sp|Q8L960|SVR1_ARATH ----> Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic
Intron 1 GTTTATACGA ... TTTCCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.81 | 24 | 7 | 8 |
| A2 | 30.23 | 15 | 7 | 6 |
| A3 | 31.43 | 12 | 3 | 8 |
| A4 | 29.73 | 13 | 3 | 8 |
| A5 | 14.29 | 3 | 0 | 1 |
| A6 | 14.29 | 42 | 8 | 6 |
| A7 | 11.58 | 42 | 9 | 2 |
| A8 | 23.53 | 39 | 21 | 3 |
| A9 | 19.46 | 60 | 14 | 15 |
| A10 | 15.11 | 59 | 13 | 8 |
>TRINITY_DN126589_c2_g1_i2 from sample A1 / Example spliced isoformAAAGAAAATATATAAAACAAAGGGCAGTGTGTAATGGCTCTGGCTTATTGCATCAAAGTAGTTTTGTTCACAACTACAGGAGTACTTCAACTAAATTATCTTTTCCGCTCATGCAACGATTATGGAATGTTGATGACAACAGGAGTGGATTGGATTGAGTGATTAATTTTGCAAGGGCCTTTACTTGTTCTTGTCATGGG
ATGTAAATAAGGCATTTCAAGAGGCGCTACTTGAGGCCCGAAATGGCAGCAGCTTCATCATCTTCATCTCTGGTGCTATTGTCTTCCTTGTTTGGAAGAAGAATAGGTGGAGGAGCAGAATGGGTGAGGCTGTTTTCACCTCCCACAAGCACACGCCCTCTGCCATCAAACATATCGTCGTCGATAATAATAAGAGCTTC
ATCTTCTTCTTTCAATATTTCGTTCGCGGGAGTGAAGACAAGCGGTGCCAAAACTCAAACAAGTAATAATGAGGGTAATAGCAAGGGCATGGTCATCCCGTGGATTGTAGAGGACGCAGAGGGAAATTTGAGCTTTCAAACTAAACGCCCGGATGAGTTAGATTATCGTTCATCTCCATCTCCATCTCCCTCCTCATCTT
CATCACCACCCTCTCCCAAAGTCTCCAAGCCGAAGCAGCAGCAGGGGCCCCCGCCTCCCAAGTATTCAAAAGCAGCTCGCAGATTTTACAACGAGGCTTTTAGAAAACCTGAGCGCCTTAGCAAGGTGTTGGCCAAAGCTGGGGTGGCTTCAAGGCGGGGGAGTGAAGAAGTTATTTTTGAAGGCCGCGTTACAGTAAAT
GGAGCAATATGCAAGACTCCTCAGACACTTGTTGATCCGTTGAAGGATGCTATCTATATTGATGGAAATTCCCTTCCAAAAAAGTTACCTCCAAAGTTGTATTTTGCTCTGAACAAACCGAAAGGGTACATCTGCTCAAGTGGGGAAGATGACTCGAAATCAGTTTTGTCACTACTTGACGAATATTTGAAAATATGGAT
TAAAAGAAATACAGGTGTGCCGAAGCCCAGATTGTTTACAGTAGGCCGACTTGATGTTGCCACATCTGGATTGATCCTTGTCACAAATGATGGGGAATTTGCTCAAAAGGTGGCACATCCTTCATCAGGGCTCACAAAAGAGTATGTTGCAGCAGTAGAGGGGAAAGTAACTAAGAGACATTTGCAGGCCATTAGTGAAG
GCACACTTGTCGAAGGAGTTCATTGTACCCCTGTAGCTGTTGAACTTATATCTGCACAAGCAAATGAACGGAAGCAAAGGCTGCGGATTGTTGTTTGTGAGGGGAGAAACCATGAAGTTCGCCATCTGATAGAGAACGCTGGACTGGAACTTTATTCATTAAAGCGTGTGCGTATTGGTGATTTCAAGCTTCCTCAAGAT
CTAAGCATTGGAAAGCATCAAGTATTAGGAGAGGCTCAGATCAAAAAGTTGGTGGGCGTGGAAATGTATTAATGTTATCTGACCTGGAAAGAAAGCCTTATCTGAAGCCTGAAAAAGGAAAAGGCTAATCTATAAGCAAGATGATTGAGTCAACATAGTTGATATGCCGTGATTGTTTTTCTTACAGCTAGATTAGATTT
TGAAGTGAAAAACATGCAGTAATGATTTTGCCTTGCTTTTATAGGCTCATATTTGTAAGGCTGATCCTTCTAAAACCGAAGAATTACACTCCATCAACCACCACAAATATTGTACAGTTTTATCCAAGTGTATGCTTTTACTGTAGTGTTTGTGTTGTATTTTACATCTCTGTCTACACCTTTAAGTCGCTTACTGTGCT
GTACACGCATAGACTATTTCGTTGAACATCTTGTTAAGTTTCTTTTGTTAAATCAAACATGAGATGCCTTTTGTTCCTATTCTAGCACTTCCAGATTTTTCATGCCAGATTTTTCATGCCACTTTCTTATTTTTACTTGCTAGTGTCAATGCTCCATATTTGAAAAGTTGATCGATAATCTCTAATATTTCATTATTTGC
AATAGTCACATAGTACACTATATCAAGCTAATGAATGCAACA
>TRINITY_DN126589_c2_g1_i3 from sample A1 / Example unspliced isoform:AAAGAAAATATATAAAACAAAGGGCAGTGTGTAATGGCTCTGGCTTATTGCATCAAAGTAGTTTTGTTCACAACTACAGGAGTACTTCAACTAAATTATCTTTTCCGCTCATGCAACGATTATGGAATGTTGATGACAACAGGAGTGGATTGGATTGAGTGATTAATTTTGCAAGGGCCTTTACTTGTTCTTGTCATGGG
ATGTAAATAAGGCATTTCAAGAGGCGCTACTTGAGGCCCGAAATGGCAGCAGCTTCATCATCTTCATCTCTGGTGCTATTGTCTTCCTTGTTTGGAAGAAGAATAGGTGGAGGAGCAGAATGGGTGAGGCTGTTTTCACCTCCCACAAGCACACGCCCTCTGCCATCAAACATATCGTCGTCGATAATAATAAGAGCTTC
ATCTTCTTCTTTCAATATTTCGTTCGCGGGAGTGAAGACAAGCGGTGCCAAAACTCAAACAAGTAATAATGAGGGTAATAGCAAGGGCATGGTCATCCCGTGGATTGTAGAGGACGCAGAGGGAAATTTGAGCTTTCAAACTAAACGCCCGGATGAGTTAGATTATCGTTCATCTCCATCTCCATCTCCCTCCTCATCTT
CATCACCACCCTCTCCCAAAGTCTCCAAGCCGAAGCAGCAGCAGGGGCCCCCGCCTCCCAAGTATTCAAAAGCAGCTCGCAGATTTTACAACGAGGCTTTTAGAAAACCTGAGCGCCTTAGCAAGGTGTTGGCCAAAGCTGGGGTGGCTTCAAGGCGGGGGAGTGAAGAAGTTATTTTTGAAGGCCGCGTTACAGTAAAT
GGAGCAATATGCAAGACTCCTCAGACACTTGTTGATCCGTTGAAGGATGCTATCTATATTGATGGAAATTCCCTTCCAAAAAAGTTACCTCCAAAGTTGTATTTTGCTCTGAACAAACCGAAAGGGTACATCTGCTCAAGTGGGGAAGATGACTCGAAATCAGTTTTGTCACTACTTGACGAATATTTGAAAATATGGgt
ttatacgagtccctgactatttctttttggtcaattgcagaaatctgatgaatcatctgcagctgtgtatgctattttatctagatagttattgaagttaggcataaaatattgttagaatacatgtcttaaattttaatcactgtgctggattcccttattgtgatatttccttcagATTAAAAGAAATACAGGTGTGC
CGAAGCCCAGATTGTTTACAGTAGGCCGACTTGATGTTGCCACATCTGGATTGATCCTTGTCACAAATGATGGGGAATTTGCTCAAAAGGTGGCACATCCTTCATCAGGGCTCACAAAAGAGTATGTTGCAGCAGTAGAGGGGAAAGTAACTAAGAGACATTTGCAGGCCATTAGTGAAGGCACACTTGTCGAAGGAGTT
CATTGTACCCCTGTAGCTGTTGAACTTATATCTGCACAAGCAAATGAACGGAAGCAAAGGCTGCGGATTGTTGTTTGTGAGGGGAGAAACCATGAAGTTCGCCATCTGATAGAGAACGCTGGACTGGAACTTTATTCATTAAAGCGTGTGCGTATTGGTGATTTCAAGCTTCCTCAAGATCTAAGCATTGGAAAGCATCA
AGTATTAGGAGAGGCTCAGATCAAAAAGTTGGTGGGCGTGGAAATGTATTAATGTTATCTGACCTGGAAAGAAAGCCTTATCTGAAGCCTGAAAAAGGAAAAGGCTAATCTATAAGCAAGATGATTGAGTCAACATAGTTGATATGCCGTGATTGTTTTTCTTACAGCTAGATTAGATTTTGAAGTGAAAAACATGCAGT
AATGATTTTGCCTTGCTTTTATAGGCTCATATTTGTAAGGCTGATCCTTCTAAAACCGAAGAATTACACTCCATCAACCACCACAAATATTGTACAGTTTTATCCAAGTGTATGCTTTTACTGTAGTGTTTGTGTTGTATTTTACATCTCTGTCTACACCTTTAAGTCGCTTACTGTGCTGTACACGCATAGACTATTTC
GTTGAACATCTTGTTAAGTTTCTTTTGTTAAATCAAACATGAGATGCCTTTTGTTCCTATTCTAGCACTTCCAGATTTTTCATGCCAGATTTTTCATGCCACTTTCTTATTTTTACTTGCTAGTGTCAATGCTCCATATTTGAAAAGTTGATCGATAATCTCTAATATTTCATTATTTGCAATAGTCACATAGTACACTA
TATCAAGCTAATGAATGCAACA
Intron 2 GTATGTTGCA ... ACATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.72 | 17 | 22 | 13 |
| A2 | 53.85 | 21 | 23 | 26 |
| A3 | 49.25 | 17 | 18 | 15 |
| A4 | 58.33 | 10 | 15 | 13 |
| A5 | 53.49 | 10 | 8 | 15 |
| A6 | 57.85 | 55 | 54 | 97 |
| A7 | 57.68 | 62 | 66 | 103 |
| A8 | 53.14 | 71 | 59 | 102 |
| A9 | 52.17 | 77 | 64 | 104 |
| A10 | 61.04 | 45 | 67 | 74 |
>TRINITY_DN91303_c0_g2_i1 from sample A5 / Example spliced isoformTCAAAAGCAGCTCGCAGATTTTGCAACGAGGCTTTTAGAAAACCTGAGCGCCTTAGCAAGGTGTTGGCCAAAGCTGGGGTGGCTTCAAGGCGGGGGAGTGAAGAAGTTATTTTTGAAGGCCGCGTTACAGTAAATGGAGCAATATGCAAGACTCCTCAGACACTTGTTGATCCGTTGAAGGATGCTATCTATATTGATGG
AAATTCCCTTCCAAAAAAGTTACCTCCAAAGTTGTATTTTGCTCTGAACAAACCGAAAGGGTACATCTGCTCAAGTGGGGAAGATGACTCGAAATCAGTTTTGTCACTACTTGACGAATATTTGAAAATATGGATTAAAAGAAATACAGGTGTGCCGAAGCCCAGATTGTTTACAGTAGGCCGACTTGATGTTGCCACAT
CTGGATTGATCCTTGTCACAAATGATGGGGAATTTGCTCAAAAGGTGGCACATCCTTCATCAGGGCTCACAAAAGAGCCATTAGTGAAGGCACACTTGTCGAAGGAGTTCATTGTACCCCTGTAGCTGTTGAACTTATATCTGCACAAGCAAATGAACGGAAGCAAAGGCTGCGGATTGTTGTTTGTGAGGGGAGAAACC
ATGAAGTTCGCCATCTGATAGAGAACGCTGGACTGGAACTTTATTCATTAAAGCGTGTGCGTATTGGTGATTTCAAGCTTCCTCAAGATCTAAGCATTGGAAAGCATCAAGTATTAGGAGAGGCTCAGATCAAAAAGTTGGTGGGCGTGGAAATGTATTAATGTTATCTGACCTGGAAAGAAAGCCTTATCTGAAGCCTG
AAAAAGGAAAAGGCTAATCTATAAGCAAGATGATTGAGTCAACATAGTTGATATGCCGTGATTGTTTTTCTTACAGCTAGATTAGATTTTGAAGTGAAAAACATGCAGTAATGATTTTGCCTTGCTTTTATAGGCTCATATTTGTAAGGCTGATCCTTCTAAAACCGAAGAATTACACTCCATCAACCACCACAAATATT
GTACAGTTTTATCCAAGTGTATGCTTTTACTGTAGTGTTTGTGTTGTATTTTACATCTCTG
>TRINITY_DN91303_c0_g2_i3 from sample A5 / Example unspliced isoform:TCAAAAGCAGCTCGCAGATTTTGCAACGAGGCTTTTAGAAAACCTGAGCGCCTTAGCAAGGTGTTGGCCAAAGCTGGGGTGGCTTCAAGGCGGGGGAGTGAAGAAGTTATTTTTGAAGGCCGCGTTACAGTAAATGGAGCAATATGCAAGACTCCTCAGACACTTGTTGATCCGTTGAAGGATGCTATCTATATTGATGG
AAATTCCCTTCCAAAAAAGTTACCTCCAAAGTTGTATTTTGCTCTGAACAAACCGAAAGGGTACATCTGCTCAAGTGGGGAAGATGACTCGAAATCAGTTTTGTCACTACTTGACGAATATTTGAAAATATGGATTAAAAGAAATACAGGTGTGCCGAAGCCCAGATTGTTTACAGTAGGCCGACTTGATGTTGCCACAT
CTGGATTGATCCTTGTCACAAATGATGGGGAATTTGCTCAAAAGGTGGCACATCCTTCATCAGGGCTCACAAAAGAgtatgttgcagcagtagaggggaaagtaactaagagacatttgcagGCCATTAGTGAAGGCACACTTGTCGAAGGAGTTCATTGTACCCCTGTAGCTGTTGAACTTATATCTGCACAAGCAAAT
GAACGGAAGCAAAGGCTGCGGATTGTTGTTTGTGAGGGGAGAAACCATGAAGTTCGCCATCTGATAGAGAACGCTGGACTGGAACTTTATTCATTAAAGCGTGTGCGTATTGGTGATTTCAAGCTTCCTCAAGATCTAAGCATTGGAAAGCATCAAGTATTAGGAGAGGCTCAGATCAAAAAGTTGGTGGGCGTGGAAAT
GTATTAATGTTATCTGACCTGGAAAGAAAGCCTTATCTGAAGCCTGAAAAAGGAAAAGGCTAATCTATAAGCAAGATGATTGAGTCAACATAGTTGATATGCCGTGATTGTTTTTCTTACAGCTAGATTAGATTTTGAAGTGAAAAACATGCAGTAATGATTTTGCCTTGCTTTTATAGGCTCATATTTGTAAGGCTGAT
CCTTCTAAAACCGAAGAATTACACTCCATCAACCACCACAAATATTGTACAGTTTTATCCAAGTGTATGCTTTTACTGTAGTGTTTGTGTTGTATTTTACATCTCTG