sp|Q67XL4|Y3544_ARATH ----> Uncharacterized CRM domain-containing protein At3g25440, chloroplastic
Intron 1 GTACTCATCC ... GTTTTACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.57 | 10 | 1.5 | 4 |
| A2 | 30.56 | 25 | 3 | 11 |
| A3 | 35.85 | 34 | 6.5 | 19 |
| A4 | 35.33 | 16 | 3.8 | 8.8 |
| A5 | 23.53 | 13 | 4.5 | 4 |
| A6 | 20 | 28 | 3 | 7 |
| A7 | 38.18 | 34 | 4 | 21 |
| A8 | 21.88 | 25 | 1.8 | 7 |
| A9 | 40.35 | 34 | 2.5 | 23 |
| A10 | 32 | 34 | 9.5 | 16 |
>TRINITY_DN97538_c0_g1_i4 from sample A4 / Example spliced isoformCGCGTGAATAGGTATATGGAATAGTATGAAGATTCTTGACATTCAGGAATTTCAGTTTTGGTTTTGGGCCCTGGAGAAGTCTTCTGGTTGTAAATGGAAGCGTATGTTGTAAGACAATACCGTTTTATCATGGCTCCGAACATGAGAAGGTCCTTGAAAGATCTCCTTCGGTTCTATGGTACGGCTATACCCGAACCCAC
TCGCATGTTGGAGCGGAGACCCGCCGTAAGCTATCTGAACAGGTCGGGCTCAGGTACTCCAAATCCGAGCTCAACGGCAAAGGAGTCGTCCATTTTCCAGTGTGTAATGCCTTATTTACCAGAAGCTTGAGCATAGATGCTGCCCTGAGAAACGAGAGACCGGAAGAACGCAAGGAGGCACAGCAGAAACCCAAGGTGAA
GAGGAGAAAGCTCAAGGGAAGGAGGGTGGTTGCCAAATGGCTTAAATATTTCCGGTGGAAAAAGAAGAAAGAATACGAGCGGATGACACCCGAGGAGAAGCTCATGTATAATCTCAAAAAGGCTCGAAGAAAAGAGGAGCGCTTGGTAGCAGCTTTGCAGAAACTTATGCCTAAAGAATCATCGGATCCCACGCATGACC
CTGAAATTCTTACTCCCGAGGAGCACTTCTATTATCTTAAAATGAGTCATAAATGCAAGAATTATGTTCCAATTGGCAGACGTGGAGTTTTTAATGGTGTAATCTTGAATATGCATTTGCATTGGAAGAAGCATCAAACTGTTAAAGTGATTGTCAAGACATTCACTCCAGACGAGGTTCGAGATATAGCAGGAGAATTG
GCAAGACTAACTGGTGGTATTGTACTTGATATATATGAAGGGAACACAATTATGATGTATCGCGGAAAAAATTATGCACAACCACCAACTGAGATCATGTCACCAAGGGCTGCACTCTCCAAGAGAAAGGCTTTAGATAAATCTACTTGTACAGAATCTCTTCGATCTGTAAAGATTTTTATAGCAAGATTGGAAAAAGA
TCTGGAAGTGATTCGCCAGAAGATGAAAGCTGAAAGCCAGATAAACTCTGAGCACGGCAGGGCATTGTTGATGTCAAAAGATCAGCCTGAGACAGAACATGTTCCAGACAACCGGGCTGCCTTGCGGAAGTATTTGCCTATGGACAGTGAGTATGTGGCAGAGCATACCAGAGAGATAGAGGATGTTTCTGAGTCTAGCG
GGACTGAAACAGAGCATGTTTCAGATGCAGAGTTTGAGATGGCTTCAGATTCAGAAGCATTATCAGATTTGTATGAAACTGATTCCGAGATGAACTCAGAGTCATCTGATGAACCTGATCATTCTTTATATTTGGACAAGATTGATGCTGTGCCCCTGGAGGATAAGAAAAACGTTTCAGCTTTTTCAGAACATTTGAGC
AAAATGCCCAAAGAATCAGAGAAGGCTGATGGGTCAGCTGATGATCCTGGCCTTTCTGAACTTGATGAGGTGGACCAGATGTTTCTGCGTGCTGCTTCACTTCTTGAAAAGAAAAAATAAGGGCGGACAATACTTGTTTCAGAATGTTGAATGAGATTCATTGGTTTTGGTACTCGAGAACGTGTTGGAAAGCAGGCAGA
TTTGACTGTTCACGGAGCTAGATGACAAGCTCTCTGTTTACTTGTATCTTGAAAATCAAGTGTCTTAGAAAGGCGTCATATTAGTAGTTCTCTACCTCATTTCTGTATGCACATGCAAGTACCAGTGCCTTTTTATGACCCAGATTCTGTTTGGAATGAGCTGGAAATATGCATCTTTGCCATGATTATTCAATTTGAAT
AATTTTATTGGAACAAATTGCTTTCTTCTTAGCTATAAGTCACGACCTTCCATTGTAACGGAGATGTCCAAATCAAGCATGTCCTTTGTCCATTTTAAACTTTTGGTTCATAGGATGATCAGAACCATGTTTAGTTGATTTTCTGCTATTTCTTGCAGGTGAACCATGCACACAACAGAACGAAATAATTGAGCCC
>TRINITY_DN97538_c0_g1_i3 from sample A4 / Example unspliced isoform:CGCGTGAATAGGTATATGGAATAGTATGAAGATTCTTGACATTCAGGAATTTCAGTTTTGGTTTTGGGCCCTGGAGAAGTCTTCTGGTTGTAAATGGAAGCGTATGTTGTAAGACAATACCGTTTTATCATGGCTCCGAACATGAGAAGGTCCTTGAAAGATCTCCTTCGGTTCTATGGTACGGCTATACCCGAACCCAC
TCGCATGTTGGAGCGGAGACCCGCCGTAAGCTATCTGAACAGgtactcatccctttcttcaactcccacattcttttagttgccgagacgtgaacccgtaatgggctttcaactattgaatagtttgtctggtgggttttacaagGTCGGGCTCAGGTACTCCAAATCCGAGCTCAACGGCAAAGGAGTCGTCCATTTTC
CAGTGTGTAATGCCTTATTTACCAGAAGCTTGAGCATAGATGCTGCCCTGAGAAACGAGAGACCGGAAGAACGCAAGGAGGCACAGCAGAAACCCAAGGTGAAGAGGAGAAAGCTCAAGGGAAGGAGGGTGGTTGCCAAATGGCTTAAATATTTCCGGTGGAAAAAGAAGAAAGAATACGAGCGGATGACACCCGAGGAG
AAGCTCATGTATAATCTCAAAAAGGCTCGAAGAAAAGAGGAGCGCTTGGTAGCAGCTTTGCAGAAACTTATGCCTAAAGAATCATCGGATCCCACGCATGACCCTGAAATTCTTACTCCCGAGGAGCACTTCTATTATCTTAAAATGAGTCATAAATGCAAGAATTATGTTCCAATTGGCAGACGTGGAGTTTTTAATGG
TGTAATCTTGAATATGCATTTGCATTGGAAGAAGCATCAAACTGTTAAAGTGATTGTCAAGACATTCACTCCAGACGAGGTTCGAGATATAGCAGGAGAATTGGCAAGACTAACTGGTGGTATTGTACTTGATATATATGAAGGGAACACAATTATGATGTATCGCGGAAAAAATTATGCACAACCACCAACTGAGATCA
TGTCACCAAGGGCTGCACTCTCCAAGAGAAAGGCTTTAGATAAATCTACTTGTACAGAATCTCTTCGATCTGTAAAGATTTTTATAGCAAGATTGGAAAAAGATCTGGAAGTGATTCGCCAGAAGATGAAAGCTGAAAGCCAGATAAACTCTGAGCACGGCAGGGCATTGTTGATGTCAAAAGATCAGCCTGAGACAGAA
CATGTTCCAGACAACCGGGCTGCCTTGCGGAAGTATTTGCCTATGGACAGTGAGTATGTGGCAGAGCATACCAGAGAGATAGAGGATGTTTCTGAGTCTAGCGGGACTGAAACAGAGCATGTTTCAGATGCAGAGTTTGAGATGGCTTCAGATTCAGAAGCATTATCAGATTTGTATGAAACTGATTCCGAGATGAACTC
AGAGTCATCTGATGAACCTGATCATTCTTTATATTTGGACAAGATTGATGCTGTGCCCCTGGAGGATAAGAAAAACGTTTCAGCTTTTTCAGAACATTTGAGCAAAATGCCCAAAGAATCAGAGAAGGCTGATGGGTCAGCTGATGATCCTGGCCTTTCTGAACTTGATGAGGTGGACCAGATGTTTCTGCGTGCTGCTT
CACTTCTTGAAAAGAAAAAATAAGGGCGGACAATACTTGTTTCAGAATGTTGAATGAGATTCATTGGTTTTGGTACTCGAGAACGTGTTGGAAAGCAGGCAGATTTGACTGTTCACGGAGCTAGATGACAAGCTCTCTGTTTACTTGTATCTTGAAAATCAAGTGTCTTAGAAAGGCGTCATATTAGTAGTTCTCTACCT
CATTTCTGTATGCACATGCAAGTACCAGTGCCTTTTTATGACCCAGATTCTGTTTGGAATGAGCTGGAAATATGCATCTTTGCCATGATTATTCAATTTGAATAATTTTATTGGAACAAATTGCTTTCTTCTTAGCTATAAGTCACGACCTTCCATTGTAACGGAGATGTCCAAATCAAGCATGTCCTTTGTCCATTTTA
AACTTTTGGTTCATAGGATGATCAGAACCATGTTTAGTTGATTTTCTGCTATTTCTTGCAGGTGAACCATGCACACAACAGAACGAAATAATTGAGCCC
Intron 2 GTAAAGTGTG ... CTCAATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.1 | 14 | 25 | 1 |
| A2 | 87.5 | 1 | 7 | 3 |
| A3 | 68 | 16 | 34 | 3 |
| A4 | 51.43 | 17 | 18 | 2 |
| A5 | 77.27 | 5 | 17 | 2 |
| A6 | 100 | 0 | 1 | 0 |
| A7 | 53.03 | 31 | 35 | 0 |
| A8 | 55 | 9 | 11 | 1 |
| A9 | 58.93 | 23 | 33 | 0 |
| A10 | 56.45 | 27 | 35 | 2 |
>TRINITY_DN97538_c0_g1_i5 from sample A4 / Example spliced isoformCGCGTGAATAGGTATATGGAATAGTATGAAGATTCTTGACATTCAGGAATTTCAGTTTTGGTTTTGGGCCCTGGAGAAGTCTTCTGGTTGTAAATGGAAGCGTATGTTGTAAGACAATACCGTTTTATCATGGCTCCGAACATGAGAAGGTCCTTGAAAGATCTCCTTCGGTTCTATGGTACGGCTATACCCGAACCCAC
TCGCATGTTGGAGCGGAGACCCGCCGTAAGCTATCTGAACAGGTCGGGCTCAGGTACTCCAAATCCGAGCTCAACGGCAAAGGAGTCGTCCATTTTCCAGTGTGTAATGCCTTATTTACCAGAAGCTTGAGCATAGATGCTGCCCTGAGAAACGAGAGACCGGAAGAACGCAAGGAGGCACAGCAGAAACCCAAGGTGAA
GAGGAGAAAGCTCAAAGGAAGGAGGGCGGTTGCCAAATGGCTTAAATATTTCCGGTGGAAAAAGAAGAAAGAATACGAGCGGATGACACCCGAGGAGAAGCTCATGTATAATCTCAAAAAGCCAACTTACAGTATTAAAATTGGAATCATTACGTTCAGAATCAGTGAGGGGTATTTATTATGCCAAAGTCCTCTAGGAC
TTGCACGTGGCCCCGCC
>TRINITY_DN97538_c0_g1_i2 from sample A4 / Example unspliced isoform:CGCGTGAATAGGTATATGGAATAGTATGAAGATTCTTGACATTCAGGAATTTCAGTTTTGGTTTTGGGCCCTGGAGAAGTCTTCTGGTTGTAAATGGAAGCGTATGTTGTAAGACAATACCGTTTTATCATGGCTCCGAACATGAGAAGGTCCTTGAAAGATCTCCTTCGGTTCTATGGTACGGCTATACCCGAACCCAC
TCGCATGTTGGAGCGGAGACCCGCCGTAAGCTATCTGAACAGGTCGGGCTCAGGTACTCCAAATCCGAGCTCAACGGCAAAGGAGTCGTCCATTTTCCAGTGTGTAATGCCTTATTTACCAGAAGCTTGAGCATAGATGCTGCCCTGAGAAACGAGAGACCGGAAGAACGCAAGGAGGCACAGCAGAAACCCAAGGTGAA
GAGGAGAAAGCTCAAGGGAAGGAGGGTGGTTGCCAAATGGCTTAAATATTTCCGGTGGAAAAAGAAGAAAGAATACGAGCGGATGACACCCGAGGAGAAGCTCATGTATAATCTCAAAAAGgtaaagtgtggaagccccttttactacaatcaagaccattttgaagtcactaagtgccactttatgggatgatacgagt
gcatttacttttctttactttcgagaatatttaacccagtgcagagataagtaaatttgtctgagatatgtttttttttttaatgtgatttcctggatgcgggaaattcggcttgcccaatctgggaaaatatcaacaacattcaaattgaaatcatttcgctcaatgtagCCAACTTACAGTATTAAAATTGGAATCAT
TACGTTCAGAATCAGTGAGGGGTATTTATTATGCCAAAGTCCTCTAGGACTTGCACGTGGCCCCGCC