sp|Q5G1S8|PP241_ARATH ----> Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
Intron 1 GTAAGTGGCT ... TATATGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 6 | 5 |
| A2 | 100 | 0 | 7 | 4 |
| A3 | 50 | 5 | 2 | 8 |
| A4 | 58.62 | 6 | 11 | 6 |
| A5 | 65.52 | 5 | 11 | 8 |
| A6 | 80 | 1 | 5 | 3 |
| A7 | 68.89 | 7 | 19 | 12 |
| A8 | 100 | 0 | 12 | 3 |
| A9 | 66.67 | 3 | 8 | 4 |
| A10 | 55.56 | 12 | 14 | 16 |
>TRINITY_DN40229_c0_g1_i4 from sample A10 / Example spliced isoformGAACTGGGGCGCTGATTTCCAGAGGCTTTCTGCAGGTGCAGCACTGGTTGGACTTACATTGTGGATGGATCATATGCAGGATGCTTCGCTGCAGGGTATCCCAGAATCTCCAAAGTTGGTTACATTAGTAACTGGAAGCACCATATACAGTAATGCCATTTCTGTGAATAAGACTTTGAAGACTTACCTATGGGAGATGG
GTTCACCTTTTCTACCTTCTAATACTCAGTCTGGCATTCTTATTGCAAAAGGTCATTCACTCCGTATGTGGCTTAAGGATTCACCTTTCTGTATGGATCTTGAACTCAAGGATTGCTCATCTCTACCAGACTGTAACTCAATGCAGATTTACAAAGGTTCTTTTATGCGGGCTGAACTAGTCCCTGCATTTATGCAGATA
CGCGAGAGCATGGGGGAAGTAAGACCAAAAAAATTCTCAAGGTTAGCCCTCATGTCCAGTGAGAGACGGGAAAAAGCAATTGCTGCTGATTTAGAGGGTAGAAAAGAAGTTCTAGAAAAAAGGAAGGGTTTTCTACAATCGAAGAGAAGAAAGAGATAACTGTTGCCACTACAAACCAAGAGTTTTCGACAGGACATCCT
CGAGTAGATGTGGAACTCCAGTGACTATCATATGGAACCTTTGGTACTGCCTCATAGCAATATGTGGTTAATATTTTCATTATCCTTATCCGGAGTCTGAATTTGGAAATTGATGTCACTACTTTCAGATGTCAAGTACAATGATCTATAAGTCAACTTCCCAAGAATTAATGCCAGCCTGCCAGGTGCAGCACTGGTTG
GACATACAATGTGGATGGATCATATGCAGGAATTATTCAACCTTGTGCTAACCAAAATTAATTTGCTCTATAGGATGCTTCTTTGCAGGGTGTCCTAGAATCTCCAAAGCTGGTTGCATTGATTTGCAAAGGCTCTTCTATGCAGGCTGAACTGGTCCCTGCATTTAGACAGATACACGAGAGTGTGGGTAAATAAGAGC
AAAAATCATCTTAAGGTGGTTAGCAAGGAGTTTGATTGCAAGATCTAGTCTTCATTGATATGACTTCGCTAACAGGCTTAGATAGGACATCTTCAAGAAGATGTGGAGCTCTAGTGACTAGCATATGAAACCTTTGGTATCGCTTCATAGTCAGCATTTAGTTAACCTTCATTATCCTTGTCTGGAGTTCGAATTCAGAA
ATGGATATCACCACTTTAGACTCTGCAATAATTCTGACATAGATACATAGTTATGCATCTCTATCTAGTCTACAAGACCAGAGTTTGTTAAGGTAGTAGTTATTCCTTTTTGAGTGGAAATTATCTTTACCCTTTTTATAACACGTTTTCAGAAGTAATTGGGAATATGCAAAAGTGGGCAAGCTAGTTAGATGGATATA
TTCACAGAATAAAGACATGTAATCTATGTTAGATGATCATTATATTCCACTATTTTTTGGTTTCCTGCAGTGAATGATGGAGGTTTTACATATTCAAGAATCTGCTAATGAAGGGTAGTACAAAGAAATGCTTTGTCGGTACAGTTTATAACCAAGAAACTGACTCTGGTGGTTCCAGTATATACATCTGTCAGTAATCA
ATTGAATGGATGCTATCTGGTATCAATCAGGGTTCATAAAAAGTTATAAAATTCTGAGATGTTGACTTGCAGAGTTCGTATTGCAAAATGTCTGCAAAACGTCTGAGAATGGTAGCACTAATTCAGTGTTAAAGTACTTCGTA
>TRINITY_DN40229_c0_g1_i5 from sample A10 / Example unspliced isoform:GAACTGGGGCGCTGATTTCCAGAGGCTTTCTGCAGGTGCAGCACTGGTTGGACTTACATTGTGGATGGATCATATGCAGGATGCTTCGCTGCAGGGTATCCCAGAATCTCCAAAGTTGGTTACATTAGTAACTGGAAGCACCATATACAGTAATGCCATTTCTGTGAATAAGACTTTGAAGACTTACCTATGGGAGATGG
GTTCACCTTTTCTACCTTCTAATACTCAGTCTGGCATTCTTATTGCAAAAGGTCATTCACTCCGTATGTGGCTTAAGGATTCACCTTTCTGTATGGATCTTGAACTCAAGGATTGCTCATCTCTACCAGACTGTAACTCAATGCAGATTTACAAAGGTTCTTTTATGCGGGCTGAACTAGTCCCTGCATTTATGCAGATA
CGCGAGAGCATGGGGGAAGTAAGACCAAAAAAATTCTCAAGGTTAGCCCTCATGTCCAGTGAGAGACGGGAAAAAGCAATTGCTGCTGATTTAGAGGGTAGAAAAGAAGTTCTAGAAAAAAGGAAGGGTTTTCTACAATCGAAGAGAAGAAAGAGATAACTGTTGCCACTACAAAgtaagtggctatagatgtcaaacaa
ggatgctgaggcatttcttgatcttgaggttggtttgttaatatcttctatgtgaacactgcacacttgccagatggttagcaaggagttgacatccagtctttattatatgacagCCAAGAGTTTTCGACAGGACATCCTCGAGTAGATGTGGAACTCCAGTGACTATCATATGGAACCTTTGGTACTGCCTCATAGCA
ATATGTGGTTAATATTTTCATTATCCTTATCCGGAGTCTGAATTTGGAAATTGATGTCACTACTTTCAGATGTCAAGTACAATGATCTATAAGTCAACTTCCCAAGAATTAATGCCAGCCTGCCAGGTGCAGCACTGGTTGGACATACAATGTGGATGGATCATATGCAGGTGCTTTCATCCTATATTCCTAGCCTAGAT
GTTGAACTGAAGATCCATTTCTGCCTTTAATGTGAATCATTTTCTTGGTTGTTTTCTTCTAGGAAACAAGGGTTTATTAATTACAAAACATGTTATAAATATTTATTGTAATTCTAACCGTGATGCGTTCTGTGCACTTGCTTTCAGGAATTATTCAACCTTGTGCT
Intron 2 GTGCTTTCAT ... TTGCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 1 | 2 | 0 |
| A2 | 100 | 0 | 3 | 3 |
| A3 | 83.34 | 0.5 | 2 | 4 |
| A4 | 50 | 4 | 4 | 2 |
| A5 | 100 | 0 | 5 | 0 |
| A6 | 83.34 | 1 | 4 | 0 |
| A7 | 100 | 0 | 2 | 0 |
| A8 | 70 | 3 | 7 | 0 |
| A9 | 66.67 | 1 | 2 | 0 |
| A10 | 59.21 | 9 | 13 | 0 |
>TRINITY_DN40229_c0_g1_i4 from sample A10 / Example spliced isoformGAACTGGGGCGCTGATTTCCAGAGGCTTTCTGCAGGTGCAGCACTGGTTGGACTTACATTGTGGATGGATCATATGCAGGATGCTTCGCTGCAGGGTATCCCAGAATCTCCAAAGTTGGTTACATTAGTAACTGGAAGCACCATATACAGTAATGCCATTTCTGTGAATAAGACTTTGAAGACTTACCTATGGGAGATGG
GTTCACCTTTTCTACCTTCTAATACTCAGTCTGGCATTCTTATTGCAAAAGGTCATTCACTCCGTATGTGGCTTAAGGATTCACCTTTCTGTATGGATCTTGAACTCAAGGATTGCTCATCTCTACCAGACTGTAACTCAATGCAGATTTACAAAGGTTCTTTTATGCGGGCTGAACTAGTCCCTGCATTTATGCAGATA
CGCGAGAGCATGGGGGAAGTAAGACCAAAAAAATTCTCAAGGTTAGCCCTCATGTCCAGTGAGAGACGGGAAAAAGCAATTGCTGCTGATTTAGAGGGTAGAAAAGAAGTTCTAGAAAAAAGGAAGGGTTTTCTACAATCGAAGAGAAGAAAGAGATAACTGTTGCCACTACAAACCAAGAGTTTTCGACAGGACATCCT
CGAGTAGATGTGGAACTCCAGTGACTATCATATGGAACCTTTGGTACTGCCTCATAGCAATATGTGGTTAATATTTTCATTATCCTTATCCGGAGTCTGAATTTGGAAATTGATGTCACTACTTTCAGATGTCAAGTACAATGATCTATAAGTCAACTTCCCAAGAATTAATGCCAGCCTGCCAGGTGCAGCACTGGTTG
GACATACAATGTGGATGGATCATATGCAGGAATTATTCAACCTTGTGCTAACCAAAATTAATTTGCTCTATAGGATGCTTCTTTGCAGGGTGTCCTAGAATCTCCAAAGCTGGTTGCATTGATTTGCAAAGGCTCTTCTATGCAGGCTGAACTGGTCCCTGCATTTAGACAGATACACGAGAGTGTGGGTAAATAAGAGC
AAAAATCATCTTAAGGTGGTTAGCAAGGAGTTTGATTGCAAGATCTAGTCTTCATTGATATGACTTCGCTAACAGGCTTAGATAGGACATCTTCAAGAAGATGTGGAGCTCTAGTGACTAGCATATGAAACCTTTGGTATCGCTTCATAGTCAGCATTTAGTTAACCTTCATTATCCTTGTCTGGAGTTCGAATTCAGAA
ATGGATATCACCACTTTAGACTCTGCAATAATTCTGACATAGATACATAGTTATGCATCTCTATCTAGTCTACAAGACCAGAGTTTGTTAAGGTAGTAGTTATTCCTTTTTGAGTGGAAATTATCTTTACCCTTTTTATAACACGTTTTCAGAAGTAATTGGGAATATGCAAAAGTGGGCAAGCTAGTTAGATGGATATA
TTCACAGAATAAAGACATGTAATCTATGTTAGATGATCATTATATTCCACTATTTTTTGGTTTCCTGCAGTGAATGATGGAGGTTTTACATATTCAAGAATCTGCTAATGAAGGGTAGTACAAAGAAATGCTTTGTCGGTACAGTTTATAACCAAGAAACTGACTCTGGTGGTTCCAGTATATACATCTGTCAGTAATCA
ATTGAATGGATGCTATCTGGTATCAATCAGGGTTCATAAAAAGTTATAAAATTCTGAGATGTTGACTTGCAGAGTTCGTATTGCAAAATGTCTGCAAAACGTCTGAGAATGGTAGCACTAATTCAGTGTTAAAGTACTTCGTA
>TRINITY_DN40229_c0_g1_i5 from sample A10 / Example unspliced isoform:GAACTGGGGCGCTGATTTCCAGAGGCTTTCTGCAGGTGCAGCACTGGTTGGACTTACATTGTGGATGGATCATATGCAGGATGCTTCGCTGCAGGGTATCCCAGAATCTCCAAAGTTGGTTACATTAGTAACTGGAAGCACCATATACAGTAATGCCATTTCTGTGAATAAGACTTTGAAGACTTACCTATGGGAGATGG
GTTCACCTTTTCTACCTTCTAATACTCAGTCTGGCATTCTTATTGCAAAAGGTCATTCACTCCGTATGTGGCTTAAGGATTCACCTTTCTGTATGGATCTTGAACTCAAGGATTGCTCATCTCTACCAGACTGTAACTCAATGCAGATTTACAAAGGTTCTTTTATGCGGGCTGAACTAGTCCCTGCATTTATGCAGATA
CGCGAGAGCATGGGGGAAGTAAGACCAAAAAAATTCTCAAGGTTAGCCCTCATGTCCAGTGAGAGACGGGAAAAAGCAATTGCTGCTGATTTAGAGGGTAGAAAAGAAGTTCTAGAAAAAAGGAAGGGTTTTCTACAATCGAAGAGAAGAAAGAGATAACTGTTGCCACTACAAAGTAAGTGGCTATAGATGTCAAACAA
GGATGCTGAGGCATTTCTTGATCTTGAGGTTGGTTTGTTAATATCTTCTATGTGAACACTGCACACTTGCCAGATGGTTAGCAAGGAGTTGACATCCAGTCTTTATTATATGACAGCCAAGAGTTTTCGACAGGACATCCTCGAGTAGATGTGGAACTCCAGTGACTATCATATGGAACCTTTGGTACTGCCTCATAGCA
ATATGTGGTTAATATTTTCATTATCCTTATCCGGAGTCTGAATTTGGAAATTGATGTCACTACTTTCAGATGTCAAGTACAATGATCTATAAGTCAACTTCCCAAGAATTAATGCCAGCCTGCCAGGTGCAGCACTGGTTGGACATACAATGTGGATGGATCATATGCAGgtgctttcatcctatattcctagcctagat
gttgaactgaagatccatttctgcctttaatgtgaatcattttcttggttgttttcttctaggaaacaagggtttattaattacaaaacatgttataaatatttattgtaattctaaccgtgatgcgttctgtgcacttgctttcagGAATTATTCAACCTTGTGCT
Intron 3 GTAATTGGAA ... TCTCTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.71 | 1 | 1 | 11 |
| A2 | 100 | 0 | 4 | 10 |
| A3 | 100 | 0 | 3 | 5 |
| A4 | 100 | 0 | 3 | 3 |
| A5 | 100 | 0 | 2 | 2 |
| A6 | 100 | 0 | 9 | 9 |
| A7 | 100 | 0 | 8 | 19 |
| A8 | 93.33 | 1 | 13 | 15 |
| A9 | 95.45 | 1 | 16 | 26 |
| A10 | 69.23 | 4 | 2 | 16 |
>TRINITY_DN40229_c0_g1_i4 from sample A10 / Example spliced isoformGAACTGGGGCGCTGATTTCCAGAGGCTTTCTGCAGGTGCAGCACTGGTTGGACTTACATTGTGGATGGATCATATGCAGGATGCTTCGCTGCAGGGTATCCCAGAATCTCCAAAGTTGGTTACATTAGTAACTGGAAGCACCATATACAGTAATGCCATTTCTGTGAATAAGACTTTGAAGACTTACCTATGGGAGATGG
GTTCACCTTTTCTACCTTCTAATACTCAGTCTGGCATTCTTATTGCAAAAGGTCATTCACTCCGTATGTGGCTTAAGGATTCACCTTTCTGTATGGATCTTGAACTCAAGGATTGCTCATCTCTACCAGACTGTAACTCAATGCAGATTTACAAAGGTTCTTTTATGCGGGCTGAACTAGTCCCTGCATTTATGCAGATA
CGCGAGAGCATGGGGGAAGTAAGACCAAAAAAATTCTCAAGGTTAGCCCTCATGTCCAGTGAGAGACGGGAAAAAGCAATTGCTGCTGATTTAGAGGGTAGAAAAGAAGTTCTAGAAAAAAGGAAGGGTTTTCTACAATCGAAGAGAAGAAAGAGATAACTGTTGCCACTACAAACCAAGAGTTTTCGACAGGACATCCT
CGAGTAGATGTGGAACTCCAGTGACTATCATATGGAACCTTTGGTACTGCCTCATAGCAATATGTGGTTAATATTTTCATTATCCTTATCCGGAGTCTGAATTTGGAAATTGATGTCACTACTTTCAGATGTCAAGTACAATGATCTATAAGTCAACTTCCCAAGAATTAATGCCAGCCTGCCAGGTGCAGCACTGGTTG
GACATACAATGTGGATGGATCATATGCAGGAATTATTCAACCTTGTGCTAACCAAAATTAATTTGCTCTATAGGATGCTTCTTTGCAGGGTGTCCTAGAATCTCCAAAGCTGGTTGCATTGATTTGCAAAGGCTCTTCTATGCAGGCTGAACTGGTCCCTGCATTTAGACAGATACACGAGAGTGTGGGTAAATAAGAGC
AAAAATCATCTTAAGGTGGTTAGCAAGGAGTTTGATTGCAAGATCTAGTCTTCATTGATATGACTTCGCTAACAGGCTTAGATAGGACATCTTCAAGAAGATGTGGAGCTCTAGTGACTAGCATATGAAACCTTTGGTATCGCTTCATAGTCAGCATTTAGTTAACCTTCATTATCCTTGTCTGGAGTTCGAATTCAGAA
ATGGATATCACCACTTTAGACTCTGCAATAATTCTGACATAGATACATAGTTATGCATCTCTATCTAGTCTACAAGACCAGAGTTTGTTAAGGTAGTAGTTATTCCTTTTTGAGTGGAAATTATCTTTACCCTTTTTATAACACGTTTTCAGAAGTAATTGGGAATATGCAAAAGTGGGCAAGCTAGTTAGATGGATATA
TTCACAGAATAAAGACATGTAATCTATGTTAGATGATCATTATATTCCACTATTTTTTGGTTTCCTGCAGTGAATGATGGAGGTTTTACATATTCAAGAATCTGCTAATGAAGGGTAGTACAAAGAAATGCTTTGTCGGTACAGTTTATAACCAAGAAACTGACTCTGGTGGTTCCAGTATATACATCTGTCAGTAATCA
ATTGAATGGATGCTATCTGGTATCAATCAGGGTTCATAAAAAGTTATAAAATTCTGAGATGTTGACTTGCAGAGTTCGTATTGCAAAATGTCTGCAAAACGTCTGAGAATGGTAGCACTAATTCAGTGTTAAAGTACTTCGTA
>TRINITY_DN40229_c0_g1_i1 from sample A10 / Example unspliced isoform:GAACTGGGGCGCTGATTTCCAGAGGCTTTCTGCAGGTGCAGCACTGGTTGGACTTACATTGTGGATGGATCATATGCAGGATGCTTCGCTGCAGGGTATCCCAGAATCTCCAAAGTTGGTTACATTAGTAACTGGAAGCACCATATACAGTAATGCCATTTCTGTGAATAAGACTTTGAAGACTTACCTATGGGAGATGG
GTTCACCTTTTCTACCTTCTAATACTCAGTCTGGCATTCTTATTGCAAAAGGTCATTCACTCCGTATGTGGCTTAAGGATTCACCTTTCTGTATGGATCTTGAACTCAAGGATTGCTCATCTCTACCAGACTGTAACTCAATGCAGATTTACAAAGGTTCTTTTATGCGGGCTGAACTAGTCCCTGCATTTATGCAGATA
CGCGAGAGCATGGGGGAAGTAAGACCAAAAAAATTCTCAAGGTTAGCCCTCATGTCCAGTGAGAGACGGGAAAAAGCAATTGCTGCTGATTTAGAGGGTAGAAAAGAAGTTCTAGAAAAAAGGAAGGGTTTTCTACAATCGAAGAGAAGAAAGAGATAACTGTTGCCACTACAAAGTAAGTGGCTATAGATGTCAAACAA
GGATGCTGAGGCATTTCTTGATCTTGAGGTTGGTTTGTTAATATCTTCTATGTGAACACTGCACACTTGCCAGATGGTTAGCAAGGAGTTGACATCCAGTCTTTATTATATGACAGCCAAGAGTTTTCGACAGGACATCCTCGAGTAGATGTGGAACTCCAGTGACTATCATATGGAACCTTTGGTACTGCCTCATAGCA
ATATGTGGTTAATATTTTCATTATCCTTATCCGGAGTCTGAATTTGGAAATTGATGTCACTACTTTCAGATGTCAAGTACAATGATCTATAAGTCAACTTCCCAAGAATTAATGCCAGCCTGCCAGGTGCAGCACTGGTTGGACATACAATGTGGATGGATCATATGCAGGAATTATTCAACCTTGTGCTAACCAAAATT
AATTTGCTCTATAGGATGCTTCTTTGCAGGGTGTCCTAGAATCTCCAAAGCTGGTTGCATTGgtaattggaagcaccatatacagtaatgtcatttgtgtgaattagactcaaggctttctgatgggagatgggttcaccttttctaccttctaatactcttgatattcttactgcaaaagatcattcaatcttgaacta
aaggattgctcatctctaccagATTTGCAAAGGCTCTTCTATGCAGGCTGAACTGGTCCCTGCATTTAGACAGATACACGAGAGTGTGGGTAAATAAGAGCAAAAATCATCTTAAGGTTAGCTCTCATATTGAGTGAGAAATGGGAAAAAGTAATTGCTACTTTTTTAGAGGGTAGAAAATAAGTTCTATAAAAAAAGGG
TTATCTATGATTGAAGAGAAGAAGAAGTAATTGTTGCATCTAAAAAATAGAAGTGGCTATAAATGTCAAACAAGAATGCTGATGCATTTTTGGATTTGAGGTTTGATGTTTGAATGC