAGCACCAAATGCTGAATTTTTTGTGCATAACTCAAGAGGTAGAGGATCCTAATGACTCTACTCTTCTGCATTCCATCAGGAGAAGCGTGCATTGTAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAAGAGACTCGATCCTGTGGCCAGAGGGGAAGGA
ATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGATCATACATTTTAAGCTACCTGGATGCATTTCT
GCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGCTCAGATTCATGTGACCCAACTCCCAAGCCAA
CAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAATTAAATTCTTGATTGCAACAGAGAACTAGTT
TCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGAGTTACCCATTCCTGCCAGTGAATATTTGGAT
CTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTATATTGAAAGAACAAAGATTTGAATAGCTAAAA
TTTATCCA
>TRINITY_DN131811_c1_g1_i6 from sample A1 / Example unspliced isoform:GATTTTTCAACACTTTATTGAGTACTTCGAAAGTCGCACTTTCGTTTCCTCCTTTTTCTCCTGATTTAGCACAAGACTTATTGTTGGTCGAATTTCACACAACAGTGGTGAATGTTGCCATGAACTGCATTTCCATCTACACTGCCTGTGTAGGCCGCATTGGGCGCCTGGGATTCGGCATTCTTCTTTTTCTTCATGAG
TTCTCTGTTGTTCTCTGGTGGGTTATCTGCCTACTCAGGCAGATACCATTCTTTAAAAGGGCTTCTGATTCTGAGAGCTGTGTGGACCAGAAGGAAGGACAGGATCTCAATGGTTATGTGCGGGATTGGCTTCATTCAGAAACTTATACTTATGATGATGATGATGAGAAGCCTGGGGAAAACCCAATACAGATTCAGAA
GAACACTGTGAGATATCGTGAATTGATTACAGAGTTTCACGAGTCCAATGAATTCATCAGCCAGGTCCATGAATGTGATGGGGGTTCAGTTGAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAA
CAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGCAGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCA
AATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTAAGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGG
GTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGCAATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAA
CAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTATGTATTAGGTCAGTGGCTTCAGGGAAAATTACATTAACAAACCCTAATGATGTTTCAATGCATGTTTTTGTGAAGATAGTAATGTATGCTTTTGTTGTCACAGGGGTCT
TTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCCCAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAG
ATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAATGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTGAGATTCAGGAGGCCTG
CATGTTCATGAGTTTGTTTTGATTTGCATTTGTTTTGGCTTTTGATTTTTTCTTTTAAATTCGCAAGGCTCAGGGCGTAGAGGCAGCTCTATACTTACTAGCCACTATGTTCTTACCATGGCTTTGATTTTTGAGCTGGCGAGGCTTAGGGCTTAAACATAGCTGTATCCTTATGATTTTGAGCTGGTGAAGTTGAGGGC
TTAAAGATTTTCTATGCTTATTAGGTGCATATGTTCTCACTGTGTTAGGCTTTGATTTTTTATTTTGAGCTGGCAAAGCTCATGGCTTAAACATATCTCTATGCTTATTAGGCACCCTTGTTCTCACCGTGGCTTGAGATTTATTAGCCGGCAGCTTAGGAATTCAGGAACACTGAATGTTTATGGTTTCTCTTTCTCTA
CCACTCTCTCTCTTTTGGTGTGACAGGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGTTAGTATCATGGAGGAATCCATAATGACATTCTGGGATTTTGTTAAGGCTGACAAGCACAAATGTTTGGTGCAGCACCAAATGCTGAATTTTTTGTGCATAACTCAAG
AGGTAGAGGATCCTAATGACTCTACTCTTCTGCATTCCATCAGGAGAAGCGTGCATTGTgtgagtatcatgatgtgtcatttgacttcaaaagcttctaggttctgaaaaaacaaagttataagcagagagaccgtttgggtgtttgcagAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAA
GAGACTCGATCCTGTGGCCAGAGGGGAAGGAATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGAT
CATACATTTTAAGCTACCTGGATGCATTTCTGCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGC
TCAGATTCATGTGACCCAACTCCCAAGCCAACAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAA
TTAAATTCTTGATTGCAACAGAGAACTAGTTTCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGA
GTTACCCATTCCTGCCAGTGAATATTTGGATCTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTAT
ATTGAAAGAACAAAGATTTGAATAGCTAAAATTTATCCA
Intron 2 GTCAGTGGCT ... GTTGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.45 | 35 | 11.4 | 9 |
| A2 | 6.67 | 14 | 3.5 | 1 |
| A3 | 35.71 | 9 | 4.6 | 5 |
| A4 | 19.23 | 42 | 8.6 | 10 |
| A5 | 9.09 | 20 | 4 | 2 |
| A6 | 15.79 | 16 | 4.6 | 3 |
| A7 | 19.05 | 34 | 12 | 8 |
| A8 | 7.14 | 13 | 2.3 | 1 |
| A9 | 11.11 | 16 | 5.6 | 2 |
| A10 | 20 | 28 | 2.3 | 7 |
>TRINITY_DN131811_c1_g1_i9 from sample A1 / Example spliced isoformGATTTTTCAACACTTTATTGAGTACTTCGAAAGTCGCACTTTCGTTTCCTCCTTTTTCTCCTGATTTAGCACAAGACTTATTGTTGGTCGAATTTCACACAACAGTGGTGAATGTTGCCATGAACTGCATTTCCATCTACACTGCCTGTGTAGGCCGCATTGGGCGCCTGGGATTCGGCATTCTTCTTTTTCTTCATGAG
TTCTCTGTTGTTCTCTGGTGGGTTATCTGCCTACTCAGGCAGATACCATTCTTTAAAAGGGCTTCTGATTCTGAGAGCTGTGTGGACCAGAAGGAAGGACAGGATCTCAATGGTTATGTGCGGGATTGGCTTCATTCAGAAACTTATACTTATGATGATGATGATGAGAAGCCTGGGGAAAACCCAATACAGATTCAGAA
GAACACTGTGAGATATCGTGAATTGATTACAGAGTTTCACGAGTCCAATGAATTCATCAGCCAGGTCCATGAATGTGATGGGGGTTCAGTTGAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAA
CAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGCAGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCA
AATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTAAGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGG
GTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGCAATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAA
CAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTATGTATTAGGGGTCTTTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCC
CAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAGATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAA
TGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGTTAGTATCATGGAGGAATCCATAATGACATTCTGGGATTTTGTTAAGG
CTGACAAGCACAAATGTTTGGTGCAGCACCAAATGCTGAATTTTTTGTGCATAACTCAAGAGGTAGAGGATCCTAATGACTCTACTCTTCTGCATTCCATCAGGAGAAGCGTGCATTGTAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAAGAGACTCGATCCTGTGGCCAGAGGGGAAGGA
ATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGATCATACATTTTAAGCTACCTGGATGCATTTCT
GCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGCTCAGATTCATGTGACCCAACTCCCAAGCCAA
CAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAATTAAATTCTTGATTGCAACAGAGAACTAGTT
TCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGAGTTACCCATTCCTGCCAGTGAATATTTGGAT
CTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTATATTGAAAGAACAAAGATTTGAATAGCTAAAA
TTTATCCA
>TRINITY_DN131811_c1_g1_i6 from sample A1 / Example unspliced isoform:GATTTTTCAACACTTTATTGAGTACTTCGAAAGTCGCACTTTCGTTTCCTCCTTTTTCTCCTGATTTAGCACAAGACTTATTGTTGGTCGAATTTCACACAACAGTGGTGAATGTTGCCATGAACTGCATTTCCATCTACACTGCCTGTGTAGGCCGCATTGGGCGCCTGGGATTCGGCATTCTTCTTTTTCTTCATGAG
TTCTCTGTTGTTCTCTGGTGGGTTATCTGCCTACTCAGGCAGATACCATTCTTTAAAAGGGCTTCTGATTCTGAGAGCTGTGTGGACCAGAAGGAAGGACAGGATCTCAATGGTTATGTGCGGGATTGGCTTCATTCAGAAACTTATACTTATGATGATGATGATGAGAAGCCTGGGGAAAACCCAATACAGATTCAGAA
GAACACTGTGAGATATCGTGAATTGATTACAGAGTTTCACGAGTCCAATGAATTCATCAGCCAGGTCCATGAATGTGATGGGGGTTCAGTTGAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAA
CAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGCAGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCA
AATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTAAGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGG
GTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGCAATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAA
CAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTATGTATTAGgtcagtggcttcagggaaaattacattaacaaaccctaatgatgtttcaatgcatgtttttgtgaagatagtaatgtatgcttttgttgtcacagGGGTCT
TTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCCCAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAG
ATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAATGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTGAGATTCAGGAGGCCTG
CATGTTCATGAGTTTGTTTTGATTTGCATTTGTTTTGGCTTTTGATTTTTTCTTTTAAATTCGCAAGGCTCAGGGCGTAGAGGCAGCTCTATACTTACTAGCCACTATGTTCTTACCATGGCTTTGATTTTTGAGCTGGCGAGGCTTAGGGCTTAAACATAGCTGTATCCTTATGATTTTGAGCTGGTGAAGTTGAGGGC
TTAAAGATTTTCTATGCTTATTAGGTGCATATGTTCTCACTGTGTTAGGCTTTGATTTTTTATTTTGAGCTGGCAAAGCTCATGGCTTAAACATATCTCTATGCTTATTAGGCACCCTTGTTCTCACCGTGGCTTGAGATTTATTAGCCGGCAGCTTAGGAATTCAGGAACACTGAATGTTTATGGTTTCTCTTTCTCTA
CCACTCTCTCTCTTTTGGTGTGACAGGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGTTAGTATCATGGAGGAATCCATAATGACATTCTGGGATTTTGTTAAGGCTGACAAGCACAAATGTTTGGTGCAGCACCAAATGCTGAATTTTTTGTGCATAACTCAAG
AGGTAGAGGATCCTAATGACTCTACTCTTCTGCATTCCATCAGGAGAAGCGTGCATTGTGTGAGTATCATGATGTGTCATTTGACTTCAAAAGCTTCTAGGTTCTGAAAAAACAAAGTTATAAGCAGAGAGACCGTTTGGGTGTTTGCAGAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAA
GAGACTCGATCCTGTGGCCAGAGGGGAAGGAATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGAT
CATACATTTTAAGCTACCTGGATGCATTTCTGCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGC
TCAGATTCATGTGACCCAACTCCCAAGCCAACAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAA
TTAAATTCTTGATTGCAACAGAGAACTAGTTTCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGA
GTTACCCATTCCTGCCAGTGAATATTTGGATCTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTAT
ATTGAAAGAACAAAGATTTGAATAGCTAAAATTTATCCA
Intron 3 GTGAGATTCA ... GGTGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.43 | 30.8 | 12.4 | 16 |
| A2 | 43.37 | 18.8 | 10.4 | 14 |
| A3 | 44.35 | 11.4 | 21.2 | 9 |
| A4 | 53.35 | 9.7 | 10.4 | 11 |
| A5 | 20.37 | 23.9 | 2.8 | 6 |
| A6 | 34.61 | 24.9 | 5.7 | 13 |
| A7 | 40.27 | 38.8 | 9.5 | 26 |
| A8 | 25.4 | 17.7 | 8.5 | 6 |
| A9 | 41.45 | 13.1 | 6.6 | 9 |
| A10 | 26.5 | 22.3 | 7.6 | 8 |
>TRINITY_DN131811_c1_g1_i9 from sample A1 / Example spliced isoformGATTTTTCAACACTTTATTGAGTACTTCGAAAGTCGCACTTTCGTTTCCTCCTTTTTCTCCTGATTTAGCACAAGACTTATTGTTGGTCGAATTTCACACAACAGTGGTGAATGTTGCCATGAACTGCATTTCCATCTACACTGCCTGTGTAGGCCGCATTGGGCGCCTGGGATTCGGCATTCTTCTTTTTCTTCATGAG
TTCTCTGTTGTTCTCTGGTGGGTTATCTGCCTACTCAGGCAGATACCATTCTTTAAAAGGGCTTCTGATTCTGAGAGCTGTGTGGACCAGAAGGAAGGACAGGATCTCAATGGTTATGTGCGGGATTGGCTTCATTCAGAAACTTATACTTATGATGATGATGATGAGAAGCCTGGGGAAAACCCAATACAGATTCAGAA
GAACACTGTGAGATATCGTGAATTGATTACAGAGTTTCACGAGTCCAATGAATTCATCAGCCAGGTCCATGAATGTGATGGGGGTTCAGTTGAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAA
CAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGCAGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCA
AATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTAAGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGG
GTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGCAATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAA
CAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTATGTATTAGGGGTCTTTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCC
CAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAGATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAA
TGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGTTAGTATCATGGAGGAATCCATAATGACATTCTGGGATTTTGTTAAGG
CTGACAAGCACAAATGTTTGGTGCAGCACCAAATGCTGAATTTTTTGTGCATAACTCAAGAGGTAGAGGATCCTAATGACTCTACTCTTCTGCATTCCATCAGGAGAAGCGTGCATTGTAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAAGAGACTCGATCCTGTGGCCAGAGGGGAAGGA
ATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGATCATACATTTTAAGCTACCTGGATGCATTTCT
GCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGCTCAGATTCATGTGACCCAACTCCCAAGCCAA
CAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAATTAAATTCTTGATTGCAACAGAGAACTAGTT
TCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGAGTTACCCATTCCTGCCAGTGAATATTTGGAT
CTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTATATTGAAAGAACAAAGATTTGAATAGCTAAAA
TTTATCCA
>TRINITY_DN131811_c1_g1_i6 from sample A1 / Example unspliced isoform:GATTTTTCAACACTTTATTGAGTACTTCGAAAGTCGCACTTTCGTTTCCTCCTTTTTCTCCTGATTTAGCACAAGACTTATTGTTGGTCGAATTTCACACAACAGTGGTGAATGTTGCCATGAACTGCATTTCCATCTACACTGCCTGTGTAGGCCGCATTGGGCGCCTGGGATTCGGCATTCTTCTTTTTCTTCATGAG
TTCTCTGTTGTTCTCTGGTGGGTTATCTGCCTACTCAGGCAGATACCATTCTTTAAAAGGGCTTCTGATTCTGAGAGCTGTGTGGACCAGAAGGAAGGACAGGATCTCAATGGTTATGTGCGGGATTGGCTTCATTCAGAAACTTATACTTATGATGATGATGATGAGAAGCCTGGGGAAAACCCAATACAGATTCAGAA
GAACACTGTGAGATATCGTGAATTGATTACAGAGTTTCACGAGTCCAATGAATTCATCAGCCAGGTCCATGAATGTGATGGGGGTTCAGTTGAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAA
CAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGCAGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCA
AATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTAAGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGG
GTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGCAATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAA
CAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTATGTATTAGGTCAGTGGCTTCAGGGAAAATTACATTAACAAACCCTAATGATGTTTCAATGCATGTTTTTGTGAAGATAGTAATGTATGCTTTTGTTGTCACAGGGGTCT
TTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCCCAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAG
ATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAATGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGgtgagattcaggaggcctg
catgttcatgagtttgttttgatttgcatttgttttggcttttgattttttcttttaaattcgcaaggctcagggcgtagaggcagctctatacttactagccactatgttcttaccatggctttgatttttgagctggcgaggcttagggcttaaacatagctgtatccttatgattttgagctggtgaagttgagggc
ttaaagattttctatgcttattaggtgcatatgttctcactgtgttaggctttgattttttattttgagctggcaaagctcatggcttaaacatatctctatgcttattaggcacccttgttctcaccgtggcttgagatttattagccggcagcttaggaattcaggaacactgaatgtttatggtttctctttctcta
ccactctctctcttttggtgtgacagGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGTTAGTATCATGGAGGAATCCATAATGACATTCTGGGATTTTGTTAAGGCTGACAAGCACAAATGTTTGGTGCAGCACCAAATGCTGAATTTTTTGTGCATAACTCAAG
AGGTAGAGGATCCTAATGACTCTACTCTTCTGCATTCCATCAGGAGAAGCGTGCATTGTGTGAGTATCATGATGTGTCATTTGACTTCAAAAGCTTCTAGGTTCTGAAAAAACAAAGTTATAAGCAGAGAGACCGTTTGGGTGTTTGCAGAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAA
GAGACTCGATCCTGTGGCCAGAGGGGAAGGAATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGAT
CATACATTTTAAGCTACCTGGATGCATTTCTGCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGC
TCAGATTCATGTGACCCAACTCCCAAGCCAACAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAA
TTAAATTCTTGATTGCAACAGAGAACTAGTTTCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGA
GTTACCCATTCCTGCCAGTGAATATTTGGATCTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTAT
ATTGAAAGAACAAAGATTTGAATAGCTAAAATTTATCCA
Intron 4 GTACTTGAGC ... TTTGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.44 | 29 | 9 | 5 |
| A2 | 15.38 | 22 | 6 | 2 |
| A3 | 17.39 | 19 | 7 | 1 |
| A4 | 25.49 | 19 | 8 | 5 |
| A5 | 25.37 | 25 | 7 | 10 |
| A6 | 11.11 | 4 | 1 | 0 |
| A7 | 15.38 | 11 | 3 | 1 |
| A8 | 14.29 | 6 | 0 | 2 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 12.5 | 7 | 2 | 0 |
>TRINITY_DN131811_c1_g1_i9 from sample A1 / Example spliced isoformGATTTTTCAACACTTTATTGAGTACTTCGAAAGTCGCACTTTCGTTTCCTCCTTTTTCTCCTGATTTAGCACAAGACTTATTGTTGGTCGAATTTCACACAACAGTGGTGAATGTTGCCATGAACTGCATTTCCATCTACACTGCCTGTGTAGGCCGCATTGGGCGCCTGGGATTCGGCATTCTTCTTTTTCTTCATGAG
TTCTCTGTTGTTCTCTGGTGGGTTATCTGCCTACTCAGGCAGATACCATTCTTTAAAAGGGCTTCTGATTCTGAGAGCTGTGTGGACCAGAAGGAAGGACAGGATCTCAATGGTTATGTGCGGGATTGGCTTCATTCAGAAACTTATACTTATGATGATGATGATGAGAAGCCTGGGGAAAACCCAATACAGATTCAGAA
GAACACTGTGAGATATCGTGAATTGATTACAGAGTTTCACGAGTCCAATGAATTCATCAGCCAGGTCCATGAATGTGATGGGGGTTCAGTTGAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAA
CAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGCAGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCA
AATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTAAGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGG
GTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGCAATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAA
CAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTATGTATTAGGGGTCTTTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCC
CAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAGATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAA
TGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGTTAGTATCATGGAGGAATCCATAATGACATTCTGGGATTTTGTTAAGG
CTGACAAGCACAAATGTTTGGTGCAGCACCAAATGCTGAATTTTTTGTGCATAACTCAAGAGGTAGAGGATCCTAATGACTCTACTCTTCTGCATTCCATCAGGAGAAGCGTGCATTGTAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAAGAGACTCGATCCTGTGGCCAGAGGGGAAGGA
ATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGATCATACATTTTAAGCTACCTGGATGCATTTCT
GCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGCTCAGATTCATGTGACCCAACTCCCAAGCCAA
CAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAATTAAATTCTTGATTGCAACAGAGAACTAGTT
TCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGAGTTACCCATTCCTGCCAGTGAATATTTGGAT
CTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTATATTGAAAGAACAAAGATTTGAATAGCTAAAA
TTTATCCA
>TRINITY_DN131811_c1_g1_i2 from sample A1 / Example unspliced isoform:GATTTTTCAACACTTTATTGAGTACTTCGAAAGTCGCACTTTCGTTTCCTCCTTTTTCTCCTGATTTAGCACAAGACTTATTGTTGGTCGAATTTCACACAACAGTGGTGAATGTTGCCATGAACTGCATTTCCATCTACACTGCCTGTGTAGGCCGCATTGGGCGCCTGGGATTCGGCATTCTTCTTTTTCTTCATGAG
TTCTCTGTTGTTCTCTGGTGGGTTATCTGCCTACTCAGGCAGATACCATTCTTTAAAAGgtacttgagctccattcttcttatttagccctgaatcgttttcagttattgaaaaccatgactaattgcattgcattatgtgtttgttacagGGCTTCTGATTCTGAGAGCTGTGTGGACCAGAAGGAAGGACAGGATCTC
AATGGTTATGTGCGGGATTGGCTTCATTCAGAAACTTATACTTATGATGATGATGATGAGAAGCCTGGGGAAAACCCAATACAGATTCAGAAGAACACTGTGAGATATCGTGAATTGATTACAGAGTTTCACGAGTCCAATGAATTCATCAGCCAGGTCCATGAATGTGATGGGGGTTCAGTTGAAGAAGGTGATCATGG
CATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAACAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGCAGTAGATAATGGTTGCA
TGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCAAATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTAAGAACCCATTAGATAAC
TGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGGGTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGCAATCTGTCTGTTATACC
TGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAACAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTATGTATTAGGGGTCTTTC
AGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCCCAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAGATG
ACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAATGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTGAGATTCAGGAGGCCTGCAT
GTTCATGAGTTTGTTTTGATTTGCATTTGTTTTGGCTTTTGATTTTTTCTTTTAAATTCGCAAGGCTCAGGGCGTAGAGGCAGCTCTATACTTACTAGCCACTATGTTCTTACCATGGCTTTGATTTTTGAGCTGGCGAGGCTTAGGGCTTAAACATAGCTGTATCCTTATGATTTTGAGCTGGTGAAGTTGAGGGCTTA
AAGATTTTCTATGCTTATTAGGTGCATATGTTCTCACTGTGTTAGGCTTTGATTTTTTATTTTGAGCTGGCAAAGCTCATGGCTTAAACATATCTCTATGCTTATTAGGCACCCTTGTTCTCACCGTGGCTTGAGATTTATTAGCCGGCAGCTTAGGAATTCAGGAACACTGAATGTTTATGGTTTCTCTTTCTCTACCA
CTCTCTCTCTTTTGGTGTGACAGGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGTTAGTATCATGGAGGAATCCATAATGACATTCTGGGATTTTGTTAAGGCTGACAAGCACAAATGTTTGGTGCAGCACCAAATGCTGAATTTTTTGTGCATAACTCAAGAGG
TAGAGGATCCTAATGACTCTACTCTTCTGCATTCCATCAGGAGAAGCGTGCATTGTGTGAGTATCATGATGTGTCATTTGACTTCAAAAGCTTCTAGGTTCTGAAAAAACAAAGTTATAAGCAGAGAGACCGTTTGGGTGTTTGCAGAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAAGAG
ACTCGATCCTGTGGCCAGAGGGGAAGGAATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGATCAT
ACATTTTAAGCTACCTGGATGCATTTCTGCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGCTCA
GATTCATGTGACCCAACTCCCAAGCCAACAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAATTA
AATTCTTGATTGCAACAGAGAACTAGTTTCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGAGTT
ACCCATTCCTGCCAGTGAATATTTGGATCTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTATATT
GAAAGAACAAAGATTTGAATAGCTAAAATTTATCCA
Intron 5 GTTAGTATCA ... ATTCCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52 | 17 | 25.5 | 11.9 |
| A2 | 80.6 | 6 | 29 | 21.1 |
| A3 | 63.04 | 6 | 13.5 | 7.3 |
| A4 | 80.4 | 2 | 9 | 7.7 |
| A5 | 53.37 | 10 | 19 | 5 |
| A6 | 58.59 | 11 | 26.5 | 5 |
| A7 | 70.41 | 13 | 33.5 | 28.5 |
| A8 | 65 | 10 | 23 | 14.4 |
| A9 | 70.17 | 6 | 20 | 8.5 |
| A10 | 80.09 | 8 | 38.5 | 26 |
>TRINITY_DN36246_c0_g2_i3 from sample A6 / Example spliced isoformGAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAACAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGC
AGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCAAATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTA
AGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGGGTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGC
AATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAACAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTA
TGTATTAGGGGTCTTTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAGTTCCCAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATA
GCAAGTTTCGGGAGATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAGAGAATGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTTCC
ATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGGAGAAGCGTGCATTGTAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAAGAGACTCGATCCTGTGGCCAGAGGGGAAGGAATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCAC
GGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGATCATACATTTTAAGCTACCTGGATGCATTTCTGCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAA
ATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGCTCAGATTCATGTGACCCAACTCCCAAGCCAACAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAA
AAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAATTAAATTCTTGATTGCAACAGAGAACTAGTTTCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATC
AGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGAGTTACCCATTCCTGCCAGTGAATATTTGGATCTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGG
AGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTATATTGAAAGAACAAAGATTTGAATAGCTAAAATTTATCCATTTTACCCCC
>TRINITY_DN36246_c0_g2_i4 from sample A6 / Example unspliced isoform:GAAGAAGGTGATCATGGCATCAATGAATCCCTCAATGGGTATTCTGAAGGATTTCAGGATACATTGGTCATGGCGGAAGCTTCAGAATCCCTCAATGGGTGCTTTGAAACAGTTCAAAATACATTGGTTATGGCGGAAGCAGTTGAAGCCGAGGATGGGGAAATAGAGAGAGGAGAAGACCCTGGTGAAGATACATTTGC
AGTAGATAATGGTTGCATGTATGCCTCCAAGGACTTGGTCGAGAACTGTTCCGAAACAGTTCAACATGTGTCTGATAATGTTGAGGAAGATGAGTTACAAGGCACTGCAAATGAGGAAGAACATGTTGGGTTAGTTATGGATGAAAATGTGTTTAGTGTTGATACAGTTGCAAGTCATGATGCATGTGATGATATCTCTA
AGAACCCATTAGATAACTGTTCTGCAACTAATGAAAATGCATCGGCTATGGAGGAGAAAGAGGAGTTTGGAAGAATTGAAGACCAAGGCGATGAGGCTTCTGTTGATGGGTTTTCATCAGTAGAGGACTATGAGGATGATGAAGATCATGATTTTTTTATAGAGAAGCTTCGGTCAGAAATAAGAAGAATGAGAGGGGGC
AATCTGTCTGTTATACCTGAAGAAAGCGAGTCCGATCTAGCTGAGTCCAGTGCTTGGGAGAGCGAGAGTAGAACTTCAATGGCGGATTCTTCACCGTCATTCAGAAAAACAGAGCCGGAAGAGGATTCTAATGAAGTCTTCTACGATAAATATGCAGAGAGGATGCGCTGTTTCGATAAGCTTAACTATCAGCAGACCTA
TGTATTAGGTCAGTGGCTTCAGGGAAAATTACATTAACAAACCCTAATGATGTTTCAATGCATGTTTTTGTGAAGATAGTAATGTATGCTTTTGTTGTCACAGGGGTCTTTCAGAGCCATGAAACCCTAAGGCCTAAATCCCAGGGGGTTGCCTCCAGGCTGAAGAGATATATTCTTCACAAGCCCGAGGCCACAGACAG
TTCCCAGGATCCCATGAAGAAACTGCAACAGGACCTGGAGACCATTTATGTCGGCCAGACTTGTTTGTCTTGGGAGGCTCTGCATTGGCAATATAGCAAGTTTCGGGAGATGACGTTGCGTGGATCAGCAGAGGATTTGTTTTATGACCGCGTTGCGGATCAGTTTCAGCAGTTTCAAGTCTTGTTACAGAGGTTTTTAG
AGAATGATCAGTTTGAAGGCCCCAGGATTCTGAATTATGTTAAGAGTCGATGCATATGGAGCAGCTTGCTTCAAGTTCCTTTTGTCAAAGGTTCCATGAAGGAAGCAGGGACAGAAGAAGAGATAGAAGCAAATAAAATAACTGCAGCTCAGCTGgttagtatcatggaggaatccataatgacattctgggattttgtt
aaggctgacaagcacaaatgtttggtgcagcaccaaatgctgaattttttgtgcataactcaagaggtagaggatcctaatgactctactcttctgcattccatcagGAGAAGCGTGCATTGTAAGAAGGTCAAGGTGCGAGAGCTTCAAAGGAGAGGAAAATGCTTGATAAAGAGACTCGATCCTGTGGCCAGAGGGGA
AGGAATAGAGATCTTGATGGCCCTTGTGGACATGAAATTAGTATCACGGGTATTGAAGATGTCCAGGATCACTTCACATCATCTGCAGTGGTGCCAGAAGAAACTCGGTAAGCTCAGTATTCGCGAGGGTAAGGTACATAGAGCACGCTGTACTGTGTTATTTCCGCATTGATCATACATTTTAAGCTACCTGGATGCAT
TTCTGCGGAATTGCAGACAGAATACAGGAGTTAAAAATGCTAACTAAATATTTATCCAGATGGGCAGTTGGGTTTTAGGGGTTTCACAGCATCATGAAAACCACAGCTGTGTATTTTGTTTTCTAATTTATTGCTTTGGGAGCGTTATGCTTCCTGGCAGAAGCCACTAGAGCTCAGATTCATGTGACCCAACTCCCAAG
CCAACAGTGATTTTATCATCTGAGATCTCTTTTGGAAAAGAAAGAAAAAGGAAAACCCTGGCAACAAGAATGTTGAGGCGGTTGAGCATCTCCAAAGGAGAGACATCCAACTAGATATACTAGATATACTAGATATACTTGCAAAACAGGAGATGCTATTCTCATCTGGCAAATTAAATTCTTGATTGCAACAGAGAACT
AGTTTCAAAGCTGCAATATGGAAATTTTGTATAAGAGTTTTTCAATCAGGAACATGAGCCTGTAGTTTAATGGCAGAGTGGTGAAATTGCTGGACAAGGTCTGAGGTTCATTTTTGTCAATCCACTTACAATAGTCATTAAAAATGCCTGCCAGTGAATTTTTGGATCTGGGAGTTACCCATTCCTGCCAGTGAATATTT
GGATCTGGGAGTTAACCATGCCTGCCAGTCGATGTTTTGGATCTAGGAGAATTTCCAGGCTAGCTACCATTTAGATTTTGAGTTGGGGTTCTCTACTGTGCACTCTGTTGTCTCTGCAGGAATTCTTGTATAATATCTTGATACGAGGCCCTTAAATGTGGTTAACTCTCTATATTGAAAGAACAAAGATTTGAATAGCT
AAAATTTATCCATTTTACCCCC