NA ----> NA
Intron 1 GTAAGTAAGT ... TAATTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.26 | 13 | 38 | 37 |
| A2 | 83.75 | 8 | 40.5 | 42 |
| A3 | 74.84 | 20 | 72 | 47 |
| A4 | 72.22 | 5 | 13 | 13 |
| A5 | 78.95 | 2 | 10 | 5 |
| A6 | 78.31 | 68 | 252 | 239 |
| A7 | 78.8 | 78 | 295 | 285 |
| A8 | 74.58 | 221 | 702 | 595 |
| A9 | 77.95 | 106 | 433.5 | 316 |
| A10 | 77.9 | 51 | 212.5 | 147 |
>TRINITY_DN112729_c0_g1_i1 from sample A1 / Example spliced isoformCTTGCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAGTTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATTAAGCAAAGAA
AGTCCATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGCAGTTCCAGTT
TCAAAAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCAAGGCTACTGC
TTCAAGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGACTAGCACTGG
AATCTAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTCTGAGTGCAAG
GGATTACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGCCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTAACAAGGCTTG
CTCGGCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTGATACCTGTAC
CTGGCATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTTTCTTCATTCA
GATCAACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGAATTTGTTGAAAATCTGGAAACTTCACCAAGTCATGCAACTTTACCACTCAGTGACTTTGATATTCAAAACATGAGTGTGGACACATTGAT
GGAGGAAGTAGTTTCATGTATAGTGTCAAGTATGGATGATCGCACTGATTCCCCAGATCAGGGATCTGTTAAATCTTCGGATTATCAGAATATTGATGCGAGTTGTGTCGGCGAGAGTAGTGCAGAAGTATTGCATAGCTCAGATATTAGCACCACTAGCAAGAGTTTTGGCGATGCCCATGTTAATACCACTGGTTTTA
GTTTCGCTCAAAACATCGACATGGCTGCTAGAAATAGTGACAATTTGGATGATAGTCCCAATTCGAAGGATGGATATGCGGAAGAAACAGATGAAACTTTGTCATTTTTGAAGGAAAAAGGTGAAAAAGAAGACAATAGTACTACAGATACTGTACAGCAGGATAAGACAAGACATGACATACTTGAGGATAATCAAAGC
AGGGTTGTGAAAGGTAAACCTGAACTCGATATAACTAACTGTGGATCTCACGGGAGTATAGCAATCACTGGAAAAGGAAGCCCTAAAAAGGATCTGCCACATGAAATTCTTGCCATTCTGAAGAAAGAAAATACACTTAATGAGTCTTGCGAAGTGCCTTTAACTGAGGGTGAAAGCAGAGATACTCTTGTCAAAGAGGT
GATGTGGCGGAAGGACAAATCCAACGAGGGAAGTAAAAGCCATTCGCATAATACATGTGCTACTCCCGGAACGGTCAGACGTTCATCGAGGCTCAGAGATCGGAAAAACACTTGAGTCACTAATTAGGTTTATTGGGTTTTAGTTAAATACAGATTACTTTGAAAATTATCAGCAGTATCTAGCTCTATATTCGCTATTG
AATTCAGATTTTTGAATTGTAACATGTAGCACGTTACCTGTAAGTCCATAGCTGCTTGCTATCAGTTAAAGCATTTGAAGTAACAATGAGCGGGTACCAGAATCCAGTTTCACACCGTGCGAGAAACATTGCATTGAATATTTTGTAAGGGTGGGGCTTGTAAATTTCCTTTTTTTCGAAAGCGGTTCATTTGATCATTC
GGAATGATATTTAACAATAGCAGAGGGATGGAGTGTTTACCCGAAACTTTGGACTCTGAAATTTTCAAACAATTAAATCCAGAAATCAGATATATCTACCAATACTTGTTTTCCA
>TRINITY_DN112729_c0_g1_i2 from sample A1 / Example unspliced isoform:CTTGCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAGTTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATTAAGCAAAGAA
AGTCCATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGCAGTTCCAGTT
TCAAAAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCAAGGCTACTGC
TTCAAGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGACTAGCACTGG
AATCTAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTCTGAGTGCAAG
GGATTACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGCCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTAACAAGGCTTG
CTCGGCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTGATACCTGTAC
CTGGCATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTTTCTTCATTCA
GATCAACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGAATTTGTTGAAAATCTGGAAACTTCACCAAGTCATGCAACTTTACCACTCAGTGACTTTGATATTCAAAACATGAGTGTGGACACATTGAT
GGAGGAAGTAGTTTCATGTATAGTGTCAAGTATGGATGATCGCACTGATTCCCCAGATCAGGGATCTGTTAAATCTTCGGATTATCAGAATATTGATGCGAGTTGTGTCGGCGAGAGTAGTGCAGAAGTATTGCATAGCTCAGATATTAGCACCACTAGCAAGAGTTTTGGCGATGCCCATGTTAATACCACTGGTTTTA
GTTTCGCTCAAAACATCGACATGGCTGCTAGAAATAGTGACAATTTGGATGATAGTCCCAATTCGAAGGATGGATATGCGGAAGAAACAGATGAAACTTTGTCATTTTTGAAGGAAAAAGGTGAAAAAGAAGACAATAGTACTACAGATACTGTACAGCAGGATAAGACAAGACATGACATACTTGAGGATAATCAAAGC
AGGGTTGTGAAAGGTAAACCTGAACTCGATATAACTAACTGTGGATCTCACGGGAGTATAGCAATCACTGGAAAAGGAAGCCCTAAAAAGGATCTGCCACATGAAATTCTTGCCATTCTGAAGAAAGAAAATACACTTAATGAGTCTTGCGAAGTGCCTTTAACTGAGGGTGAAAGCAGAGATACTCTTGTCAAAGAGGT
GATGTGGCGGAAGGACAAATCCAACGAGGGAAGTAAAAGCCATTCGCATAATACATGTGCTACTCCCGGAACGGTCAGACGTTCATCGAGGCTCAGAGATCGGAAAAACACTTGAGTCACTAATTAGCACGTTACCTGTAAGTCCATAGCTGCTTGCTATCAGTTAAAGCATTTGAAGTAACAATGAGCGGGTACCAGAA
TCCAGTTTCACACCGTGCGAGAAACATTGCATTGAATATTTTGTAAGGGTGGGGCTTGTAAATTTCCTTTTTTTCGAAAGCGgtaagtaagtgttttggaactggtcaggtcaagaatctgtaattgcggagctaattaagctcaaacaagaatatttggaggttgaaaaaattaacaataggttatatatttgtaattc
tcagGTTCATTTGATCATTCGGAATGATATTTAACAATAGCAGAGGGATGGAGTGTTTACCCGAAACTTTGGACTCTGAAATTTTCAAACAATTAAATCCAGAAATCAGATATATCTACCAATACTTGTTTTCCA
Intron 2 GTAAGGATGG ... GAATCGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.72 | 14 | 27 | 3 |
| A2 | 38.46 | 20 | 24 | 1 |
| A3 | 41.46 | 12 | 16 | 1 |
| A4 | 42.86 | 8 | 7 | 5 |
| A5 | 100 | 0 | 2 | 6 |
| A6 | 63.16 | 7 | 12 | 12 |
| A7 | 62.5 | 21 | 39 | 31 |
| A8 | 53.97 | 29 | 49 | 19 |
| A9 | 45.91 | 43 | 58 | 15 |
| A10 | 47.54 | 32 | 46 | 12 |
>TRINITY_DN101241_c0_g1_i4 from sample A4 / Example spliced isoformCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAGTTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATTAAGCAAAGAAAGTC
CATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGCAGTTCCAGTTTCAA
AAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCAAGGCTACTGCTTCA
AGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGACTAGCACTGGAATC
TAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTCTGAGTGCAAGGGAT
TACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGTCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTAACAAGGCTTGCTCG
GCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTGATACCTGTACCTGG
CATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTTTCTTCATTCAGATC
AACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGTGATTATATTTCTGTCCTGCTATGTAAGTCAAGTTGTGATAAAGATCCCATAAATTCCATCAGTTGTTCTGATAAAGGATCTATAGTACAAGGC
>TRINITY_DN101241_c0_g1_i7 from sample A4 / Example unspliced isoform:CTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAGTTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATTAAGCAAAGAAAGTC
CATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGCAGTTCCAGTTTCAA
AAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCAAGGCTACTGCTTCA
AGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGACTAGCACTGGAATC
TAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTCTGAGTGCAAGGGAT
TACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGTCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTAACAAGGCTTGCTCG
GCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTGATACCTGTACCTGG
CATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTTTCTTCATTCAGATC
AACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGgtaaggatggcggtgttaataattcctgttaagagcaagcttggaaagaggtcaactaagttccctagttttagaaattgattatgtttatacgt
atagtcggttatatgaaaagattttgtaactacgttatgacctacctgctatgctttaaagtttgattgagttgtgttggcgttgagtgaatcggcagTGATTATATTTCTGTCCTGCTATGTAAGTCAAGTTGTGATAAAGATCCCATAAATTCCATCAGTTGTTCTGATAAAGGATCTATAGTACAAGGC
Intron 3 GTTTATTGGG ... TTGAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.77 | 43 | 87 | 58 |
| A2 | 52.59 | 55 | 70 | 52 |
| A3 | 63.55 | 37 | 66 | 63 |
| A4 | 58.82 | 14 | 24 | 16 |
| A5 | 64.44 | 8 | 13 | 16 |
| A6 | 61.14 | 82 | 157 | 101 |
| A7 | 59.67 | 193 | 337 | 234 |
| A8 | 60.98 | 302 | 514 | 430 |
| A9 | 60.56 | 184 | 295 | 270 |
| A10 | 61.08 | 130 | 237 | 171 |
>TRINITY_DN103031_c0_g1_i1 from sample A2 / Example spliced isoformCGGGGATCTGCTTGCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAGTTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATT
AAGCAAAGAAAGTCCATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGC
AGTTCCAGTTTCAAAAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCA
AGGCTACTGCTTCAAGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGA
CTAGCACTGGAATCTAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTC
TGAGTGCAAGGGATTACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGTCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTA
ACAAGGCTTGCTCGGCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTG
ATACCTGTACCTGGCATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTT
TCTTCATTCAGATCAACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGAATTTGTTGAAAATCTGGAAACTTCACCAAGTCATGCAACTTTACCACTCAGTGACTTTGATATTCAAAACATGAGTGTGG
ACACATTGATGGAGGAAGTAGTTTCATGTATAGTGTCAAGTATGGATGATCGCACTGATTCCCCAGATCAGGGATCTGTTAAATCTTCGGATTATCAGAATATTGATGCGAGTTGTGTCGGCGAGAGTAGTGCAGAAGTATTGCATAGCTCAGATATTAGCACCACTAGCAAGAGTTTTGGCGATGCCCATGTTAATACC
ACTGGTTTTAGTTTCGCTCAAAACATCGACATGGCTGCTAGAAATAGTGACAATTTGGATGATAGTCCCAATTCGAAGGATGGATATGCGGAAGAAACAGATGAAACTTTGTCATTTTTGAAGGAAAAAGGTGAAAAAGAAGACAATAGTACTACAGATACTGTACAGCAGGATAAGACAAGACATGACATACTTGAGGA
TAATCAAAGCAGGGTTGTGAAAGGTAAACCTGAACTCGATATAACTAACTGTGGATCTCACGGGAGTATAGCAATCACTGGAAAAGGAAGCCCTAAAAAGGATCTGCCACATGAAATTCTTGCCATTCTGAAGAAAGAAAATACACTTAATGAGTCTTGCGAAGTGCCTTTAACTGAGGGTGAAAGCAGAGATACTCTTG
TCAAAGAGGTGATGTGGCGGAAGGACAAATCCAACGAGGGAAGTAAAAGCCATTCGCATAATACATGTGCTACTCCCGGAACGGTCAGACGTTCATCGAGGCTCAGAGATCGGAAAAACACTTGAGTCACTAATTAGATTTTTGAATTGTAACATGTAGCACGTTACCTGTAAGTCCATAGCTGCTTGCTATCAGTTAAA
GCATTTGAAGTAACAATGAGCGGGTACCAGAATCCAGTTTCACACCGTGCGAGAAACATTGCATTGAATATTTTGTAAGGGTGGGGCTTGTAAATTTCCTTTTTTTCGAAAGCGGTAAGTAAGTGTTTTGGAACTGGTCAGGTCAAGAATCTGTAATTGCGGAGCTAATTAAGCTCAAACAAGAATATTTGGAGGTTGAA
AAAATTAACAATAGGTTATATATTTGTAATTCTCAGGTTCATTTGATCATTCGGAATGATATTTAACAATAGCAGAGGGATGGAGTGTTTACCCGAAACTTTGGACTCTGAAATTTTCAAACAATTAAATCCAGAAATCAGATATATCTACCAATACTTGTTTTCCTCTGCAACTTCAACACTAAGTTGATCATAGAAAC
GATCTATCAATACTTTAGCATACGCTACTAAAAATCTCATGATCAAACATTTTTTTTAATGATGTATTTTGGTGC
>TRINITY_DN103031_c0_g1_i3 from sample A2 / Example unspliced isoform:CGGGGATCTGCTTGCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAGTTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATT
AAGCAAAGAAAGTCCATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGC
AGTTCCAGTTTCAAAAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCA
AGGCTACTGCTTCAAGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGA
CTAGCACTGGAATCTAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTC
TGAGTGCAAGGGATTACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGTCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTA
ACAAGGCTTGCTCGGCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTG
ATACCTGTACCTGGCATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTT
TCTTCATTCAGATCAACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGAATTTGTTGAAAATCTGGAAACTTCACCAAGTCATGCAACTTTACCACTCAGTGACTTTGATATTCAAAACATGAGTGTGG
ACACATTGATGGAGGAAGTAGTTTCATGTATAGTGTCAAGTATGGATGATCGCACTGATTCCCCAGATCAGGGATCTGTTAAATCTTCGGATTATCAGAATATTGATGCGAGTTGTGTCGGCGAGAGTAGTGCAGAAGTATTGCATAGCTCAGATATTAGCACCACTAGCAAGAGTTTTGGCGATGCCCATGTTAATACC
ACTGGTTTTAGTTTCGCTCAAAACATCGACATGGCTGCTAGAAATAGTGACAATTTGGATGATAGTCCCAATTCGAAGGATGGATATGCGGAAGAAACAGATGAAACTTTGTCATTTTTGAAGGAAAAAGGTGAAAAAGAAGACAATAGTACTACAGATACTGTACAGCAGGATAAGACAAGACATGACATACTTGAGGA
TAATCAAAGCAGGGTTGTGAAAGGTAAACCTGAACTCGATATAACTAACTGTGGATCTCACGGGAGTATAGCAATCACTGGAAAAGGAAGCCCTAAAAAGGATCTGCCACATGAAATTCTTGCCATTCTGAAGAAAGAAAATACACTTAATGAGTCTTGCGAAGTGCCTTTAACTGAGGGTGAAAGCAGAGATACTCTTG
TCAAAGAGGTGATGTGGCGGAAGGACAAATCCAACGAGGGAAGTAAAAGCCATTCGCATAATACATGTGCTACTCCCGGAACGGTCAGACGTTCATCGAGGCTCAGAGATCGGAAAAACACTTGAGTCACTAATTAGgtttattgggttttagttaaatacagattactttgaaaattatcagcagtatctagctctata
ttcgctattgaattcagATTTTTGAATTGTAACATGTAGCACGTTACCTGTAAGTCCATAGCTGCTTGCTATCAGTTAAAGCATTTGAAGTAACAATGAGCGGGTACCAGAATCCAGTTTCACACCGTGCGAGAAACATTGCATTGAATATTTTGTAAGGGTGGGGCTTGTAAATTTCCTTTTTTTCGAAAGCGGTAAGT
AAGTGTTTTGGAACTGGTCAGGTCAAGAATCTGTAATTGCGGAGCTAATTAAGCTCAAACAAGAATATTTGGAGGTTGAAAAAATTAACAATAGGTTATATATTTGTAATTCTCAGGTTCATTTGATCATTCGGAATGATATTTAACAATAGCAGAGGGATGGAGTGTTTACCCGAAACTTTGGACTCTGAAATTTTCAA
ACAATTAAATCCAGAAATCAGATATATCTACCAATACTTGTTTTCCTCTGCAACTTCAACACTAAGTTGATCATAGAAACGATCTATCAATACTTTAGCATACGCTACTAAAAATCTCATGATCAAACATTTTTTTTAATGATGTATTTTGGTGC
Intron 4 GTAATACGCT ... TGATTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 110 | 39 | 16 |
| A2 | 19.78 | 73 | 22 | 14 |
| A3 | 16.18 | 101 | 28 | 11 |
| A4 | 19.71 | 55 | 16 | 11 |
| A5 | 22.35 | 33 | 11 | 8 |
| A6 | 25.71 | 13 | 3 | 6 |
| A7 | 21.63 | 96 | 42 | 11 |
| A8 | 23.6 | 34 | 15 | 6 |
| A9 | 22.03 | 92 | 39 | 13 |
| A10 | 18.82 | 69 | 23 | 9 |
>TRINITY_DN100298_c0_g1_i3 from sample A5 / Example spliced isoformTGACAATAGTAATTTTTTCAAACTAAAGATTTTAGTTGCCGATTTTCCCTGCCTCGACTTTGCTATAAAGTTTAGCCCGCCATTTCACAATTCGAATATCTGCTTGCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAG
TTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATTAAGCAAAGAAAGTCCATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTA
AGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGCAGTTCCAGTTTCAAAAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACC
TGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCAAGGCTACTGCTTCAAGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGAT
TTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGACTAGCACTGGAATCTAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTT
TTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTCTGAGTGCAAGGGATTACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCAC
AGAGGGAGGTGATAACATCCAAGAAGCTGTCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTAACAAGGCTTGCTCGGCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCA
TTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTGATACCTGTACCTGGCATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGC
TCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTTTCTTCATTCAGATCAACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGA
CTTTCCCAGGGAATTTGTTGAAAATCTGGAAACTTCACCAAGTCATGCAACTTTACCACTCAGTGACTTTGATATTCAAAACATGAGTGTGGACACATTGATGGAGGAAGTAGTTTCATGTATAGTGTCAAGTATGGATGATCGCACTGATTCCCCAGATCAGGGATCTGTTAAATCTTCGGATTATCAGAATATTGATG
CGAGTTGTGTCGGCGAGAGTAGTGCAGAAGTATTGCATAGCTCAGATATTAGCACCACTAGCAAGAGTTTTGGCGATGCCCATGTTAATACCACTGGTTTTAGTTTCGCTCAAAACATCGACATGGCTGCTAGAAATAGTGACAATTTGGATGATAGTCCCAATTCGAAGGATGGATATGCGGAAGAAACAGATGAAACT
TTGTCATTTTTGAAGGAAAAAGGTGAAAAAGAAGACAATAGTACTACAGATACTGTACAGCAGGATAAGACAAGACATGACATACTTGAGGATAATCAAAGCAGGGTTGTGAAAGGTAAACCTGAACTCGATATAACTAACTGTGGATCTCACGGGAGTATAGCAATCACTGGAAAAGGAAGCCCTAAAAAGGATCTGCC
ACATGAAATTCTTGCCATTCTGAAGAAAGAAAATACACTTAATGAGTCTTGCGAAGTGCCTTTAACTGAGGGTGAAAGCAGAGATACTCTTGTCAAAGAGGTGATGTGGCGGAAGGACAAATCCAACGAGGGAAGTAAAAGCCATTCGCATAATACATGTGCTACTCCCGGAACGGTCAGACGTTCATCGAGGCTCAGAG
ATCGGAAAAACACTTGAGTCACTAATTAGGTTTATTGGGTTTTAGTTAAATACAGATTACTTTGAAAATTATCAGCAGTATCTAGCTCTATATTCGCTATTGAATTCAGATTTTTGAATTGTAACATGTAGCACGTTACCTGTAAGTCCATAGCTGCTTGCTATCAGTTAAAGCATTTGAAGTAACAATGAGCGGGTACC
AGAATCCAGTTTCACACCGTGCGAGAAACATTGCATTGAATATTTTGTAAGGGTGGGGCTTGTAAATTTCCTTTTTTTCGAAAGCGGTAAGTAAGTGTTTTGGAACTGGTCAGGTCAAGAATCTGTAATTGCGGAGCTAATTAAGCTCAAACAAGAATATTTGGAGGTTGAAAAAATTAACAATAGGTTATATATTTGTA
ATTCTCAGGTTCATTTGATCATTCGGAATGATATTTAACAATAGCAGAGGGATGGAGTGTTTACCCGAAACTTTGGACTCTGAAATTTTCAAACAATTAAATCCAGAAATCAGATATATCTACCAATACTTGTTTTCCTCTCCAACTTCAACACTAAGTTGATCATAGAAACGATCTATCAATACTTTAGCATACGCTAC
TAAAAATCTCATGATCAAACATTTT
>TRINITY_DN100298_c0_g1_i4 from sample A5 / Example unspliced isoform:TGACAATAGTAATTTTTTCAAACTAAAGATTTTAGTTGCCGATTTTCCCTGCCTCGACTTTGCTATAAAGTTTAGCCCGCCATTTCACAATTCGAATATCTGCTTGCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAG
TTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATTAAGCAAAGAAAGTCCATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGgtaatacgctctgtgg
aggggttcagaatattacattttgtcttattcatgcaatttttgctctagaacctagctaatatatgcaattacctgtagaatgatgattcctaatttaacgcttatatgatttccagACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGA
AGATTATCTGTTTCGTCAAAAAATGCAGTTCCAGTTTCAAAAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCA
GGGCCCATTGCCTAAGAGCCAAGCCAAGGCTACTGCTTCAAGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGC
ATGCCATTTCTCTTGGGTTTTTCAGACTAGCACTGGAATCTAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATA
GAAGCTACAGGTGAAGGATCATTTTCTGAGTGCAAGGGATTACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGTCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGAC
GGGTTCAAAACTAGAGGTCCTTTCTAACAAGGCTTGCTCGGCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAA
ATGCTACTCGAAAGCGGACTACATTGATACCTGTACCTGGCATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCC
AAGAAAGGCGCTGCCACTAGTGACTTTCTTCATTCAGATCAACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGAATTTGTTGAAAATCTGGAAACTTCACCAAGTCATGCAACTTTACCACTCAGTGA
CTTTGATATTCAAAACATGAGTGTGGACACATTGATGGAGGAAGTAGTTTCATGTATAGTGTCAAGTATGGATGATCGCACTGATTCCCCAGATCAGGGATCTGTTAAATCTTCGGATTATCAGAATATTGATGCGAGTTGTGTCGGCGAGAGTAGTGCAGAAGTATTGCATAGCTCAGATATTAGCACCACTAGCAAGA
GTTTTGGCGATGCCCATGTTAATACCACTGGTTTTAGTTTCGCTCAAAACATCGACATGGCTGCTAGAAATAGTGACAATTTGGATGATAGTCCCAATTCGAAGGATGGATATGCGGAAGAAACAGATGAAACTTTGTCATTTTTGAAGGAAAAAGGTGAAAAAGAAGACAATAGTACTACAGATACTGTACAGCAGGAT
AAGACAAGACATGACATACTTGAGGATAATCAAAGCAGGGTTGTGAAAGGTAAACCTGAACTCGATATAACTAACTGTGGATCTCACGGGAGTATAGCAATCACTGGAAAAGGAAGCCCTAAAAAGGATCTGCCACATGAAATTCTTGCCATTCTGAAGAAAGAAAATACACTTAATGAGTCTTGCGAAGTGCCTTTAAC
TGAGGGTGAAAGCAGAGATACTCTTGTCAAAGAGGTGATGTGGCGGAAGGACAAATCCAACGAGGGAAGTAAAAGCCATTCGCATAATACATGTGCTACTCCCGGAACGGTCAGACGTTCATCGAGGCTCAGAGATCGGAAAAACACTTGAGTCACTAATTAGGTTTATTGGGTTTTAGTTAAATACAGATTACTTTGAA
AATTATCAGCAGTATCTAGCTCTATATTCGCTATTGAATTCAGATTTTTGAATTGTAACATGTAGCACGTTACCTGTAAGTCCATAGCTGCTTGCTATCAGTTAAAGCATTTGAAGTAACAATGAGCGGGTACCAGAATCCAGTTTCACACCGTGCGAGAAACATTGCATTGAATATTTTGTAAGGGTGGGGCTTGTAAA
TTTCCTTTTTTTCGAAAGCGGTAAGTAAGTGTTTTGGAACTGGTCAGGTCAAGAATCTGTAATTGCGGAGCTAATTAAGCTCAAACAAGAATATTTGGAGGTTGAAAAAATTAACAATAGGTTATATATTTGTAATTCTCAGGTTCATTTGATCATTCGGAATGATATTTAACAATAGCAGAGGGATGGAGTGTTTACCC
GAAACTTTGGACTCTGAAATTTTCAAACAATTAAATCCAGAAATCAGATATATCTACCAATACTTGTTTTCCTCTCCAACTTCAACACTAAGTTGATCATAGAAACGATCTATCAATACTTTAGCATACGCTACTAAAAATCTCATGATCAAACATTTT
Intron 5 GTTTATTGGG ... TAACATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.92 | 34 | 87 | 57 |
| A2 | 55.86 | 49 | 70 | 54 |
| A3 | 68.09 | 30 | 66 | 62 |
| A4 | 68.75 | 10 | 24 | 20 |
| A5 | 62.5 | 9 | 13 | 17 |
| A6 | 61.5 | 82 | 157 | 105 |
| A7 | 62.03 | 176 | 337 | 238 |
| A8 | 62.55 | 294 | 514 | 468 |
| A9 | 62.53 | 175 | 295 | 289 |
| A10 | 65.4 | 109 | 237 | 175 |
>TRINITY_DN112729_c0_g1_i2 from sample A1 / Example spliced isoformCTTGCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAGTTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATTAAGCAAAGAA
AGTCCATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGCAGTTCCAGTT
TCAAAAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCAAGGCTACTGC
TTCAAGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGACTAGCACTGG
AATCTAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTCTGAGTGCAAG
GGATTACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGCCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTAACAAGGCTTG
CTCGGCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTGATACCTGTAC
CTGGCATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTTTCTTCATTCA
GATCAACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGAATTTGTTGAAAATCTGGAAACTTCACCAAGTCATGCAACTTTACCACTCAGTGACTTTGATATTCAAAACATGAGTGTGGACACATTGAT
GGAGGAAGTAGTTTCATGTATAGTGTCAAGTATGGATGATCGCACTGATTCCCCAGATCAGGGATCTGTTAAATCTTCGGATTATCAGAATATTGATGCGAGTTGTGTCGGCGAGAGTAGTGCAGAAGTATTGCATAGCTCAGATATTAGCACCACTAGCAAGAGTTTTGGCGATGCCCATGTTAATACCACTGGTTTTA
GTTTCGCTCAAAACATCGACATGGCTGCTAGAAATAGTGACAATTTGGATGATAGTCCCAATTCGAAGGATGGATATGCGGAAGAAACAGATGAAACTTTGTCATTTTTGAAGGAAAAAGGTGAAAAAGAAGACAATAGTACTACAGATACTGTACAGCAGGATAAGACAAGACATGACATACTTGAGGATAATCAAAGC
AGGGTTGTGAAAGGTAAACCTGAACTCGATATAACTAACTGTGGATCTCACGGGAGTATAGCAATCACTGGAAAAGGAAGCCCTAAAAAGGATCTGCCACATGAAATTCTTGCCATTCTGAAGAAAGAAAATACACTTAATGAGTCTTGCGAAGTGCCTTTAACTGAGGGTGAAAGCAGAGATACTCTTGTCAAAGAGGT
GATGTGGCGGAAGGACAAATCCAACGAGGGAAGTAAAAGCCATTCGCATAATACATGTGCTACTCCCGGAACGGTCAGACGTTCATCGAGGCTCAGAGATCGGAAAAACACTTGAGTCACTAATTAGCACGTTACCTGTAAGTCCATAGCTGCTTGCTATCAGTTAAAGCATTTGAAGTAACAATGAGCGGGTACCAGAA
TCCAGTTTCACACCGTGCGAGAAACATTGCATTGAATATTTTGTAAGGGTGGGGCTTGTAAATTTCCTTTTTTTCGAAAGCGGTAAGTAAGTGTTTTGGAACTGGTCAGGTCAAGAATCTGTAATTGCGGAGCTAATTAAGCTCAAACAAGAATATTTGGAGGTTGAAAAAATTAACAATAGGTTATATATTTGTAATTC
TCAGGTTCATTTGATCATTCGGAATGATATTTAACAATAGCAGAGGGATGGAGTGTTTACCCGAAACTTTGGACTCTGAAATTTTCAAACAATTAAATCCAGAAATCAGATATATCTACCAATACTTGTTTTCCA
>TRINITY_DN112729_c0_g1_i1 from sample A1 / Example unspliced isoform:CTTGCTCGTTAATAATCCTTCATCCCATTCTACCTTCATTGGCATTCAAAGCTTTTAAATTTTTATGCTCTGGATTCCCTTGTTGTGTGTCGTCGAAGTTTGAAGTTGAAGTTGGGGCAGATCCGATAGGTGAATAATCTCCTGAATGGAGCCGTCCAGAGATCATCCCACGCCTTATCCAGGTAAAATTAAGCAAAGAA
AGTCCATCAGGCAATCTATCAAAGAGCAAGAAAACAAGACGTTGACTGAGATAAATGATCTGATGACTACCACTACAAAAAGACAGAAGCACATTTTAAGCATCAGTAAGAGTGTAAACAATTTGGACTTGTCGGCAAAAGACAAACCTACAAAGTCCATCAGAAGATTATCTGTTTCGTCAAAAAATGCAGTTCCAGTT
TCAAAAACTGAGAGTAAAGATATACGCTTTGCAGTATTGGAGAACAAATCTACTGCCTCAAAATCATCTCCACTTAATGGAGCTGCTTTACTGAAACCTGGGAGAACTTTGGAAGTTGAATCCAAAGTAAAACCCTCTACAAAAGCACTTTCAGTTTCCTTTCAGGGCCCATTGCCTAAGAGCCAAGCCAAGGCTACTGC
TTCAAGCAAGGATGTATTATTAACAACCCCTGGATCGAACAAGTCTTCCATCTCAACCACACCTTTGGAGGATTCCAACCACGGACAAAGAAGGAGATTTAACACATTAATGACTTCCACATACTGGCTGTCCCAGATTAAACTCTCAGAATCTGCAGGAAAGCATGCCATTTCTCTTGGGTTTTTCAGACTAGCACTGG
AATCTAATGCTGAGCCCTTCCAAAGGCTCTGCGATGAGCTAAAAGTATATGCCAAAAAGCACCATGTGCTGGAATATGGAGAGGTTGCAAAGGATGTTTTGCTGAGCTATGGTATCTTAGAAGAAATAATGTCAGCTGATATTGATGAGCATTTGGTAGAGATAGAAGCTACAGGTGAAGGATCATTTTCTGAGTGCAAG
GGATTACTGACACCTAGTAATGAAAAATGTTCTATTATTGTCGATTCTTCATTCGAGGAATCTGAAGTTTATGATTCAAAGATAGATGAAGATGTCACAGAGGGAGGTGATAACATCCAAGAAGCTGCCCAAAATGAATTGAATGCATTGTTGCTTGTGCCGACGGGTTCAAAACTAGAGGTCCTTTCTAACAAGGCTTG
CTCGGCAGAAAGGAAAGGTAATAGCAATGATGCATGTGATGCTAATATTCAGCCTTCCATCTTAAGTCAGAAGATTTGCACTGAAAAAGGGAATTTCATTGAAGTAGATGCAGTAGTATGTGTTGCCTCCCCAAATAATACTGAAAGCAATTCAGCCAAAAAAAATGCTACTCGAAAGCGGACTACATTGATACCTGTAC
CTGGCATAAAGTCACAGACATCTGTAAGAAAGTCTTTCAACACTGACTCCGCACAAAAAATTGGCTCTACAAACAAACTCCACTGCACACCTAGACGCTCTCAAACTGTAATTGTTACTACATTAAATGAATCACACAGTAGGAAAAGCTCCAGGCAAGGGGCCAAGAAAGGCGCTGCCACTAGTGACTTTCTTCATTCA
GATCAACCTTCCTCCAGTGACAATGCGAAAGAAGAGGACAAGGATAAACGGGGTTCTCAGAACAGGCAACAACTAAGCAAATGCAAAGACTCCAAGGACTTTCCCAGGGAATTTGTTGAAAATCTGGAAACTTCACCAAGTCATGCAACTTTACCACTCAGTGACTTTGATATTCAAAACATGAGTGTGGACACATTGAT
GGAGGAAGTAGTTTCATGTATAGTGTCAAGTATGGATGATCGCACTGATTCCCCAGATCAGGGATCTGTTAAATCTTCGGATTATCAGAATATTGATGCGAGTTGTGTCGGCGAGAGTAGTGCAGAAGTATTGCATAGCTCAGATATTAGCACCACTAGCAAGAGTTTTGGCGATGCCCATGTTAATACCACTGGTTTTA
GTTTCGCTCAAAACATCGACATGGCTGCTAGAAATAGTGACAATTTGGATGATAGTCCCAATTCGAAGGATGGATATGCGGAAGAAACAGATGAAACTTTGTCATTTTTGAAGGAAAAAGGTGAAAAAGAAGACAATAGTACTACAGATACTGTACAGCAGGATAAGACAAGACATGACATACTTGAGGATAATCAAAGC
AGGGTTGTGAAAGGTAAACCTGAACTCGATATAACTAACTGTGGATCTCACGGGAGTATAGCAATCACTGGAAAAGGAAGCCCTAAAAAGGATCTGCCACATGAAATTCTTGCCATTCTGAAGAAAGAAAATACACTTAATGAGTCTTGCGAAGTGCCTTTAACTGAGGGTGAAAGCAGAGATACTCTTGTCAAAGAGGT
GATGTGGCGGAAGGACAAATCCAACGAGGGAAGTAAAAGCCATTCGCATAATACATGTGCTACTCCCGGAACGGTCAGACGTTCATCGAGGCTCAGAGATCGGAAAAACACTTGAGTCACTAATTAGgtttattgggttttagttaaatacagattactttgaaaattatcagcagtatctagctctatattcgctattg
aattcagatttttgaattgtaacatgtagCACGTTACCTGTAAGTCCATAGCTGCTTGCTATCAGTTAAAGCATTTGAAGTAACAATGAGCGGGTACCAGAATCCAGTTTCACACCGTGCGAGAAACATTGCATTGAATATTTTGTAAGGGTGGGGCTTGTAAATTTCCTTTTTTTCGAAAGCGGTTCATTTGATCATTC
GGAATGATATTTAACAATAGCAGAGGGATGGAGTGTTTACCCGAAACTTTGGACTCTGAAATTTTCAAACAATTAAATCCAGAAATCAGATATATCTACCAATACTTGTTTTCCA