sp|Q8RXF1|SF3A1_ARATH ----> Probable splicing factor 3A subunit 1

Intron 1 GTCGATGGAA ... TCACTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	62.96	10	17	1.4
A2	36.87	22	12.9	7
A3	33.33	30	15	2.1
A4	36.36	7	4	0
A5	33.33	6	3	0
A6	11.76	15	2	2.1
A7	27.27	24	9	2.8
A8	21.95	32	9	4.2
A9	41.67	21	15	3.4
A10	16	21	4	4.2

>TRINITY_DN119850_c2_g4_i7 from sample A1 / Example spliced isoform

CCAGAATCCACTCCGGATGAAGGGTGTCATTAGCGTTAAATAATCAGGGAATGGGAGAATGGACGCAGTGAGAGGAGTGGTAGAGGCGATCCATTCTTGTCCTACACAGGTCGTTTTGTACTTGAGCGGAGGCACTGGGATGGCTAATGTCTGTACCTCGGGCGTCTTCTACAGTTCTTGAGGTGGTGGTTCCCTACTCT
CGCAGTTCCATGGTTCAATTGCTGCGGGGAAAGGTGCCAACAAGTTTCACATCGCAAGAAACTTCAGATGACTTGTCTTTGTTTGCATACAACCGTGCACTGAAACTCGCTATGACAGGAATGCCAGTATTGGGAATTGGCTTTGTAGGAGCTCTAGCATCTATTCCCTCAAAGCAAGGAGATCATAGGTGTTACGTGTC
TGCAAGAACATCTGAACAGATGTGGAGGTATCATGTGGTTTTGTCAAAGGGATCAAGGGATCGTAAAGAAGAAGACACATTCTCAAGTCAGCTTCTACTCAAGGGAATAGCTAATGCGTGCAAGGTCTCGATGGAATCGGGTATGGATTTTCGTGATGATGAAGTAATTGAGGAGTCTGAAGAGTCCTATGATGAAGACC
AACAATTGGAACAACTTTTATCTGGACAAATATGCATGAAAGTTTACTCATTTGAGAAAGGAATACATGTTCCCAAGTCAGGAAGAAGAGTAATTTTGTCTGGGTCATTTAATCCCTTACATGAGGGCCACCTCAAGCTTTTGGACTTAGCTTCCAGTATATCTAAAGATGGATTTCCATGCTTTGAAATCTCGGCTATC
AATGCTGACAAGCCTCCATTGACGCTGAAACAAATCAAGGATCGAGTCAAACAATTTGATGCTGTAGGAAAAACAGTCATTATAACAAATCAGCCATACTTTTACAAGAAAGCAGAACTTTTACCGGATAGTACTTTCATAATTGGGGCAGATACTGCTGCTAGGCTTATCAATCCAAAGTATTATGAG

>TRINITY_DN119850_c2_g4_i2 from sample A1 / Example unspliced isoform:

CCAGAATCCACTCCGGATGAAGGGTGTCATTAGCGTTAAATAATCAGGGAATGGGAGAATGGACGCAGTGAGAGGAGTGGTAGAGGCGATCCATTCTTGTCCTACACAGGTCGTTTTGTACTTGAGCGGAGGCACTGGGATGGCTAATGTCTGTACCTCGGGCGTCTTCTACAGTTCTTGAGGTGGTGGTTCCCTACTCT
CGCAGTTCCATGGTTCAATTGCTGCGGGGAAAGGTGCCAACAAGTTTCACATCGCAAGAAACTTCAGATGACTTGTCTTTGTTTGCATACAACCGTGCACTGAAACTCGCTATGACAGGAATGCCAGTATTGGGAATTGGCTTTGTAGGAGCTCTAGCATCTATTCCCTCAAAGCAAGGAGATCATAGGTGTTACGTGTC
TGCAAGAACATCTGAACAGATGTGGAGGTATCATGTGGTTTTGTCAAAGGGATCAAGGGATCGTAAAGAAGAAGACACATTCTCAAGTCAGCTTCTACTCAAGGGAATAGCTAATGCGTGCAAGGTCTCGATGGAATCGGGTATGGATTTTCGTGATGATGAAGTAATTGAGGAGTCTGAAGAGTCCTATGATGAAGACC
AACAATTGGAACAACTTTTATCTGGACAAATATGCATGAAAGTTTACTCATTTGAGAAAGgtcgatggaaagttttatttttctcttcttggtcaatgtgctaactgtactaatttgaaaaaagaaatgttcaatttgtgagatctctcacttgcagGAATACATGTTCCCAAGTCAGGAAGAAGAGTAATTTTGTCTGG
GTCATTTAATCCCTTACATGAGGGCCACCTCAAGCTTTTGGACTTAGCTTCCAGTATATCTAAAGATGGATTTCCATGCTTTGAAATCTCGGCTATCAATGCTGACAAGCCTCCATTGACGCTGAAACAAATCAAGGATCGAGTCAAACAATTTGATGCTGTAGGAAAAACAGTCATTATAACAAATCAGCCATACTTTT
ACAAGAAAGCAGAACTTTTACCGGATAGTACTTTCATAATTGGGGCAGATACTGCTGCTAGGCTTATCAATCCAAAGTATTATGAG

Intron 2 GTGGGTGTAC ... TCATATGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	76.37	1.9	6	5.9
A2	55.56	6	10	5
A3	59.55	8.3	13	10.9
A4	45.57	7.6	8	4.6
A5	100	0	0	1
A6	58.41	17.4	19	29.9
A7	61.36	23.4	30	44.3
A8	60.63	23.7	35	37.6
A9	51.56	25.9	13	38.6
A10	58.19	15.3	25	17.3

>TRINITY_DN108724_c0_g1_i2 from sample A2 / Example spliced isoform

GGGGTACCAGAATCCACTCCGGATGAAGGGTGTCATTAGCGTTAAATAATCAGGGAATGGGAGAATGGACGCAGTGAGAGGAGTGGTAGAGGCGATCCATTCTTGTCCTACACAGGTCGTTTTGTACTTGAGCGGAGGTGCATCACAGGCACTGGGATGGCTAATGTCTGTACCTCGGGCGTCTTCTACAGTTCTTGAGG
TGGTGGTTCCCTACTCTCGCAGTTCCATGGTTCAATTGCTGCGGGGAAAGGTGCCAACAAGTTTCACATCGCAAGAAACTTCAGATGACTTGTCTTTGTTTGCATACAACCGTGCACTGAAACTCGCTATGACAGGAATGCCAGTATTGGGAATTGGCTTTGTAGGAGCTCTAGCATCTATTCCCTCAAAGCAAGGAGAT
CATAGGTGTTACGTGTCTGCAAGAACATCTGAACAGATGTGGAGGTATCATGTGGTTTTGTCAAAGGGATCAAGGGATCGTAAAGAAGAAGACACATTCTCAAGTCAGCTTCTACTCAAGGGAATAGCTAATGCGTGCAAGGTCTCGATGGAATCGGGTATGGATTTTCGTGATGATGAAGTAATTGAGGAGTCTGAAGA
GTCCTATGATGAAGACCAACAATTGGAACAACTTTTATCTGGACAAATATGCATGAAAGTTTACTCATTTGAGAAAGGAATACATGTTCCCAAGTCAGGAAGAAGAGTAATTTTGTCTGGGTCATTTAATCCCTTACATGAGGGCCACCTCAAGCTTTTGGACTTAGCTTCCAGTATATCTAAAGATGGATTTCCATGCT
TTGAAATCTCGGCTATCAATGCTGACAAGCCTCCATTGACGCTGAAACAAATCAAGGATCGAGTCAAACAATTTGATGCTGTAGGAAAAACAGTCATTATAACAAATCAGCCATACTTTTACAAGAAAGCAGAACTTTTACCGGATAGTACTTTCATAATTGGGGCAGATACTGCTGCTAGGCTTATCAATCCAAAGTAT
TATGAGAACAACTATGAAAGAATGTTGGAAGTGCTATTAGGTGTGAAACAGCTTGGTTGCAACTTCCTCGTAGGTGGTAGGATTATCGATGGCACCTTCAAGGTTCTCTCAGATTTTGACGTTCCTGAGCAGTTGAGGGACATGTTTAAGTCAATACCTGAAGGTGTGTTCCGTATGGATATATCCTCAACAGAAATTAG
AGCAAAGCTTGTCCACCAATCGGAGCAAGAACCCGGCTATAAGTGGCGCAC

>TRINITY_DN108724_c0_g1_i7 from sample A2 / Example unspliced isoform:

GGGGTACCAGAATCCACTCCGGATGAAGGGTGTCATTAGCGTTAAATAATCAGGGAATGGGAGAATGGACGCAGTGAGAGGAGTGGTAGAGGCGATCCATTCTTGTCCTACACAGGTCGTTTTGTACTTGAGCGGAGGTGCATCACAGGCACTGGGATGGCTAATGTCTGTACCTCGGGCGTCTTCTACAGTTCTTGAGG
TGGTGGTTCCCTACTCTCGCAGTTCCATGGTTCAATTGCTGCGGGGAAAGGTGCCAACAAGTTTCACATCGCAAGAAACTTCAGATGACTTGTCTTTGTTTGCATACAACCGTGCACTGAAACTCGCTATGACAGGAATGCCAGTATTGGGAATTGGCTTTGTAGGAGCTCTAGCATCTATTCCCTCAAAGCAAGGAGAT
CATAGGTGTTACGTGTCTGCAAGAACATCTGAACAGATGTGGAGGTATCATGTGGTTTTGTCAAAGGGATCAAGGGATCGTAAAGAAGAAGACACATTCTCAAGTCAGCTTCTACTCAAGGGAATAGCTAATGCGTGCAAGGTCTCGATGGAATCGGGTATGGATTTTCGTGATGATGAAGTAATTGAGGAGTCTGAAGA
GTCCTATGATGAAGACCAACAATTGGAACAACTTTTATCTGGACAAATATGCATGAAAGTTTACTCATTTGAGAAAGGAATACATGTTCCCAAGTCAGGAAGAAGAGTAATTTTGTCTGGGTCATTTAATCCCTTACATGAGGGCCACCTCAAGCTTTTGGACTTAGCTTCCAGTATATCTAAAGATGGATTTCCATGCT
TTGAAATCTCGGCTATCAATGCTGACAAGCCTCCATTGACGCTGAAACAAATCAAGGATCGAGTCAAACAATTTGATGCTGTAGGAAAAACAGTCATTATAACAAATCAGCCATACTTTTACAAGAAAGCAGAACTTTTACCGGATAGTACTTTCATAATTGGGGCAGATACTGCTGCTAGGCTTATCAATCCAAAGTAT
TATGAGAACAACTATGAAAGAATGTTGGAAGTGCTATTAGGTGTGAAACAGCTTGGTTGCAACTTCCTCGTAGGTGGTAGGATTATCGATGGCACCTTCAAGGTTCTCTCAGATTTTGACGTTCCTGAGCAGTTGAGGGACATGTTTAAGTCAATACCTGAAGGTGTGTTCCGTATGGATATATCCTCAACAGAAATTAG
AGCAAAGCTTGgtgggtgtactgatcccttgtagtaaatatcgaatgtggcagtgggctattcgtattatgcttgtgaagtttagaacaagtccttgctgtgcttgaatttgatgctttgaaaacattgaagcagtctctgaaagtactcatggatcatatgtagTCCACCAATCGGAGCAAGAACCCGGCTATAAGTGG
CGCAC