sp|Q9SIH1|CP18B_ARATH ----> Peptidyl-prolyl cis-trans isomerase CYP18-2

Intron 1 GTCTTCATTT ... TTGTTAATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.66	133.9	17.5	40.4
A2	17.05	100.8	17.1	22.8
A3	18.15	102.5	15.5	26.1
A4	19.72	73.6	12.8	19.5
A5	18.29	54.1	7.3	13.9
A6	21.03	580.5	97.4	172.9
A7	19.93	787.5	120.2	222.6
A8	20.77	792.7	98.6	239.1
A9	17.54	808.2	128.5	189.9
A10	17.53	633.3	101.6	150.4

>TRINITY_DN120235_c6_g2_i3 from sample A1 / Example spliced isoform

GTTAAATTGGTTGCTAGTTACCATCTCGCAAAGTATAATCCGTCATAATATTCGGAAGAAAGTGGCGAGCGAATTATGTTTGTCATTCCGTGTTGAGTAAAGGAAAAACGATGGTGGCAACAGGAGAAGGTCCTCCCGAGGTCACCCTCGAGACCTCCATGGGTCCTATAGCAGTGGAGCTCTACCACAAGCACGCCCCC
AAGACCTGCAGGAATTTCTTGGAGCTCTCAAGGAGGGGCTATTACAACAATGTCAAATTCCACCGGGTCATCAAGGATTTCATGGTGCAAGGTGGAGACCCAACTGGCACAGGAAGGGGCGGGGAGTCAATTTATGGCCCCAGATTTGAAGATGAAATTACCCGAGATTTGAAACATACTGGAGCGGGAATATTGTCCAT
GGCTAATGCAGGTCCTAATACAAATGGCAGTCAATTCTTCATTTCACTGGCACCGACACCATGGCTTGATGAAAAGCACACTATTTTTGGAAGGGTATGCAAGGGGATGGACGTTGTCAAACGGCTTGGAAATATTCAGACTGATAAGAATGATCGGTATGTTTTTCATGAACTACTTTTCCTACAAATTTTTAGGTCTT
TGTCTGCATATAGATTTCTTCTAAATCTGTGTAACTGCTTTACACATTCCTTCTATTTACTCTTGATAGTCCTTCAGATTTTCCATACTTGACTTGGCAGTTGGCACAGTATAATACAGTTCTTATTGGGAAGGGTTTTCCTGGGAATGGGGATAGGAGGAAACATTCCCTTTTAAGTTTTTCTGTGGGACGTCTCTGTG
GAACAGGGGGCATTTCCCCTATCATAGCAATGACAGTTAGAAGTCTATGGAATCCCTGAACTGTCTTTAGAACACCAAAGCATTCCTGAAACAGTCGAGGGACTGCTGGGTGTCCCTTGATCAAGACTATGGACTTATCACTTTAGAAAGAAAAAACATAAATGAAATGAAGTTTAGCTACTAAGTTAAGCTAAACACTG
ACCCAAAATCTG

>TRINITY_DN120235_c6_g2_i6 from sample A1 / Example unspliced isoform:

GTTAAATTGGTTGCTAGTTACCATCTCGCAAAGTATAATCCGTCATAATATTCGGAAGAAAGTGGCGAGCGAATTATGTTTGTCATTCCGTGTTGAGTAAAGGAAAAACGATGGTGGCAACAGGAGAAGGTCCTCCCGAGGTCACCCTCGAGACCTCCATGGGTCCTATAGCAGTGGAGCTCTACCACAAGCACGCCCCC
AAGACCTGCAGGAATTTCTTGGAGCTCTCAAGGAGGGGCTATTACAACAATGTCAAATTCCACCGGGTCATCAAGgtcttcatttcattctctccctcattggcatcactgtagattacatatggttggttttctgcactggttactgttgttgggtttgttttgttaatagGATTTCATGGTGCAAGGTGGAGACCCAA
CTGGCACAGGAAGGGGCGGGGAGTCAATTTATGGGTGAGTTACCTCCACACCATCATCATCATTATTATATTCTGTCTTTCAATGGCCTCGTACCTTTGCTTTCTCACATGTGTGTATAGGTCTTTTTACATTGCACAAATAGTCTGTTTTTCTCAATTTGAGTAGTGAAAACGCTAAATAGCGCCTGGACTTAATTTTT
AAGAATGCTTATTCAACTTTGCCCAGTGGGCTAGGACTAACGGTGGGGAGGAAGGAGTTTCACACCCCCGGTCAAGGTTCTACTACCGC

Intron 2 GTTACTGCAA ... TGGTTGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	81.94	26	118	4
A2	84.62	18	99	5
A3	83.93	18	94	4
A4	82.91	20	97	6
A5	75.41	15	46	2
A6	81.88	253	1143	96
A7	83.34	219	1095.5	74
A8	86.5	278	1781.5	111
A9	86.43	187	1191	88
A10	86.67	108	702	38

>TRINITY_DN41572_c0_g1_i1 from sample A6 / Example spliced isoform

GTTGAACAACGCACCCACTATCGTTAAATTGGTTGCTAGTTACCATCTTGCAAAGTATAATCCGTCATAATATTCGGAAGAAAGTGGCGAGCGAATTACGTTTGTCATTCGGTGTTGAGTAAAGGAAAAACGATGGTGGCAACAGGAGAAGGTCCTCCCGAGGTCACCCTCGAGACCTCCATGGGTCCTATAGCAGTGGA
GCTCTACCACAAGCACGCCCCCAAGACCTGCAGGAATTTCTTGGAGCTCTCAAGGAGGGGCTATTACAACAATGTCAAATTCCACCGGGTTATCAAGGATTTCATGGTGCAAGGTGGAGACCCAACTGGCACAGGAAGGGGCGGGGAGTCAATTTATGGCCCCAGATTTGAAGATGAAATTACCCGAGATTTGAAACATA
CTGGAGCGGGAATATTGTCCATGGCTAATGCAGGTCCGAACACAAATGGCAGTCAATTCTTCATTTCACTGGCACCGACACCATGGCTTGATGAAAAGCACACTATTTTTGGAAGGGTATGCAAGGGGATGGACGTTGTCAAACGGCTTGGAAATATTCAGACTGATAAGAATGATCGACCTATTCATGATGTGAAAATA
TTACGAACAACAGTCAAAGACTGATTCATTCCAAATCAAGAAAGTCAATTGCTCCTTCAGCTACATTTGATCATCTGTTGCAGATTTACAAGACATTGCCATTGTGAGGAATTCAGTTTTAGCTTTTGTTGTTTTTATTAGAAAGCCCTTCTGTGCTGCCTTTTCAATAAAATTTCATTTTATGGACTATTTTCCTTTGG
TGAATATTCAATCCTTCCCTAAGTCCATATGGAATAAGAAGGGTTCATCAATTTTCTTTTACAATCCATAATATAATCACATTCAGTGGAATCTCCAGGAAATTAGAGCAGGGTATATATATTTCAGCTTGGATGAGATGTTACTATAATTTTGTGATCGAGTTTTCAGAAACTTCCTTATGTCTGATAATATTGAATGT
TTGACAGTTGATTGCTCTGGC

>TRINITY_DN41572_c0_g1_i2 from sample A6 / Example unspliced isoform:

GTTGAACAACGCACCCACTATCGTTAAATTGGTTGCTAGTTACCATCTTGCAAAGTATAATCCGTCATAATATTCGGAAGAAAGTGGCGAGCGAATTACGTTTGTCATTCGGTGTTGAGTAAAGGAAAAACGATGGTGGCAACAGGAGAAGGTCCTCCCGAGGTCACCCTCGAGACCTCCATGGGTCCTATAGCAGTGGA
GCTCTACCACAAGCACGCCCCCAAGACCTGCAGGAATTTCTTGGAGCTCTCAAGGAGGGGCTATTACAACAATGTCAAATTCCACCGGGTTATCAAGGATTTCATGGTGCAAGGTGGAGACCCAACTGGCACAGGAAGGGGCGGGGAGTCAATTTATGGCCCCAGATTTGAAGATGAAATTACCCGAGATTTGAAACATA
CTGGAGCGGGAATATTGTCCATGGCTAATGCAGGTCCGAACACAAATGGCAGTCAATTCTTCATTTCACTGGCACCGACACCATGGCTTGATGAAAAGCACACTATTTTTGGAAGGGTATGCAAGGGGATGGACGTTGTCAAACGGCTTGGAAATATTCAGACTGATAAGAATGATCGACCTATTCATGATGTGAAAATA
TTACGAACAACAGTCAAAGACTGATTCATTCCAAATCAAGAAAGTCAATTGCTCCTTCAGCTACATTTGATCATCTGTTGCAGgttactgcaatttttagacatcattatattatacttcatccttaaatgcacccttcaatgaagcagctactattgatattttggctctaaaatatggactttctttattttaaatac
ctaaaacagagcaatctcatgaaatttgtattagaaaatgttagctatattttatatatggtttcagtggagtttcctgatgtgtagattacactgttaacaaatgcaattgtcttgtttttcttattctggcttgggaatttggttggcagATTTACAAGACATTGCCATTGTGAGGAATTCAGTTTTAGCTTTTGTTG
TTTTTATTAGAAAGCCCTTCTGTGCTGCCTTTTCAATAAAATTTCATTTTATGGACTATTTTCCTTTGGTGAATATTCAATCCTTCCCTAAGTCCATATGGAATAAGAAGGGTTCATCAATTTTCTTTTACAATCCATAATATAATCACATTCAGTGGAATCTCCAGGAAATTAGAGCAGGGTATATATATTTCAGCTTG
GATGAGATGTTACTATAATTTTGTGATCGAGTTTTCAGAAACTTCCTTATGTCTGATAATATTGAATGTTTGACAGTTGATTGCTCTGGC