sp|Q69XJ0|SPX1_ORYSJ ----> SPX domain-containing protein 1
Intron 1 GTAAACATGC ... GGGGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.93 | 182 | 43 | 42 |
| A2 | 21.51 | 197 | 69 | 39 |
| A3 | 19.2 | 162 | 46 | 31 |
| A4 | 19.4 | 160 | 40 | 37 |
| A5 | 19.44 | 145 | 49 | 21 |
| A6 | 19.3 | 861.3 | 246 | 166 |
| A7 | 20.44 | 1074 | 351 | 201 |
| A8 | 18.35 | 952 | 248 | 180 |
| A9 | 19.07 | 874 | 262 | 150 |
| A10 | 19.94 | 755 | 218 | 158 |
>TRINITY_DN47156_c0_g4_i4 from sample A7 / Example spliced isoformAAACAACTGGACGCCGTGACCAAGTTTATGATTCCGGTTTACTCTGTAACGTGTGCCCATAGTATTTGCAAGTACAGCTCTTTTCCTCTGCTGAAATCCCACTGGTTTCGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCTCAACTTTAAAT
CTTCGTTTCGCGCACTGTTTGACAGCTATTTTCTTTGGTGTTCTGGTTCCTTAGGCGGAAATCACTTCTTCTGGCCTTATGGAAGCGTTTCTAAGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTC
AGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCTTGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGAT
GACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGGGCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGTATGTCTGCTCTGGTCATCTTGAAT
TGGAAAATTTTGGCGTCTGGCTCAGGAATTGGGGTAATTCTTTATACTGTCGGGAGAGGAAACCTGTATGGTTCTTAAAGTTTCGAAGTGTTAGGCTTTTAGGATCGCCTTTAGGTTTTGAGAAATTGAGAAGTCGCGATTGCTGGGTGAATAAATTTGAAGAGATATGGGGCTTCGGGCTCTGGAATCGGTGTAATTCT
TGATGTTGCCGAGAGAGGAGACCTTTTTAGGTCATGTCGATTCGAAGTATTAGGCTGCTCGGCTCCCCTGTCTGAAAATTTAGAATTTAGGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGT
GAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAA
GTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGAT
TGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCACTTCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTG
CATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATT
GGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCA
>TRINITY_DN47156_c0_g4_i1 from sample A7 / Example unspliced isoform:AAACAACTGGACGCCGTGACCAAGTTTATGATTCCGGTTTACTCTGTAACGTGTGCCCATAGTATTTGCAAGTACAGCTCTTTTCCTCTGCTGAAATCCCACTGGTTTCGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCTCAACTTTAAAT
CTTCGTTTCGCGCACTGTTTGACAGCTATTTTCTTTGGTGTTCTGGTTCCTTAGGCGGAAATCACTTCTTCTGGCCTTATGGAAGCGTTTCTAAGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTC
AGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCTTGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGAT
GACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGGGCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGAGCTGCAGGACAGGAAAGAAAAGTT
GAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGgtaaacatgcatgattattaatatccatactcaattcaatcgtctataatttattgcagc
ctcgggcaatgggtatcttctcctggatgttagcttcaacttcaaattttcaaaaccctaactattaataccggggttgcagGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCAT
CAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATA
AATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCACTTCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAG
GCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTA
CATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCA
Intron 2 GTATGTCTGC ... TGTACAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.62 | 87 | 24 | 24 |
| A2 | 20.35 | 92 | 23 | 24 |
| A3 | 18.55 | 112 | 31 | 20 |
| A4 | 16.89 | 91 | 21 | 16 |
| A5 | 26.62 | 51 | 20 | 17 |
| A6 | 18.95 | 387 | 99 | 82 |
| A7 | 20.49 | 516 | 155 | 111 |
| A8 | 19.41 | 409 | 97 | 100 |
| A9 | 19.79 | 458 | 146 | 80 |
| A10 | 21.18 | 387 | 122 | 86 |
>TRINITY_DN47156_c0_g4_i2 from sample A7 / Example spliced isoformAAACAACTGGACGCCGTGACCAAGTTTATGATTCCGGTTTACTCTGTAACGTGTGCCCATAGTATTTGCAAGTACAGCTCTTTTCCTCTGCTGAAATCCCACTGGTTTCGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCTCAACTTTAAAT
CTTCGTTTCGCGCACTGTTTGACAGCTATTTTCTTTGGTGTTCTGGTTCCTTAGGCGGAAATCACTTCTTCTGGCCTTATGGAAGCGTTTCTAAGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTC
AGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCTTGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGAT
GACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGGGCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGAGCTGCAGGACAGGAAAGAAAAGTT
GAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCAT
TCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGA
GAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCACTTCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACAC
GAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTG
TAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGC
AATGACATTTTCAAAATGGTGTTTCCA
>TRINITY_DN47156_c0_g4_i5 from sample A7 / Example unspliced isoform:AAACAACTGGACGCCGTGACCAAGTTTATGATTCCGGTTTACTCTGTAACGTGTGCCCATAGTATTTGCAAGTACAGCTCTTTTCCTCTGCTGAAATCCCACTGGTTTCGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCTCAACTTTAAAT
CTTCGTTTCGCGCACTGTTTGACAGCTATTTTCTTTGGTGTTCTGGTTCCTTAGGCGGAAATCACTTCTTCTGGCCTTATGGAAGCGTTTCTAAGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTC
AGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCTTGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGAT
GACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGGGCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGgtatgtctgctctggtcatcttgaat
tggaaaattttggcgtctggctcaggaattggggtaattctttatactgtcgggagaggaaacctgtatggttcttaaagtttcgaagtgttaggcttttaggatcgcctttaggttttgagaaattgagaagtcgcgattgctgggtgaataaatttgaagagatatggggcttcgggctctggaatcggtgtaattct
tgatgttgccgagagaggagacctttttaggtcatgtcgattcgaagtattaggctgctcggctcccctgtctgaaaatttagaatttaggtaggttttctattttttttccttttttggaaaatgtttaacataggcagttgatagcttctagataaaactagtgcttgcgaatagctaatttttgagaaattgagaag
tcgcgatttctatgtgattatatttgtagatatcttattggggtaattataagaccagggttagttatgtcctgtaggctgtagcaaatcactgttcttcttttcagtccttagcaagatcgaaccctgctgtggtccatgctgttacaatagacttgcaatcataagatgaaattactgttctctccgctcggattcgc
acgtttggcttaatgatttggtttaaatgcactgtacaacagGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAA
CTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTC
CGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCACTTCGC
ACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAA
GTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTA
TCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCA
Intron 3 GTATGTCTGC ... TAGAATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.05 | 87 | 14 | 18 |
| A2 | 13.39 | 92 | 12.3 | 15 |
| A3 | 11.1 | 112 | 16 | 14.5 |
| A4 | 11.21 | 91 | 12.5 | 12 |
| A5 | 18.39 | 51 | 11 | 11.8 |
| A6 | 13.03 | 387 | 50 | 59.5 |
| A7 | 14.64 | 516 | 79.5 | 90.5 |
| A8 | 17.32 | 409 | 49.8 | 88.3 |
| A9 | 10.56 | 458 | 75.3 | 55.8 |
| A10 | 16.28 | 387 | 61.5 | 77 |
>TRINITY_DN47156_c0_g4_i2 from sample A7 / Example spliced isoformAAACAACTGGACGCCGTGACCAAGTTTATGATTCCGGTTTACTCTGTAACGTGTGCCCATAGTATTTGCAAGTACAGCTCTTTTCCTCTGCTGAAATCCCACTGGTTTCGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCTCAACTTTAAAT
CTTCGTTTCGCGCACTGTTTGACAGCTATTTTCTTTGGTGTTCTGGTTCCTTAGGCGGAAATCACTTCTTCTGGCCTTATGGAAGCGTTTCTAAGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTC
AGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCTTGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGAT
GACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGGGCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGAGCTGCAGGACAGGAAAGAAAAGTT
GAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCAT
TCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGA
GAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCACTTCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACAC
GAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTG
TAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGC
AATGACATTTTCAAAATGGTGTTTCCA
>TRINITY_DN47156_c0_g4_i4 from sample A7 / Example unspliced isoform:AAACAACTGGACGCCGTGACCAAGTTTATGATTCCGGTTTACTCTGTAACGTGTGCCCATAGTATTTGCAAGTACAGCTCTTTTCCTCTGCTGAAATCCCACTGGTTTCGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCTCAACTTTAAAT
CTTCGTTTCGCGCACTGTTTGACAGCTATTTTCTTTGGTGTTCTGGTTCCTTAGGCGGAAATCACTTCTTCTGGCCTTATGGAAGCGTTTCTAAGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTC
AGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCTTGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGAT
GACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGGGCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGgtatgtctgctctggtcatcttgaat
tggaaaattttggcgtctggctcaggaattggggtaattctttatactgtcgggagaggaaacctgtatggttcttaaagtttcgaagtgttaggcttttaggatcgcctttaggttttgagaaattgagaagtcgcgattgctgggtgaataaatttgaagagatatggggcttcgggctctggaatcggtgtaattct
tgatgttgccgagagaggagacctttttaggtcatgtcgattcgaagtattaggctgctcggctcccctgtctgaaaatttagaatttagGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGT
GAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAA
GTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGAT
TGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCACTTCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTG
CATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATT
GGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCA
Intron 4 GCAGGTTTTC ... TGTACAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.55 | 20 | 5 | 24 |
| A2 | 54.55 | 20 | 4 | 24 |
| A3 | 51.28 | 19 | 4 | 20 |
| A4 | 50 | 16 | 2 | 16 |
| A5 | 54.84 | 14 | 1 | 17 |
| A6 | 52.56 | 74 | 4 | 82 |
| A7 | 50.23 | 110 | 13 | 111 |
| A8 | 48.08 | 108 | 20 | 100 |
| A9 | 52.63 | 72 | 4 | 80 |
| A10 | 48.04 | 93 | 12 | 86 |
>TRINITY_DN43756_c0_g1_i2 from sample A9 / Example spliced isoformCTTTGATATATACTTTGATATATCCTTCTCGACAAGTTGAAGCCGAGATCTCAGTTTGGCATATTCCTAGATATATTCCAAGGAATATTACCACGATACTGTTCGGCCTGTCTCCACACAAAGTACGACCTAAACCATTTTCGCTTTAAATTCTTTCTGCCAAACAACTGGACCCCGTGACCAAGTTTATGATTCCGGTT
TACTCTGTAACGTGAGCCCATAGTATTTGCAGGTACAGCTCTTTACCCCTGCTGAAATCCCACTGGTTTTGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCCCAACTTTAAATCTTCGTTTCACGCACTGTTTGACAGCTATTTTCTTTGGT
ATTCTGGTTCCGTAGGCAGAAATCACTTCTTCTGGCCGTATGGAAGCGTTTCTGCGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTCAGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCT
TGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGAGGAACTGTTGAAATAAGTGCTGCTTCAGATGACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGG
GCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGTATGTCTGCTCTGGTCATCTTGAATTGGAAAATTTTGGCGTCTGGCTCAGGAATTGGGGTAATT
CTTTATACTGTCGGGAGAGGAAACCTGTATGGTTCTTAAAGTTTCGAAGTGTTAGGCTTTTAGGATCGCCTTTAGGTTTTGAGAAATTGAGAAGTCGCGATTGCTGGGTGAATAAATTTGAAGAGATATGGGGCTTCGGGCTCTGGAATCGGTGTAATTCTTGATGTTGCCGAGAGAGGAGACCTTTTTAGGTCATGTCG
ATTCGAAGTATTAGGCTGCTCGGCTCCCCTGTCTGAAAATTTAGAATTTAGGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAG
CGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTAC
CTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCT
GCGCTCCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGT
TAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCT
GATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCACACTCCATTTATATAGGTAGATAAATAGACAGATGATGATGTGCCTTTTGAAACTTCTTAATCAAGGTACAATTTTTAAAATTTTCATCAATAATA
TAAATTTTAATTAATTTTTATGATGCTTAAAATAATATATTAAAATAATATAAACAAAAGTCCCAAC
>TRINITY_DN43756_c0_g1_i1 from sample A9 / Example unspliced isoform:CTTTGATATATACTTTGATATATCCTTCTCGACAAGTTGAAGCCGAGATCTCAGTTTGGCATATTCCTAGATATATTCCAAGGAATATTACCACGATACTGTTCGGCCTGTCTCCACACAAAGTACGACCTAAACCATTTTCGCTTTAAATTCTTTCTGCCAAACAACTGGACCCCGTGACCAAGTTTATGATTCCGGTT
TACTCTGTAACGTGAGCCCATAGTATTTGCAGGTACAGCTCTTTACCCCTGCTGAAATCCCACTGGTTTTGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCCCAACTTTAAATCTTCGTTTCACGCACTGTTTGACAGCTATTTTCTTTGGT
ATTCTGGTTCCGTAGGCAGAAATCACTTCTTCTGGCCGTATGGAAGCGTTTCTGCGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTCAGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCT
TGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGAGGAACTGTTGAAATAAGTGCTGCTTCAGATGACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGG
GCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGTATGTCTGCTCTGGTCATCTTGAATTGGAAAATTTTGGCGTCTGGCTCAGGAATTGGGGTAATT
CTTTATACTGTCGGGAGAGGAAACCTGTATGGTTCTTAAAGTTTCGAAGTGTTAGGCTTTTAGGATCGCCTTTAGGTTTTGAGAAATTGAGAAGTCGCGATTGCTGGGTGAATAAATTTGAAGAGATATGGGGCTTCGGGCTCTGGAATCGGTGTAATTCTTGATGTTGCCGAGAGAGGAGACCTTTTTAGGTCATGTCG
ATTCGAAGTATTAGGCTGCTCGGCTCCCCTGTCTGAAAATTTAGAATTTAGgcaggttttctattttttttccttttttggacaatgtttaacataggcagtgatagcttctagataaaactagtgcttgcgaatagctaatttttgagaaattgagaagtcgcgatttctatgtgattatatttgtagatatcttattg
gggtaattataagaccagggttagttatgtcctgtaggctgtagcaaatcactgttcttcttttcagtccttagcaagatcgaaccctgctgtggtccatgctgttacaatagacttgcaatcataagatgaaattgctgttctctccgctcggattcgcacatttggcttaatgatttggtttaaatgcactgtacaac
agGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAG
AGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGC
TGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCGCTCCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTG
TCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTT
CTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATT
ACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCACACTCCATTTATATAGGTAGATAAATAGACAGATGATGATGTGCCTTTTGAAACTTCTTAATCAAGGTACAATTTTTAAAATTTTCATCAATAATATAAATTTTAATTAATTTTTATGATGCTTAAAATAATATATTAAAATAAT
ATAAACAAAAGTCCCAAC
Intron 5 GTATGTCTGC ... TGTACAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.97 | 87 | 25 | 24 |
| A2 | 20.35 | 92 | 23 | 24 |
| A3 | 18.84 | 112 | 32 | 20 |
| A4 | 16.89 | 91 | 21 | 16 |
| A5 | 26.62 | 51 | 20 | 17 |
| A6 | 19.04 | 387 | 100 | 82 |
| A7 | 20.55 | 516 | 156 | 111 |
| A8 | 19.41 | 409 | 97 | 100 |
| A9 | 20.21 | 458 | 152 | 80 |
| A10 | 21.34 | 387 | 124 | 86 |
>TRINITY_DN43756_c0_g1_i3 from sample A9 / Example spliced isoformCTTTGATATATACTTTGATATATCCTTCTCGACAAGTTGAAGCCGAGATCTCAGTTTGGCATATTCCTAGATATATTCCAAGGAATATTACCACGATACTGTTCGGCCTGTCTCCACACAAAGTACGACCTAAACCATTTTCGCTTTAAATTCTTTCTGCCAAACAACTGGACCCCGTGACCAAGTTTATGATTCCGGTT
TACTCTGTAACGTGAGCCCATAGTATTTGCAGGTACAGCTCTTTACCCCTGCTGAAATCCCACTGGTTTTGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCCCAACTTTAAATCTTCGTTTCACGCACTGTTTGACAGCTATTTTCTTTGGT
ATTCTGGTTCCGTAGGCAGAAATCACTTCTTCTGGCCGTATGGAAGCGTTTCTGCGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTCAGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCT
TGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGATGACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGG
GCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCA
AAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTG
ACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAG
GAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCGCTCCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCC
CAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGA
GTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCACACTCCATTTAT
ATAGGTAGATAAATAGACAGATGATGATGTGCCTTTTGAAACTTCTTAATCAAGGTACAATTTTTAAAATTTTCATCAATAATATAAATTTTAATTAATTTTTATGATGCTTAAAATAATATATTAAAATAATATAAACAAAAGTCCCAAC
>TRINITY_DN43756_c0_g1_i1 from sample A9 / Example unspliced isoform:CTTTGATATATACTTTGATATATCCTTCTCGACAAGTTGAAGCCGAGATCTCAGTTTGGCATATTCCTAGATATATTCCAAGGAATATTACCACGATACTGTTCGGCCTGTCTCCACACAAAGTACGACCTAAACCATTTTCGCTTTAAATTCTTTCTGCCAAACAACTGGACCCCGTGACCAAGTTTATGATTCCGGTT
TACTCTGTAACGTGAGCCCATAGTATTTGCAGGTACAGCTCTTTACCCCTGCTGAAATCCCACTGGTTTTGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCCCAACTTTAAATCTTCGTTTCACGCACTGTTTGACAGCTATTTTCTTTGGT
ATTCTGGTTCCGTAGGCAGAAATCACTTCTTCTGGCCGTATGGAAGCGTTTCTGCGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTCAGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCT
TGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGAGGAACTGTTGAAATAAGTGCTGCTTCAGATGACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGG
GCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGgtatgtctgctctggtcatcttgaattggaaaattttggcgtctggctcaggaattggggtaatt
ctttatactgtcgggagaggaaacctgtatggttcttaaagtttcgaagtgttaggcttttaggatcgcctttaggttttgagaaattgagaagtcgcgattgctgggtgaataaatttgaagagatatggggcttcgggctctggaatcggtgtaattcttgatgttgccgagagaggagacctttttaggtcatgtcg
attcgaagtattaggctgctcggctcccctgtctgaaaatttagaatttaggcaggttttctattttttttccttttttggacaatgtttaacataggcagtgatagcttctagataaaactagtgcttgcgaatagctaatttttgagaaattgagaagtcgcgatttctatgtgattatatttgtagatatcttattg
gggtaattataagaccagggttagttatgtcctgtaggctgtagcaaatcactgttcttcttttcagtccttagcaagatcgaaccctgctgtggtccatgctgttacaatagacttgcaatcataagatgaaattgctgttctctccgctcggattcgcacatttggcttaatgatttggtttaaatgcactgtacaac
agGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAG
AGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGC
TGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCGCTCCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTG
TCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTT
CTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATT
ACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCACACTCCATTTATATAGGTAGATAAATAGACAGATGATGATGTGCCTTTTGAAACTTCTTAATCAAGGTACAATTTTTAAAATTTTCATCAATAATATAAATTTTAATTAATTTTTATGATGCTTAAAATAATATATTAAAATAAT
ATAAACAAAAGTCCCAAC
Intron 6 GTAGGTTTTC ... TGTACAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.55 | 20 | 5 | 24 |
| A2 | 54.55 | 20 | 4 | 24 |
| A3 | 51.28 | 19 | 4 | 20 |
| A4 | 50 | 16 | 2 | 16 |
| A5 | 54.84 | 14 | 1 | 17 |
| A6 | 52.56 | 74 | 4 | 82 |
| A7 | 50.23 | 110 | 13 | 111 |
| A8 | 48.08 | 108 | 20 | 100 |
| A9 | 52.63 | 72 | 4 | 80 |
| A10 | 48.04 | 93 | 12 | 86 |
>TRINITY_DN47156_c0_g4_i4 from sample A7 / Example spliced isoformAAACAACTGGACGCCGTGACCAAGTTTATGATTCCGGTTTACTCTGTAACGTGTGCCCATAGTATTTGCAAGTACAGCTCTTTTCCTCTGCTGAAATCCCACTGGTTTCGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCTCAACTTTAAAT
CTTCGTTTCGCGCACTGTTTGACAGCTATTTTCTTTGGTGTTCTGGTTCCTTAGGCGGAAATCACTTCTTCTGGCCTTATGGAAGCGTTTCTAAGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTC
AGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCTTGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGAT
GACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGGGCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGTATGTCTGCTCTGGTCATCTTGAAT
TGGAAAATTTTGGCGTCTGGCTCAGGAATTGGGGTAATTCTTTATACTGTCGGGAGAGGAAACCTGTATGGTTCTTAAAGTTTCGAAGTGTTAGGCTTTTAGGATCGCCTTTAGGTTTTGAGAAATTGAGAAGTCGCGATTGCTGGGTGAATAAATTTGAAGAGATATGGGGCTTCGGGCTCTGGAATCGGTGTAATTCT
TGATGTTGCCGAGAGAGGAGACCTTTTTAGGTCATGTCGATTCGAAGTATTAGGCTGCTCGGCTCCCCTGTCTGAAAATTTAGAATTTAGGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGT
GAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAACTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAA
GTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTCCGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGAT
TGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCACTTCGCACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTG
CATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAAGTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATT
GGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTATCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCA
>TRINITY_DN47156_c0_g4_i5 from sample A7 / Example unspliced isoform:AAACAACTGGACGCCGTGACCAAGTTTATGATTCCGGTTTACTCTGTAACGTGTGCCCATAGTATTTGCAAGTACAGCTCTTTTCCTCTGCTGAAATCCCACTGGTTTCGGGGTTTCGACACCTTACACCGACTTGAACCCGCGACATTACAGCGTCCTGTTCTTGTTTGGACTTCTGATATTGTAGCTCAACTTTAAAT
CTTCGTTTCGCGCACTGTTTGACAGCTATTTTCTTTGGTGTTCTGGTTCCTTAGGCGGAAATCACTTCTTCTGGCCTTATGGAAGCGTTTCTAAGGCCCCGAGGCCTACAGTATTAATGTATTTTTGGAGAGTATAATTCTTTTTCGAGAAGAAAATTTTCGAACCGGGATCATGAAGTTTGGCAAAAGATTGAAGAGTC
AGATCGAGGAAGCATTGCCAGAATGGCGGGATAAGTTCTTGTCTTACAAATACTTGAAGAAGCAAGTCAATTCTATATCGACTGCAAGGGAAGATTCGTCTTCCCTTGGCAGCGATGAGATCCTGGGCGGCTTCGATGAAGTTCCCAACAAAAGGCAAAAGATCTCTAGGGGAACTGTTGAAGTAAGTGCTGCTTCAGAT
GACAATCTAAGCGCCGTTGTATCTCAACAGGGCTCCGGGGCTCTAGATTTCGATTGCAATAAACGCAAAATGACTGCGGAGCAGTCGTATTTTGTTCATTTGCTGAATGCTGAGATTGACAAGTTTAATGCCTTCTTTATGGAGCAAGAAGAAGAGTACATCATCCGTCAAAAGGTATGTCTGCTCTGGTCATCTTGAAT
TGGAAAATTTTGGCGTCTGGCTCAGGAATTGGGGTAATTCTTTATACTGTCGGGAGAGGAAACCTGTATGGTTCTTAAAGTTTCGAAGTGTTAGGCTTTTAGGATCGCCTTTAGGTTTTGAGAAATTGAGAAGTCGCGATTGCTGGGTGAATAAATTTGAAGAGATATGGGGCTTCGGGCTCTGGAATCGGTGTAATTCT
TGATGTTGCCGAGAGAGGAGACCTTTTTAGGTCATGTCGATTCGAAGTATTAGGCTGCTCGGCTCCCCTGTCTGAAAATTTAGAATTTAGgtaggttttctattttttttccttttttggaaaatgtttaacataggcagttgatagcttctagataaaactagtgcttgcgaatagctaatttttgagaaattgagaag
tcgcgatttctatgtgattatatttgtagatatcttattggggtaattataagaccagggttagttatgtcctgtaggctgtagcaaatcactgttcttcttttcagtccttagcaagatcgaaccctgctgtggtccatgctgttacaatagacttgcaatcataagatgaaattactgttctctccgctcggattcgc
acgtttggcttaatgatttggtttaaatgcactgtacaacagGAGCTGCAGGACAGGAAAGAAAAGTTGAAGAGCAAAAGTACACTGAACGGGGCAGTTTTTTCCCAAAACGAGTACAACGAGGAGATGATCGAATTGAGGAAAGACATTGTGAATTTTTATGGCGAAATGGTTCTGCTTGAGAATTACAGCGCTTTTAA
CTATACAGGGCTAGCGAAGATTTTGAAGAAATATGAGAAGAGAACAGGCGGGCTACTGCGCCACCCATTCGTCCAGAAGATTCTGGAACAACCCTTTTTCACCACTGACCAACTCTCTAAGCTCATCAGAGAATGCGAAAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCGTTCTTCAATTACCTGCAGGTC
CGTCCAGCAATGGAAACCATGCGGAAACATCTTCTTCTGCTGGTAAAAGCGATTTGCAGAGGCTACGAGAGGTGGCGGCGGCAACGACCAAAGCAGAATTCGAGGAGGAGAATTCATTGTTGAATAAATGCAGGGGAGGTGGGGATGGGGATTGGGAAGGTAGGGAGAGCATATACAGAAGCACCATGGCTGCACTTCGC
ACCATGAAAGAAATACGCAGAGGAAGCTCTACATACAGTGTCTTCTCCTTGCCCCCTTTGGATGACACGAAAACTATACCGCTCTGTTCACTCATCCCCATCTGCCCCAAAAACTAGAACTGCCAGGCTATAAAGCTAAAACACTATTCTTGCATACAACAAAACACTCAACCATAGAGATTAATTAGAGTTAATTTTAA
GTCGGTCTACTAGTGGCATCTCTTAAATTCTCCCAGTCTTCTGCAATTTGCCAAATATCTGAATTTTGTAAATCGTTGAAGATTTTTCTTTTAAATTTGAGAGTTGAGTTTAATGTGTATGCTTTACATTCCTCTTGTTACCATTCCTGATTGGTACTCAATTTTAGCAAATATTTACTCATGGAGTATCTGATCTTGTA
TCTCTGCCCACACATGTTAATCTGTCTTTTTTTCTGCATTACCTGTAAAGATTGATTCTTTCCTTTGCAATGACATTTTCAAAATGGTGTTTCCA