sp|Q9M9G6|CTF64_ARATH ----> Cleavage stimulating factor 64

Intron 1 GTACGATTCC ... TGGTGAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60.12	22.7	29	39.3
A2	45.88	34.3	32	26
A3	66.26	32.3	81	46
A4	51.75	30.7	32	33.3
A5	73.56	13.7	37	38.7
A6	68.85	58	158	98.3
A7	67.38	76.7	179	137.7
A8	64.24	53.3	109	82.7
A9	76.05	53	208	128.7
A10	71.7	66.7	194	142.3

>TRINITY_DN123215_c3_g2_i5 from sample A2 / Example spliced isoform

AGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTG
ATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATCATTTCGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTATGGATTTTGTGAGTA
TAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGATCAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGGTACTGTCTTAATTTCAAAGCTTTTTCACAAGAACAATCCTAGTGTTCAGAGTCCAGATTAATCTTTTGATCTACCTAA
ATGTGCTTTTTACAACTCCCTCATATTTGACTCCTTGAGTACACACATTTCCGATCTTTACCTATGGTCATTCAGGCTATACTTTTCTGTTTCTATTCATAAGTGTTTTGCTATTAAAGCCT

>TRINITY_DN123215_c3_g2_i2 from sample A2 / Example unspliced isoform:

AGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGgtacgattcccctccggtgtcaataattgttgataaattcttcatcctggggataaaatcctcatgctagaat
ccgatgttacttaatacttacgtccatcccgtggtgaacagAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGA
TGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATCATTTCG

Intron 2 GCAAGATAGA ... GGTTTGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	43.92	30	23	24
A2	50.22	18.5	21	15
A3	40.64	28.5	16	23
A4	49.11	21	26.5	14
A5	31.22	28	14.5	11
A6	53.03	62.5	56	85
A7	43.2	112.5	72	99
A8	46.21	74.5	56	72
A9	49.17	89	73	99
A10	50.52	70.5	74	70

>TRINITY_DN123215_c3_g2_i2 from sample A2 / Example spliced isoform

AGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGGTACGATTCCCCTCCGGTGTCAATAATTGTTGATAAATTCTTCATCCTGGGGATAAAATCCTCATGCTAGAAT
CCGATGTTACTTAATACTTACGTCCATCCCGTGGTGAACAGAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGA
TGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATCATTTCG

>TRINITY_DN123215_c3_g2_i1 from sample A2 / Example unspliced isoform:

AGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTG
ATTCATCAGTTGCAGTTCGAAGgcaagatagaaagccggcatccatagcagttgcattcattttttattccacggggggcaggcatatggatattttggttaggcagattaggttgtcaatccggtgaaaatgcactagcaatcttatatcttttgatggtttggcagAGAAGCTGTTAATCATGGCCACCCCACAACAC
CGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATCATTTCGGTGCGTTGAATTGCATTATAAAGGATAACTTGTTTCAGTTTACGTTTTGCTTGTCACTCAAAAGATGGATTCCTTGTCCACTTTCTAATAAAATAGCTGTCAGTTTAT
TAACAAGATAAGGGTGCCTTTGTGTGATGTTTTCCAATTTATTTGCATAAGCCTTGTGCATTCTAAATTTATAGATGGTCTGAAAATGTATATTTTGGTCCTTGAATTACTTTTGCCAGTGACAGCACCC