sp|P92964|SRS31_ARATH ----> Serine/arginine-rich splicing factor RS31
Intron 1 GTAATAAACA ... TTTGGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.45 | 49 | 70 | 15 |
| A2 | 52.07 | 29 | 50 | 13 |
| A3 | 35.35 | 64 | 53 | 17 |
| A4 | 49.07 | 41 | 60 | 19 |
| A5 | 38.64 | 27 | 19 | 15 |
| A6 | 26.61 | 40 | 20 | 9 |
| A7 | 22.81 | 88 | 36 | 16 |
| A8 | 39.82 | 34 | 26 | 19 |
| A9 | 30 | 70 | 41 | 19 |
| A10 | 20.78 | 101 | 39 | 14 |
>TRINITY_DN125675_c3_g1_i12 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGA
TATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTG
AGACCATTTAATACAACATGCAAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCA
ACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i4 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTT
AGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGgtaataaacagcattatattcatattcatattcaatatctatttgtttatctctcatgtctttgtaatgatatatatacgctgaaacaca
tgtttacctgagaatattttgtcattcagatggctttggttgctaatggcataaacaatatagatgctatctgtactttgtcaaaaccctaaacttgttatcagttccttttcctaagctgtttaaacccggttaatgtatgcctgaacaatttatttctgtatttagaacattcttcatattcttgccatctcctctga
aaatttctatctataattagaaaacctaaaatggtcttctcagttcatcctgaaataagatgtttttgcgttggaaaccataggaggatttttcagtttgattttcgaaggcgtaaaagtaccctgtaaagtttcaattatgcatgatctattgttctcagagtggtcagtgttttgggtgtttccgatgtacgcttcaa
catccatccgtcattaatgtgcgatctgaaaattgtggttacggtagcaaatcggaaggaaatatcaagtatctaacaaaatacagaggcttactgttaaaatccttggtggcagagaagaagttgcaactattatcctcattggaatatagtttgtaaacaagatttacttccctaatcatgttggatgcatggttcag
tcttcattctagctggtaatgcgtaacctctgtggttcatatccaaggctgcaagctaagtttaaaacagcatatttgaaatgtaggcccctgtactcaaaagtttctttggcgcagGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGG
ATCGGATTCTAGCCTTGTTCGGCAAAGTCGATATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGAC
CCTACAGCCACTTATGGATTAGACTTACCTGAGACCATTTAATACAACATGCAAGGTTTGTGCTTGATGCCCCCTAATGCAAGTCTCTACAGCAATGAGTAACAGGTGCTGTATTTTGTTCTTTGTCAGAGCCTGTATATGCAATTAATTGCACCCGAGTTTCCTGCAAATGTGGTTGCAATTCGTTTTTTTTCTTTATT
GAATCTCATTTGTTTGTATAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGGTTTTTCCTTTTGGTTTTAAATATGCATTGGGTTATGCTTGTTTTCTTTGTAGGCTTGACATATCC
AGGAAAGGCTTTAATAGATTATGTTTTCAGATACAAGAATTGAGGCAACTGCTATTAATACTATGCCAATATAAGACTTTATCGTTGTCTTTGAAAATTCCTACAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACT
CATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
Intron 2 GTTTGTGCTT ... GTTTGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.34 | 23 | 9 | 12 |
| A2 | 26.83 | 15 | 5 | 6 |
| A3 | 24.32 | 28 | 3 | 15 |
| A4 | 30 | 28 | 10 | 14 |
| A5 | 36.36 | 7 | 5 | 3 |
| A6 | 15.15 | 28 | 5 | 5 |
| A7 | 20.86 | 55 | 22 | 7 |
| A8 | 30.83 | 46 | 13 | 28 |
| A9 | 22.11 | 37 | 8 | 13 |
| A10 | 13.87 | 59 | 12 | 7 |
>TRINITY_DN125675_c3_g1_i12 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGA
TATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTG
AGACCATTTAATACAACATGCAAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCA
ACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i4 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTT
AGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGTAATAAACAGCATTATATTCATATTCATATTCAATATCTATTTGTTTATCTCTCATGTCTTTGTAATGATATATATACGCTGAAACACA
TGTTTACCTGAGAATATTTTGTCATTCAGATGGCTTTGGTTGCTAATGGCATAAACAATATAGATGCTATCTGTACTTTGTCAAAACCCTAAACTTGTTATCAGTTCCTTTTCCTAAGCTGTTTAAACCCGGTTAATGTATGCCTGAACAATTTATTTCTGTATTTAGAACATTCTTCATATTCTTGCCATCTCCTCTGA
AAATTTCTATCTATAATTAGAAAACCTAAAATGGTCTTCTCAGTTCATCCTGAAATAAGATGTTTTTGCGTTGGAAACCATAGGAGGATTTTTCAGTTTGATTTTCGAAGGCGTAAAAGTACCCTGTAAAGTTTCAATTATGCATGATCTATTGTTCTCAGAGTGGTCAGTGTTTTGGGTGTTTCCGATGTACGCTTCAA
CATCCATCCGTCATTAATGTGCGATCTGAAAATTGTGGTTACGGTAGCAAATCGGAAGGAAATATCAAGTATCTAACAAAATACAGAGGCTTACTGTTAAAATCCTTGGTGGCAGAGAAGAAGTTGCAACTATTATCCTCATTGGAATATAGTTTGTAAACAAGATTTACTTCCCTAATCATGTTGGATGCATGGTTCAG
TCTTCATTCTAGCTGGTAATGCGTAACCTCTGTGGTTCATATCCAAGGCTGCAAGCTAAGTTTAAAACAGCATATTTGAAATGTAGGCCCCTGTACTCAAAAGTTTCTTTGGCGCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGG
ATCGGATTCTAGCCTTGTTCGGCAAAGTCGATATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGAC
CCTACAGCCACTTATGGATTAGACTTACCTGAGACCATTTAATACAACATGCAAGgtttgtgcttgatgccccctaatgcaagtctctacagcaatgagtaacaggtgctgtattttgttctttgtcagagcctgtatatgcaattaattgcacccgagtttcctgcaaatgtggttgcaattcgttttttttctttatt
gaatctcatttgtttgtatagGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGGTTTTTCCTTTTGGTTTTAAATATGCATTGGGTTATGCTTGTTTTCTTTGTAGGCTTGACATATCC
AGGAAAGGCTTTAATAGATTATGTTTTCAGATACAAGAATTGAGGCAACTGCTATTAATACTATGCCAATATAAGACTTTATCGTTGTCTTTGAAAATTCCTACAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACT
CATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
Intron 3 GTTTTTCCTT ... ATTCCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.35 | 82 | 13.4 | 51 |
| A2 | 30.11 | 65 | 4.6 | 28 |
| A3 | 24.53 | 86.2 | 15.8 | 28 |
| A4 | 35.63 | 56 | 8.6 | 31 |
| A5 | 39.29 | 34 | 11 | 22 |
| A6 | 22.17 | 112.4 | 5.4 | 32 |
| A7 | 31.98 | 185.5 | 2.8 | 87.2 |
| A8 | 23.18 | 132.6 | 11 | 40 |
| A9 | 25.74 | 150 | 9 | 52 |
| A10 | 32.17 | 122.3 | 13.2 | 58 |
>TRINITY_DN125675_c3_g1_i12 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGA
TATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTG
AGACCATTTAATACAACATGCAAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCA
ACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i2 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGA
TATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTG
AGACCATTTAATACAACATGCAAGGTTTGTGCTTGATGCCCCCTAATGCAAGTCTCTACAGCAATGAGTAACAGGTGCTGTATTTTGTTCTTTGTCAGAGCCTGTATATGCAATTAATTGCACCCGAGTTTCCTGCAAATGTGGTTGCAATTCGTTTTTTTTCTTTATTGAATCTCATTTGTTTGTATAGGTTACGCTTT
CATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGgtttttccttttggttttaaatatgcattgggttatgcttgttttctttgtaggcttgacatatccaggaaaggctttaatagattatgttttcaga
tacaagaattgaggcaactgctattaatactatgccaatataagactttatcgttgtctttgaaaattcctacagCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAG
GCATTTTGAGCCCTATGGCAAGGT
Intron 4 GTAACTGCCA ... TTTGACGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.49 | 57 | 36 | 3 |
| A2 | 21.47 | 64 | 19 | 16 |
| A3 | 21.71 | 110 | 45 | 16 |
| A4 | 32.93 | 56 | 36 | 19 |
| A5 | 24.56 | 43 | 17 | 11 |
| A6 | 22.94 | 84 | 27 | 23 |
| A7 | 21.4 | 202 | 64 | 46 |
| A8 | 26.32 | 91 | 29 | 36 |
| A9 | 14.94 | 131 | 25 | 21 |
| A10 | 16.35 | 197 | 44 | 33 |
>TRINITY_DN44250_c0_g1_i3 from sample A9 / Example spliced isoformGTTAAGTGCTGGCCACGAGCAAGTCTTCTATATTTAAATGGGAATATGCAATAGTTCACTCGTGTGGCATTGAACTTCATCCTTGGCTAGTCTGTGTGGCGAACCATCAATACGGATCGATTCGTTACGCCAAGCAATATCTTCTCTCGATTCGATCGTTTTGATTGATTGATTGATTTATTTAGTTTCCAGAAACCCTT
TTTTAAGTATACCGGCGGTTAGTGAAGAAAAGTTTGCGATTAGCAATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGTTCGACAGTCAGAGATTGAGCGCTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTCAAGAGCATCCATGCTCTTCCTGGAGATCCTGTGCATATTCT
TTCATCATGCCATGGATCAGCTAATAGCCTTGTTCAGCAAAGTTGATATACAAATGACATCTTGCATTTTTCTCACGACACCATTACTTTTCAATGTTCATCCCTCCCAAGCCATTCTAAGTCTTCATTCAGGCTCAAGCATTTCAAGAGATAGAATCCATGACACATCACTGCAATCAGAATGGGGCATAACTGGTGAC
GGCACTTATCTGATGGATGACCTTACAGCCACTTATGGATTAGATTTACCTGATACCATTTAGTACAACATGCAACGTTTGTGCTTTCTGTCTCCTAATGCAGCCAGTATTTACGACAATAAGTAACAGGTTATGCTTTTGTCTATATGGAAGATGAGCGTGATGCAGAGGATGCAATCCGAGCTCTTGACAAGACAGAA
TTTGGCAGGCAAAGGCGTCGGCTAACTGTAGAGTGGACAAAGCATGCTGAACGAGGTCTTCGCCGATCTGAAGATGGCAGAAGATCTGTTACAGGTTTGAAGCCAACAAAAACATTATTTGTGATAAA
>TRINITY_DN44250_c0_g1_i6 from sample A9 / Example unspliced isoform:GTTAAGTGCTGGCCACGAGCAAGTCTTCTATATTTAAATGGGAATATGCAATAGTTCACTCGTGTGGCATTGAACTTCATCCTTGGCTAGTCTGTGTGGCGAACCATCAATACGGATCGATTCGTTACGCCAAGCAATATCTTCTCTCGATTCGATCGTTTTGATTGATTGATTGATTTATTTAGTTTCCAGAAACCCTT
TTTTAAGTATACCGGCGGTTAGTGAAGAAAAGTTTGCGATTAGCAATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGTTCGACAGTCAGAGATTGAGCGCTTGTTTGGCAAATATGGAAGAGTCGATAGGGTTGATATGAAATCAGgtaactgccatcatagtattcatattcgcacccaatatctatcgatata
tctagcatgtatttataatggtatattgctgcaacagatgtctgtaaactggtttagctgacaatattttgtcattcagatggctttggttcccaatggtataaacactgtacaaaccatccgtagtttgtcaaaccccaaacgtgtttgttctggcaggctgtttaaacctggctcaaatcgatctgaacaaataaata
aatcctgtttagtcttctagtctctgaagaatttctatctatatttagaaaactttaaatgatcttgtaagttcaatcagaaacgaatatttttaagtaggaaacctaagaggatttatcagatttgttttgtaaaatgtaaaagaccctgtgaagtctgaattgttcatggaccattgttctcaggagagttgagtgat
ttggttttccaacaatgaacgcttccatacccttacctgattaatgggtgaagccagatttgtgcttccaatggcaaactattgtcctcattggatggaaatatcaactatctaaaggaatgcagacttactgtaaaagatgcccggtggcagaagttctagctccagctattattcttaatggaatatagtatgtcaac
aaaattattttgattttagaattggaaatcatgtcgaatgcatgattttcagtcttctttccagctggtaatgcgtaacggtaacctctatggttcatatccaaggttacaagcaaagtttaagaagcaacatttttgaaatgtaggcctctatactcaaaaatttctttgacgcagGAATATTCAAGAGCATCCATGCT
CTTCCTGGAGATCCTGTGCATATTCTTTCATCATGCCATGGATCAGCTAATAGCCTTGTTCAGCAAAGTTGATATACAAATGACATCTTGCATTTTTCTCACGACACCATTACTTTTCAATGTTCATCCCTCCCAAGCCATTCTAAGTCTTCATTCAGGCTCAAGCATTTCAAGAGATAGAATCCATGACACATCACTGC
AATCAGAATGGGGCATAACTGGTGACGGCACTTATCTGATGGATGACCTTACAGCCACTTATGGATTAGATTTACCTGATACCATTTAGTACAACATGCAACGTTTGTGCTTTCTGTCTCCTAATGCAGCCAGTATTTACGACAATAAGTAACAGGTTATGCTTTTGTCTATATGGAAGATGAGCGTGATGCAGAGGATG
CAATCCGAGCTCTTGACAAGACAGAATTTGGCAGGCAAAGGCGTCGGCTAACTGTAGAGTGGACAAAGCATGCTGAACGAGGTCTTCGCCGATCTGAAGATGGCAGAAGATCTGTTACAGGTTTGAAGCCAACAAAAACATTATTTGTGATAAA
Intron 5 GTTGTCTTCA ... ATTCCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.09 | 206 | 6 | 69 |
| A2 | 15.6 | 184 | 1 | 34 |
| A3 | 21.59 | 247 | 0 | 68 |
| A4 | 27.71 | 167 | 0 | 64 |
| A5 | 23.08 | 90 | 0 | 27 |
| A6 | 19.9 | 664 | 1 | 165 |
| A7 | 17.81 | 877 | 0 | 190 |
| A8 | 20.52 | 674 | 1 | 174 |
| A9 | 18.04 | 827 | 0 | 182 |
| A10 | 16.94 | 652 | 0 | 133 |
>TRINITY_DN44250_c0_g1_i8 from sample A9 / Example spliced isoformCAAAATTTCAGAGCTTAAGAGTTGTAGCCAGAATTTTTAAAAATTCTGTCAAATTTTTTCAAGATAGTGCAAAATGCAAATTGTAAAAAATCTGTCAAATTTTTTCAAGATAATGCAAATTGCAAATGGTAGAACTTTTACACTACACAATTATTATATAGAGCCCTCGTAAGGTTATGACCTTCAAATTTACTGTTATT
ATTTTGTTTTGTTCACATGTCACGGCTAATAGAAAGTTTATAAAATACAAAATTAGATTAAATTATTAAGAGCTCACTGTTTGCTCCTTCAACACCCCCCTCAACCCCTAACACACACCTCATACGAAAGTTCCGGACAACTGCTAAAGCTCTCCACATCTTCAAATTGTTTTTTCTTGCTTGATGAGTGCTAGAAGTCT
GGCGTTTTCAGGTGAGAGCTGTATCTGGTGTGAAAACTTGACTTCTGATCCAAAATTGGACGTGTCGTTCTGCTTTTGGCACTCCTCAATCTTGAGAGTCCCTCCGTCATCCGCTTGACCTTTATCAAGGATTTTCTTTCGCCTCATGTTAACTCCCAACCCATTGTGATATATGGGTAATCAATCTCAATGCTTTCTGG
TTCTCTAGGGAAGTAACCTGGTTACATGTTGCATATTTAACTTTACTGCAACAACAATGTTTTTTTGCCTCTCTCTATATTCCCATTCTTTACAGTCATCCTTTTACAGCACAACTTTCAACTTTATACTGTGCTCACTGTGCCCACAATTGGATTGGATTTTGATGGGTTAATTGAGTCGTCACGGTCCGAAGACTTAG
ACAAACAATTTTCACTTTGTTTGCTGTACCTAGGTGGCTTGAAAAGAACCATTTCTAGAGGGGGCAACCTCTTTTTTTAATGTTCTGGGCTGGCTTGAAAAGAACCATTTTATACATGCCAAAAATACTGCTTGCTTTACACTTAAATGCCATTTCCAGCCTAGAAAACCTTCATTATTGAGCTGGTACCAAGCCCAATA
CCATATTAACCTGAGTTATATCAACCAGACCCTTATTGTGAACAAAACATGAAACACTCATATAATTTCAAGGACTTCTTTTAATATTTTCTCCAAACACAGATTTTAAAGTGATTTATCTTTTGGATTTTGGATACTTTCAACTTTCTAAGATTGAAACTTTAAAATTTTAAATAGAATATTTGCTCTTTTATAAATAT
ATTTGAACTAAATTTTATCGTGCTTTTCTAATGCCTCTCTTCTTATTAGTGGGACGATTTCTCTCTTCATGTCCCAGGACAGTTTCTCTTTTTGATTCTTTGACTCAGGACCAGTTTCGTTCTGATACCATGTAGATTTTTTAGGGTGCACGTGCAAAATATTAACATGATCAACATAGAGAGAGTAATACATGTCTCAA
TATGTTAATGCTGCAACAAACACATCACCAGGAGCCCAACGTAGGCAACACACATACACATACCACCCTTTCAAAGTTTAATGATCTCATTACATTATTATATAGCACCCTCATACGGTTATGGTGGTTTAAACTTTAACTACCCAACCATCATAGTAACTTTTATGATCTCATTTGGTCATAAGGTTATGGTGTTTTAA
ACTTTAACTACCAACCACCACAGTAGCTTTTATGGTCTCATTTGGTCACATGTCACACTAACAGAAATGATAAAATTTCCATAAGAGCTCATTGTTTGCTCCTCCACCTCGTCTTCTTATCTCCTCTAAAGAGTCTCTGGAGTATGTATCTAGAAACCCTTAACCGGTCTTCTCAGTTCATCAGATTCATTCCAGATGTA
GAAGTCCTTGCAAAATCCAAATTATGCATGAACTATTGTTTTAAGGTATGTGAGTGTTTTGGGTTCCAACAATGTACGCTTCAAAACCCATACCTTGTCAATGTATGAGCTCACAATTATGCTTCAATTTTATCCATTGTCTTCATTGAATGGAAATATCAATTATCTAACAAAATATAGAGAGTTGCTGTTGAACATCC
TTGGTGGCAGAGAAGATGCTGCAGCTATTATTCTTATTATGTAAACGAAATTTACTTTATTTTTTATTAGGGAAATCATGTTGGATGCAAGGACTTCAGTCTTCATTATAGTTGGTAATGCATAACAGTAACCTCTATGGTTCATATCCAAGGTTACAAGCAAAGTTTAAGAAGCAACATTTTTGAAATGTAGGCCTCTA
TACTCAAAAATTTCTTTGACGCAGGAATATTCAAGAGCATCCATGCTCTTCCTGGAGATCCTGTGCATATTCTTTCATCATGCCATGGATCAGCTAATAGCCTTGTTCAGCAAAGTTGATATACAAATGACATCTTGCATTTTTCTCACGACACCATTACTTTTCAATGTTCATCCCTCCCAAGCCATTCTAAGTCTTCA
TTCAGGCTCAAGCATTTCAAGAGATAGAATCCATGACACATCACTGCAATCAGAATGGGGCATAACTGGTGACGGCACTTATCTGATGGATGACCTTACAGCCACTTATGGATTAGATTTACCTGATACCATTTAGTACAACATGCAACGTTTGTGCTTTCTGTCTCCTAATGCAGCCAGTATTTACGACAATAAGTAAC
AGGTGTTGTATTTTTTTTTCTTTGTCGTAGCCTTATATATGAAATCATTCGCCCCAGCGCACACTGCAAATGTGATTGCAATCCAATATTTTGTTCTTTATTGAATCTCTTGTTTCTATAGGTTATGCTTTTGTCTATATGGAAGATGAGCGTGATGCAGAGGATGCAATCCGAGGGCTTGACAATACGGAATTTGGCAG
GCAAAGACGCCGGCTTACTGTAGAGTGGACAAAGCATGGCAATCGAGGTTTTCGCCAATCTGAAGATGGCAGGAGGTCTGATACAGGTTTGAAGCCATCAAAGACTCTATTTGTGATAAACTTCGATCCATACAATACCAGAGTCAGGGATCTTGAAAGGCATTTTGAGCCTTATGGTAAGCTGCTAGATGTAAAGATTA
GAAGGAATTTTGCATTTGTCCAGTACGAATCACAAGAAGAAGCAACGAAAGCTCTGGACTCCACCCATATGAGCAAAATGTTCGATAGGGTTATCACAGTGGAATATGCTCAACGTGAGGATCGTGATAGAAGAGGTGGATATTCTAGTCCCATTCGAGGTGGTCGGTATGGCAGAGCTG
>TRINITY_DN44250_c0_g1_i7 from sample A9 / Example unspliced isoform:GGCTTACTGTAGAGTGGACAAAGgttgtcttcatatatatatatatatatattccacatatattactagattgtaaatttgaatctatgaggatttaatttcatgtctttggatacaagaactgagccaattgatattttactactattctaatatgagatatctgctttctctttgaaaattcctacagCATGGCAATC
GAGGTTTTCGCCAATCTGAAGATGGCAGGAGGTCTGATACAGGTTTGAAGCCATCAAAGACTCTATTTGTGATAAACTTCGATCCATACAATACCAGAGTCAGGGATCTTGAAAGGCATTTTGAGCCTTATGGTAAGCTGCTAGATGTAAAGATTAGAAGGAATTTTGCATTTGTCCAGTACGAATCACAAGAAGAAGCA
ACGAAAGCTCTGGACTCCACCCATATGAGCAAAATGTTCGATAGGGTTATCACAGTGGAATATGCTCAACGTGAGGATCGTGATAGAAGAGGTGGATATTCTAGTCCCATTCGAGGTGGTCGGTATGGCAGAGCTG
Intron 6 GTAACTGCCA ... TAAGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.56 | 171 | 36 | 27 |
| A2 | 13.53 | 163 | 19 | 32 |
| A3 | 14.9 | 197 | 45 | 24 |
| A4 | 15.79 | 136 | 36 | 15 |
| A5 | 11.86 | 104 | 17 | 11 |
| A6 | 8.32 | 661 | 27 | 93 |
| A7 | 9.95 | 860 | 64 | 126 |
| A8 | 10.05 | 479 | 29 | 78 |
| A9 | 9.06 | 753 | 25 | 125 |
| A10 | 9.72 | 622 | 44 | 90 |
>TRINITY_DN44250_c0_g1_i5 from sample A9 / Example spliced isoformGTTAAGTGCTGGCCACGAGCAAGTCTTCTATATTTAAATGGGAATATGCAATAGTTCACTCGTGTGGCATTGAACTTCATCCTTGGCTAGTCTGTGTGGCGAACCATCAATACGGATCGATTCGTTACGCCAAGCAATATCTTCTCTCGATTCGATCGTTTTGATTGATTGATTGATTTATTTAGTTTCCAGAAACCCTT
TTTTAAGTATACCGGCGGTTAGTGAAGAAAAGTTTGCGATTAGCAATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGTTCGACAGTCAGAGATTGAGCGCTTGTTTGGCAAATATGGAAGAGTCGATAGGGTTGATATGAAATCAGGTTATGCTTTTGTCTATATGGAAGATGAGCGTGATGCAGAGGATGCAAT
CCGAGCTCTTGACAAGACAGAATTTGGCAGGCAAAGGCGTCGGCTAACTGTAGAGTGGACAAAGCATGCTGAACGAGGTCTTCGCCGATCTGAAGATGGCAGAAGATCTGTTACAGGTTTGAAGCCAACAAAAACATTATTTGTGATAAA
>TRINITY_DN44250_c0_g1_i6 from sample A9 / Example unspliced isoform:GTTAAGTGCTGGCCACGAGCAAGTCTTCTATATTTAAATGGGAATATGCAATAGTTCACTCGTGTGGCATTGAACTTCATCCTTGGCTAGTCTGTGTGGCGAACCATCAATACGGATCGATTCGTTACGCCAAGCAATATCTTCTCTCGATTCGATCGTTTTGATTGATTGATTGATTTATTTAGTTTCCAGAAACCCTT
TTTTAAGTATACCGGCGGTTAGTGAAGAAAAGTTTGCGATTAGCAATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGTTCGACAGTCAGAGATTGAGCGCTTGTTTGGCAAATATGGAAGAGTCGATAGGGTTGATATGAAATCAGgtaactgccatcatagtattcatattcgcacccaatatctatcgatata
tctagcatgtatttataatggtatattgctgcaacagatgtctgtaaactggtttagctgacaatattttgtcattcagatggctttggttcccaatggtataaacactgtacaaaccatccgtagtttgtcaaaccccaaacgtgtttgttctggcaggctgtttaaacctggctcaaatcgatctgaacaaataaata
aatcctgtttagtcttctagtctctgaagaatttctatctatatttagaaaactttaaatgatcttgtaagttcaatcagaaacgaatatttttaagtaggaaacctaagaggatttatcagatttgttttgtaaaatgtaaaagaccctgtgaagtctgaattgttcatggaccattgttctcaggagagttgagtgat
ttggttttccaacaatgaacgcttccatacccttacctgattaatgggtgaagccagatttgtgcttccaatggcaaactattgtcctcattggatggaaatatcaactatctaaaggaatgcagacttactgtaaaagatgcccggtggcagaagttctagctccagctattattcttaatggaatatagtatgtcaac
aaaattattttgattttagaattggaaatcatgtcgaatgcatgattttcagtcttctttccagctggtaatgcgtaacggtaacctctatggttcatatccaaggttacaagcaaagtttaagaagcaacatttttgaaatgtaggcctctatactcaaaaatttctttgacgcaggaatattcaagagcatccatgct
cttcctggagatcctgtgcatattctttcatcatgccatggatcagctaatagccttgttcagcaaagttgatatacaaatgacatcttgcatttttctcacgacaccattacttttcaatgttcatccctcccaagccattctaagtcttcattcaggctcaagcatttcaagagatagaatccatgacacatcactgc
aatcagaatggggcataactggtgacggcacttatctgatggatgaccttacagccacttatggattagatttacctgataccatttagtacaacatgcaacgtttgtgctttctgtctcctaatgcagccagtatttacgacaataagtaacagGTTATGCTTTTGTCTATATGGAAGATGAGCGTGATGCAGAGGATG
CAATCCGAGCTCTTGACAAGACAGAATTTGGCAGGCAAAGGCGTCGGCTAACTGTAGAGTGGACAAAGCATGCTGAACGAGGTCTTCGCCGATCTGAAGATGGCAGAAGATCTGTTACAGGTTTGAAGCCAACAAAAACATTATTTGTGATAAA
Intron 7 GTAATAAACA ... GTTTGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.75 | 83 | 70 | 12 |
| A2 | 36.5 | 87 | 50 | 6 |
| A3 | 29.12 | 129 | 53 | 15 |
| A4 | 36.36 | 105 | 60 | 14 |
| A5 | 28.79 | 47 | 19 | 3 |
| A6 | 6.33 | 296 | 20 | 5 |
| A7 | 10.71 | 300 | 36 | 7 |
| A8 | 14.94 | 148 | 26 | 28 |
| A9 | 15.53 | 223 | 41 | 13 |
| A10 | 16.25 | 201 | 39 | 7 |
>TRINITY_DN125675_c3_g1_i11 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGC
CTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i4 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTT
AGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGgtaataaacagcattatattcatattcatattcaatatctatttgtttatctctcatgtctttgtaatgatatatatacgctgaaacaca
tgtttacctgagaatattttgtcattcagatggctttggttgctaatggcataaacaatatagatgctatctgtactttgtcaaaaccctaaacttgttatcagttccttttcctaagctgtttaaacccggttaatgtatgcctgaacaatttatttctgtatttagaacattcttcatattcttgccatctcctctga
aaatttctatctataattagaaaacctaaaatggtcttctcagttcatcctgaaataagatgtttttgcgttggaaaccataggaggatttttcagtttgattttcgaaggcgtaaaagtaccctgtaaagtttcaattatgcatgatctattgttctcagagtggtcagtgttttgggtgtttccgatgtacgcttcaa
catccatccgtcattaatgtgcgatctgaaaattgtggttacggtagcaaatcggaaggaaatatcaagtatctaacaaaatacagaggcttactgttaaaatccttggtggcagagaagaagttgcaactattatcctcattggaatatagtttgtaaacaagatttacttccctaatcatgttggatgcatggttcag
tcttcattctagctggtaatgcgtaacctctgtggttcatatccaaggctgcaagctaagtttaaaacagcatatttgaaatgtaggcccctgtactcaaaagtttctttggcgcaggaatattgtagagcatccaagctcttcctggagattttgtccatattctttcgtcatgcaatcaatgtttgtctttcgagagg
atcggattctagccttgttcggcaaagtcgatatacaaatgacatcttgcattttttctcacgactccattacttttcataccccccatgccatgttaagtattcagccacgctcaagcatgtccagagataaaatccatgacgcatcactgcaatcacaatggagcgtaactggtgaacgcgcatttctgttcgatgac
cctacagccacttatggattagacttacctgagaccatttaatacaacatgcaaggtttgtgcttgatgccccctaatgcaagtctctacagcaatgagtaacaggtgctgtattttgttctttgtcagagcctgtatatgcaattaattgcacccgagtttcctgcaaatgtggttgcaattcgttttttttctttatt
gaatctcatttgtttgtatagGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGGTTTTTCCTTTTGGTTTTAAATATGCATTGGGTTATGCTTGTTTTCTTTGTAGGCTTGACATATCC
AGGAAAGGCTTTAATAGATTATGTTTTCAGATACAAGAATTGAGGCAACTGCTATTAATACTATGCCAATATAAGACTTTATCGTTGTCTTTGAAAATTCCTACAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACT
CATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
Intron 8 GTAATAAACA ... TGAGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.75 | 83 | 70 | 9 |
| A2 | 36.5 | 87 | 50 | 3 |
| A3 | 29.12 | 129 | 53 | 1 |
| A4 | 36.36 | 105 | 60 | 2 |
| A5 | 28.79 | 47 | 19 | 0 |
| A6 | 6.33 | 296 | 20 | 3 |
| A7 | 10.71 | 300 | 36 | 9 |
| A8 | 14.94 | 148 | 26 | 11 |
| A9 | 15.53 | 223 | 41 | 15 |
| A10 | 16.25 | 201 | 39 | 8 |
>TRINITY_DN125675_c3_g1_i11 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGC
CTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i13 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTT
AGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGgtaataaacagcattatattcatattcatattcaatatctatttgtttatctctcatgtctttgtaatgatatatatacgctgaaacaca
tgtttacctgagaatattttgtcattcagatggctttggttgctaatggcataaacaatatagatgctatctgtactttgtcaaaaccctaaacttgttatcagttccttttcctaagctgtttaaacccggttaatgtatgcctgaacaatttatttctgtatttagaacattcttcatattcttgccatctcctctga
aaatttctatctataattagaaaacctaaaatggtcttctcagttcatcctgaaataagatgtttttgcgttggaaaccataggaggatttttcagtttgattttcgaaggcgtaaaagtaccctgtaaagtttcaattatgcatgatctattgttctcagagtggtcagtgttttgggtgtttccgatgtacgcttcaa
catccatccgtcattaatgtgcgatctgaaaattgtggttacggtagcaaatcggaaggaaatatcaagtatctaacaaaatacagaggcttactgttaaaatccttggtggcagagaagaagttgcaactattatcctcattggaatatagtttgtaaacaagatttacttccctaatcatgttggatgcatggttcag
tcttcattctagctggtaatgcgtaacctctgtggttcatatccaaggctgcaagctaagtttaaaacagcatatttgaaatgtaggcccctgtactcaaaagtttctttggcgcaggaatattgtagagcatccaagctcttcctggagattttgtccatattctttcgtcatgcaatcaatgtttgtctttcgagagg
atcggattctagccttgttcggcaaagtcgatatacaaatgacatcttgcattttttctcacgactccattacttttcataccccccatgccatgttaagtattcagccacgctcaagcatgtccagagataaaatccatgacgcatcactgcaatcacaatggagcgtaactggtgaacgcgcatttctgttcgatgac
cctacagccacttatggattagacttacctgagaccatttaatacaacatgcaaggtttgtgcttgatgccccctaatgcaagtctctacagcaatgagtaacagGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTA
AGTGTGGAGTGGAAAAAG
Intron 9 GTGCTGTATT ... GTTTGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.63 | 9 | 8 | 12 |
| A2 | 60 | 3 | 3 | 6 |
| A3 | 89.47 | 1 | 2 | 15 |
| A4 | 78.95 | 2 | 1 | 14 |
| A5 | 100 | 0 | 3 | 3 |
| A6 | 53.85 | 3 | 2 | 5 |
| A7 | 43.75 | 9 | 7 | 7 |
| A8 | 63.93 | 11 | 11 | 28 |
| A9 | 38.78 | 15 | 6 | 13 |
| A10 | 30.43 | 8 | 0 | 7 |
>TRINITY_DN125675_c3_g1_i13 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTT
AGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGTAATAAACAGCATTATATTCATATTCATATTCAATATCTATTTGTTTATCTCTCATGTCTTTGTAATGATATATATACGCTGAAACACA
TGTTTACCTGAGAATATTTTGTCATTCAGATGGCTTTGGTTGCTAATGGCATAAACAATATAGATGCTATCTGTACTTTGTCAAAACCCTAAACTTGTTATCAGTTCCTTTTCCTAAGCTGTTTAAACCCGGTTAATGTATGCCTGAACAATTTATTTCTGTATTTAGAACATTCTTCATATTCTTGCCATCTCCTCTGA
AAATTTCTATCTATAATTAGAAAACCTAAAATGGTCTTCTCAGTTCATCCTGAAATAAGATGTTTTTGCGTTGGAAACCATAGGAGGATTTTTCAGTTTGATTTTCGAAGGCGTAAAAGTACCCTGTAAAGTTTCAATTATGCATGATCTATTGTTCTCAGAGTGGTCAGTGTTTTGGGTGTTTCCGATGTACGCTTCAA
CATCCATCCGTCATTAATGTGCGATCTGAAAATTGTGGTTACGGTAGCAAATCGGAAGGAAATATCAAGTATCTAACAAAATACAGAGGCTTACTGTTAAAATCCTTGGTGGCAGAGAAGAAGTTGCAACTATTATCCTCATTGGAATATAGTTTGTAAACAAGATTTACTTCCCTAATCATGTTGGATGCATGGTTCAG
TCTTCATTCTAGCTGGTAATGCGTAACCTCTGTGGTTCATATCCAAGGCTGCAAGCTAAGTTTAAAACAGCATATTTGAAATGTAGGCCCCTGTACTCAAAAGTTTCTTTGGCGCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGG
ATCGGATTCTAGCCTTGTTCGGCAAAGTCGATATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGAC
CCTACAGCCACTTATGGATTAGACTTACCTGAGACCATTTAATACAACATGCAAGGTTTGTGCTTGATGCCCCCTAATGCAAGTCTCTACAGCAATGAGTAACAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTA
AGTGTGGAGTGGAAAAAG
>TRINITY_DN125675_c3_g1_i2 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGA
TATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTG
AGACCATTTAATACAACATGCAAGGTTTGTGCTTGATGCCCCCTAATGCAAGTCTCTACAGCAATGAGTAACAGgtgctgtattttgttctttgtcagagcctgtatatgcaattaattgcacccgagtttcctgcaaatgtggttgcaattcgttttttttctttattgaatctcatttgtttgtatagGTTACGCTTT
CATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGGTTTTTCCTTTTGGTTTTAAATATGCATTGGGTTATGCTTGTTTTCTTTGTAGGCTTGACATATCCAGGAAAGGCTTTAATAGATTATGTTTTCAGA
TACAAGAATTGAGGCAACTGCTATTAATACTATGCCAATATAAGACTTTATCGTTGTCTTTGAAAATTCCTACAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAG
GCATTTTGAGCCCTATGGCAAGGT
Intron 10 GTAAGCCATC ... AACCCTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 28 | 5 | 9 |
| A2 | 15.22 | 39 | 6 | 8 |
| A3 | 11.86 | 26 | 3 | 4 |
| A4 | 15.79 | 32 | 1 | 11 |
| A5 | 23.08 | 20 | 2 | 10 |
| A6 | 15.29 | 36 | 5 | 8 |
| A7 | 9.3 | 39 | 2 | 6 |
| A8 | 11.11 | 16 | 1 | 3 |
| A9 | 10.53 | 34 | 1 | 7 |
| A10 | 7.32 | 38 | 1 | 5 |
>TRINITY_DN125675_c3_g1_i8 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTT
AGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGTAATAAACAGCATTATATTCATATTCATATTCAATATCTATTTGTTTATCTCTCATGTCTTTGTAATGATATATATACGCTGAAACACA
TGTTTACCTGAGAATATTTTGTCATTCAGATGGCTTTGGTTGCTAATGGCATAAACAATATAGATGCTATCTGTACTTTGTCAAAACCCTAAACTTGTTATCAGTTCCTTTTCCTAAGCTGTTTAAACCCGGTTAATGTATGCCTGAACAATTTATTTCTGTATTTAGAACATTCTTCATATTCTTGCCATCTCCTCTGA
AAATTTCTATCTATAATTAGAAAACCTAAAATGGTCTTCTCAGTTCATCCTGAAATAAGATGTTTTTGCGTTGGAAACCATAGGAGGATTTTTCAGTTTGATTTTCGAAGGCGTAAAAGTACCCTGTAAAGTTTCAATTATGCATGATCTATTGTTCTCAGAGTGGTCAGTGTTTTGGGTGTTTCCGATGTACGCTTCAA
CATCCATCCGTCATTAATGTGCGATCTGAAAATTGTGGTTACGGTAGCAAATCGGAAGGAAATATCAAGTATCTAACAAAATACAGAGGCTTACTGTTAAAATCCTTGGTGGCAGAGAAGAAGTTGCAACTATTATCCTCATTGGAATATAGTTTGTAAACAAGATTTACTTCCCTAATCATGTTGGATGCATGGTTCAG
TCTTCATTCTAGCTGGTAATGCGTAACCTCTGTGGTTCATATCCAAGGCTGCAAGCTAAGTTTAAAACAGCATATTTGAAATGTAGGCCCCTGTACTCAAAAGTTTCTTTGGCGCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGG
ATCGGATTCTAGCCTTGTTCGGCAAAGTCGATATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGAC
CCTACAGCCACTTATGGATTAGACTTACCTGAGACCATTTAATACAACATGCAAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGA
TGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i7 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGgtaagccatccttcagtcttacggatttttgggtatgactcttcagatttcttccatgcatattcgccacat
tccctctgtaattgtcatttgatcccttgctgaaaccctgaagGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGA
GTCGAAAGGGTTGATATGAAATCAGGTAATAAACAGCATTATATTCATATTCATATTCAATATCTATTTGTTTATCTCTCATGTCTTTGTAATGATATATATACGCTGAAACACATGTTTACCTGAGAATATTTTGTCATTCAGATGGCTTTGGTTGCTAATGGCATAAACAATATAGATGCTATCTGTACTTTGTCAAA
ACCCTAAACTTGTTATCAGTTCCTTTTCCTAAGCTGTTTAAACCCGGTTAATGTATGCCTGAACAATTTATTTCTGTATTTAGAACATTCTTCATATTCTTGCCATCTCCTCTGAAAATTTCTATCTATAATTAGAAAACCTAAAATGGTCTTCTCAGTTCATCCTGAAATAAGATGTTTTTGCGTTGGAAACCATAGGA
GGATTTTTCAGTTTGATTTTCGAAGGCGTAAAAGTACCCTGTAAAGTTTCAATTATGCATGATCTATTGTTCTCAGAGTGGTCAGTGTTTTGGGTGTTTCCGATGTACGCTTCAACATCCATCCGTCATTAATGTGCGATCTGAAAATTGTGGTTACGGTAGCAAATCGGAAGGAAATATCAAGTATCTAACAAAATACA
GAGGCTTACTGTTAAAATCCTTGGTGGCAGAGAAGAAGTTGCAACTATTATCCTCATTGGAATATAGTTTGTAAACAAGATTTACTTCCCTAATCATGTTGGATGCATGGTTCAGTCTTCATTCTAGCTGGTAATGCGTAACCTCTGTGGTTCATATCCAAGGCTGCAAGCTAAGTTTAAAACAGCATATTTGAAATGTA
GGCCCCTGTACTCAAAAGTTTCTTTGGCGCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGATATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCC
CCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTGAGACCATTTAATACAACATGCAAGGTTACGCTTTCATCTACATGGAAGATGAAC
AAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGAC
CTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
Intron 11 GTAATAAACA ... AACATGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.91 | 83 | 70 | 23 |
| A2 | 27.2 | 87 | 50 | 15 |
| A3 | 23.89 | 129 | 53 | 28 |
| A4 | 29.53 | 105 | 60 | 28 |
| A5 | 21.67 | 47 | 19 | 7 |
| A6 | 7.5 | 296 | 20 | 28 |
| A7 | 13.17 | 300 | 36 | 55 |
| A8 | 19.57 | 148 | 26 | 46 |
| A9 | 14.89 | 223 | 41 | 37 |
| A10 | 19.6 | 201 | 39 | 59 |
>TRINITY_DN125675_c3_g1_i11 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGC
CTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i7 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGTAAGCCATCCTTCAGTCTTACGGATTTTTGGGTATGACTCTTCAGATTTCTTCCATGCATATTCGCCACAT
TCCCTCTGTAATTGTCATTTGATCCCTTGCTGAAACCCTGAAGGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGA
GTCGAAAGGGTTGATATGAAATCAGgtaataaacagcattatattcatattcatattcaatatctatttgtttatctctcatgtctttgtaatgatatatatacgctgaaacacatgtttacctgagaatattttgtcattcagatggctttggttgctaatggcataaacaatatagatgctatctgtactttgtcaaa
accctaaacttgttatcagttccttttcctaagctgtttaaacccggttaatgtatgcctgaacaatttatttctgtatttagaacattcttcatattcttgccatctcctctgaaaatttctatctataattagaaaacctaaaatggtcttctcagttcatcctgaaataagatgtttttgcgttggaaaccatagga
ggatttttcagtttgattttcgaaggcgtaaaagtaccctgtaaagtttcaattatgcatgatctattgttctcagagtggtcagtgttttgggtgtttccgatgtacgcttcaacatccatccgtcattaatgtgcgatctgaaaattgtggttacggtagcaaatcggaaggaaatatcaagtatctaacaaaataca
gaggcttactgttaaaatccttggtggcagagaagaagttgcaactattatcctcattggaatatagtttgtaaacaagatttacttccctaatcatgttggatgcatggttcagtcttcattctagctggtaatgcgtaacctctgtggttcatatccaaggctgcaagctaagtttaaaacagcatatttgaaatgta
ggcccctgtactcaaaagtttctttggcgcaggaatattgtagagcatccaagctcttcctggagattttgtccatattctttcgtcatgcaatcaatgtttgtctttcgagaggatcggattctagccttgttcggcaaagtcgatatacaaatgacatcttgcattttttctcacgactccattacttttcatacccc
ccatgccatgttaagtattcagccacgctcaagcatgtccagagataaaatccatgacgcatcactgcaatcacaatggagcgtaactggtgaacgcgcatttctgttcgatgaccctacagccacttatggattagacttacctgagaccatttaatacaacatgcaagGTTACGCTTTCATCTACATGGAAGATGAAC
AAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGAC
CTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
Intron 12 GTAAGCCATC ... TCATCACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32 | 51 | 5 | 24 |
| A2 | 28.04 | 77 | 6 | 30 |
| A3 | 24.64 | 52 | 3 | 17 |
| A4 | 32.93 | 55 | 1 | 27 |
| A5 | 42.37 | 34 | 2 | 25 |
| A6 | 26.79 | 41 | 5 | 15 |
| A7 | 32.22 | 61 | 2 | 29 |
| A8 | 34.04 | 31 | 1 | 16 |
| A9 | 29.17 | 51 | 1 | 21 |
| A10 | 34.34 | 65 | 1 | 34 |
>TRINITY_DN125675_c3_g1_i12 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGA
TATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTG
AGACCATTTAATACAACATGCAAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCA
ACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i7 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGgtaagccatccttcagtcttacggatttttgggtatgactcttcagatttcttccatgcatattcgccacat
tccctctgtaattgtcatttgatcccttgctgaaaccctgaagggttttctgatttttcatcactagGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGA
GTCGAAAGGGTTGATATGAAATCAGGTAATAAACAGCATTATATTCATATTCATATTCAATATCTATTTGTTTATCTCTCATGTCTTTGTAATGATATATATACGCTGAAACACATGTTTACCTGAGAATATTTTGTCATTCAGATGGCTTTGGTTGCTAATGGCATAAACAATATAGATGCTATCTGTACTTTGTCAAA
ACCCTAAACTTGTTATCAGTTCCTTTTCCTAAGCTGTTTAAACCCGGTTAATGTATGCCTGAACAATTTATTTCTGTATTTAGAACATTCTTCATATTCTTGCCATCTCCTCTGAAAATTTCTATCTATAATTAGAAAACCTAAAATGGTCTTCTCAGTTCATCCTGAAATAAGATGTTTTTGCGTTGGAAACCATAGGA
GGATTTTTCAGTTTGATTTTCGAAGGCGTAAAAGTACCCTGTAAAGTTTCAATTATGCATGATCTATTGTTCTCAGAGTGGTCAGTGTTTTGGGTGTTTCCGATGTACGCTTCAACATCCATCCGTCATTAATGTGCGATCTGAAAATTGTGGTTACGGTAGCAAATCGGAAGGAAATATCAAGTATCTAACAAAATACA
GAGGCTTACTGTTAAAATCCTTGGTGGCAGAGAAGAAGTTGCAACTATTATCCTCATTGGAATATAGTTTGTAAACAAGATTTACTTCCCTAATCATGTTGGATGCATGGTTCAGTCTTCATTCTAGCTGGTAATGCGTAACCTCTGTGGTTCATATCCAAGGCTGCAAGCTAAGTTTAAAACAGCATATTTGAAATGTA
GGCCCCTGTACTCAAAAGTTTCTTTGGCGCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGATATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCC
CCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTGAGACCATTTAATACAACATGCAAGGTTACGCTTTCATCTACATGGAAGATGAAC
AAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCAACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGAC
CTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
Intron 13 GTTTGTGCTT ... TGAGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.23 | 23 | 10 | 9 |
| A2 | 16.67 | 15 | 3 | 3 |
| A3 | 5.08 | 28 | 2 | 1 |
| A4 | 17.65 | 28 | 10 | 2 |
| A5 | 22.22 | 7 | 4 | 0 |
| A6 | 11.11 | 28 | 4 | 3 |
| A7 | 20.29 | 55 | 19 | 9 |
| A8 | 18.58 | 46 | 10 | 11 |
| A9 | 23.71 | 37 | 8 | 15 |
| A10 | 16.31 | 59 | 15 | 8 |
>TRINITY_DN125675_c3_g1_i12 from sample A1 / Example spliced isoformAGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTTAGCGATGAAGCCATTGTACTGTGG
AAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGGATCGGATTCTAGCCTTGTTCGGCAAAGTCGA
TATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGACCCTACAGCCACTTATGGATTAGACTTACCTG
AGACCATTTAATACAACATGCAAGGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTAAGTGTGGAGTGGAAAAAGCCTGCTGACCGGGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGATACAGGTTTGAAGCCA
ACGAAGACATTATTTGTGATAAACTTTGACTCATACAACACCAGAGCCAGGGACCTTGAAAGGCATTTTGAGCCCTATGGCAAGGT
>TRINITY_DN125675_c3_g1_i13 from sample A1 / Example unspliced isoform:AGGGATATATAACACTTTTAGAAGCGTAGACGTCCATCATACGTTTTTTCTATTTTATTTCTGTCTGTTATGCGTGTTGCGATCAATCACACGGATCGATTCATTCCGGCTGGCGATCTGTTCTATAGGGTTTTCTGATTTTTCATCACTAGGGTTTCAACACAAAAAGAAACACTGGTGTCCAGTGCAAAGCGAGGGTT
AGCGATGAAGCCATTGTACTGTGGAAATATCGAGTACGAGGCTCGGCAGTCAGAGATTGAGCGTTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGTAATAAACAGCATTATATTCATATTCATATTCAATATCTATTTGTTTATCTCTCATGTCTTTGTAATGATATATATACGCTGAAACACA
TGTTTACCTGAGAATATTTTGTCATTCAGATGGCTTTGGTTGCTAATGGCATAAACAATATAGATGCTATCTGTACTTTGTCAAAACCCTAAACTTGTTATCAGTTCCTTTTCCTAAGCTGTTTAAACCCGGTTAATGTATGCCTGAACAATTTATTTCTGTATTTAGAACATTCTTCATATTCTTGCCATCTCCTCTGA
AAATTTCTATCTATAATTAGAAAACCTAAAATGGTCTTCTCAGTTCATCCTGAAATAAGATGTTTTTGCGTTGGAAACCATAGGAGGATTTTTCAGTTTGATTTTCGAAGGCGTAAAAGTACCCTGTAAAGTTTCAATTATGCATGATCTATTGTTCTCAGAGTGGTCAGTGTTTTGGGTGTTTCCGATGTACGCTTCAA
CATCCATCCGTCATTAATGTGCGATCTGAAAATTGTGGTTACGGTAGCAAATCGGAAGGAAATATCAAGTATCTAACAAAATACAGAGGCTTACTGTTAAAATCCTTGGTGGCAGAGAAGAAGTTGCAACTATTATCCTCATTGGAATATAGTTTGTAAACAAGATTTACTTCCCTAATCATGTTGGATGCATGGTTCAG
TCTTCATTCTAGCTGGTAATGCGTAACCTCTGTGGTTCATATCCAAGGCTGCAAGCTAAGTTTAAAACAGCATATTTGAAATGTAGGCCCCTGTACTCAAAAGTTTCTTTGGCGCAGGAATATTGTAGAGCATCCAAGCTCTTCCTGGAGATTTTGTCCATATTCTTTCGTCATGCAATCAATGTTTGTCTTTCGAGAGG
ATCGGATTCTAGCCTTGTTCGGCAAAGTCGATATACAAATGACATCTTGCATTTTTTCTCACGACTCCATTACTTTTCATACCCCCCATGCCATGTTAAGTATTCAGCCACGCTCAAGCATGTCCAGAGATAAAATCCATGACGCATCACTGCAATCACAATGGAGCGTAACTGGTGAACGCGCATTTCTGTTCGATGAC
CCTACAGCCACTTATGGATTAGACTTACCTGAGACCATTTAATACAACATGCAAGgtttgtgcttgatgccccctaatgcaagtctctacagcaatgagtaacagGTTACGCTTTCATCTACATGGAAGATGAACAAGACGCAGAGGACGCAATTCGAGGACTTGACGATTCAAAATTTGGCAGGCAAAGGCGTCGGCTA
AGTGTGGAGTGGAAAAAG
Intron 14 GTGTTGTATT ... GTTTCTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.9 | 27 | 3 | 22 |
| A2 | 38.46 | 32 | 5 | 20 |
| A3 | 40 | 24 | 5 | 16 |
| A4 | 53.13 | 15 | 3 | 17 |
| A5 | 42.11 | 11 | 4 | 8 |
| A6 | 40.76 | 93 | 3 | 64 |
| A7 | 40 | 126 | 5 | 84 |
| A8 | 43.07 | 78 | 12 | 59 |
| A9 | 38.42 | 125 | 4 | 78 |
| A10 | 40 | 90 | 14 | 60 |
>TRINITY_DN44250_c0_g1_i6 from sample A9 / Example spliced isoformGTTAAGTGCTGGCCACGAGCAAGTCTTCTATATTTAAATGGGAATATGCAATAGTTCACTCGTGTGGCATTGAACTTCATCCTTGGCTAGTCTGTGTGGCGAACCATCAATACGGATCGATTCGTTACGCCAAGCAATATCTTCTCTCGATTCGATCGTTTTGATTGATTGATTGATTTATTTAGTTTCCAGAAACCCTT
TTTTAAGTATACCGGCGGTTAGTGAAGAAAAGTTTGCGATTAGCAATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGTTCGACAGTCAGAGATTGAGCGCTTGTTTGGCAAATATGGAAGAGTCGATAGGGTTGATATGAAATCAGGTAACTGCCATCATAGTATTCATATTCGCACCCAATATCTATCGATATA
TCTAGCATGTATTTATAATGGTATATTGCTGCAACAGATGTCTGTAAACTGGTTTAGCTGACAATATTTTGTCATTCAGATGGCTTTGGTTCCCAATGGTATAAACACTGTACAAACCATCCGTAGTTTGTCAAACCCCAAACGTGTTTGTTCTGGCAGGCTGTTTAAACCTGGCTCAAATCGATCTGAACAAATAAATA
AATCCTGTTTAGTCTTCTAGTCTCTGAAGAATTTCTATCTATATTTAGAAAACTTTAAATGATCTTGTAAGTTCAATCAGAAACGAATATTTTTAAGTAGGAAACCTAAGAGGATTTATCAGATTTGTTTTGTAAAATGTAAAAGACCCTGTGAAGTCTGAATTGTTCATGGACCATTGTTCTCAGGAGAGTTGAGTGAT
TTGGTTTTCCAACAATGAACGCTTCCATACCCTTACCTGATTAATGGGTGAAGCCAGATTTGTGCTTCCAATGGCAAACTATTGTCCTCATTGGATGGAAATATCAACTATCTAAAGGAATGCAGACTTACTGTAAAAGATGCCCGGTGGCAGAAGTTCTAGCTCCAGCTATTATTCTTAATGGAATATAGTATGTCAAC
AAAATTATTTTGATTTTAGAATTGGAAATCATGTCGAATGCATGATTTTCAGTCTTCTTTCCAGCTGGTAATGCGTAACGGTAACCTCTATGGTTCATATCCAAGGTTACAAGCAAAGTTTAAGAAGCAACATTTTTGAAATGTAGGCCTCTATACTCAAAAATTTCTTTGACGCAGGAATATTCAAGAGCATCCATGCT
CTTCCTGGAGATCCTGTGCATATTCTTTCATCATGCCATGGATCAGCTAATAGCCTTGTTCAGCAAAGTTGATATACAAATGACATCTTGCATTTTTCTCACGACACCATTACTTTTCAATGTTCATCCCTCCCAAGCCATTCTAAGTCTTCATTCAGGCTCAAGCATTTCAAGAGATAGAATCCATGACACATCACTGC
AATCAGAATGGGGCATAACTGGTGACGGCACTTATCTGATGGATGACCTTACAGCCACTTATGGATTAGATTTACCTGATACCATTTAGTACAACATGCAACGTTTGTGCTTTCTGTCTCCTAATGCAGCCAGTATTTACGACAATAAGTAACAGGTTATGCTTTTGTCTATATGGAAGATGAGCGTGATGCAGAGGATG
CAATCCGAGCTCTTGACAAGACAGAATTTGGCAGGCAAAGGCGTCGGCTAACTGTAGAGTGGACAAAGCATGCTGAACGAGGTCTTCGCCGATCTGAAGATGGCAGAAGATCTGTTACAGGTTTGAAGCCAACAAAAACATTATTTGTGATAAA
>TRINITY_DN44250_c0_g1_i4 from sample A9 / Example unspliced isoform:GTTAAGTGCTGGCCACGAGCAAGTCTTCTATATTTAAATGGGAATATGCAATAGTTCACTCGTGTGGCATTGAACTTCATCCTTGGCTAGTCTGTGTGGCGAACCATCAATACGGATCGATTCGTTACGCCAAGCAATATCTTCTCTCGATTCGATCGTTTTGATTGATTGATTGATTTATTTAGTTTCCAGAAACCCTT
TTTTAAGTATACCGGCGGTTAGTGAAGAAAAGTTTGCGATTAGCAATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGTTCGACAGTCAGAGATTGAGCGCTTGTTTGGCAAATATGGAAGAGTCGAAAGGGTTGATATGAAATCAGGAATATTCAAGAGCATCCATGCTCTTCCTGGAGATCCTGTGCATATTCT
TTCATCATGCCATGGATCAGCTAATAGCCTTGTTCAGCAAAGTTGATATACAAATGACATCTTGCATTTTTCTCACGACACCATTACTTTTCAATGTTCATCCCTCCCAAGCCATTCTAAGTCTTCATTCAGGCTCAAGCATTTCAAGAGATAGAATCCATGACACATCACTGCAATCAGAATGGGGCATAACTGGTGAC
GGCACTTATCTGATGGATGACCTTACAGCCACTTATGGATTAGATTTACCTGATACCATTTAGTACAACATGCAACGTTTGTGCTTTCTGTCTCCTAATGCAGCCAGTATTTACGACAATAAGTAACAGgtgttgtatttttttttctttgtcgtagccttatatatgaaatcattcgccccagcgcacactgcaaatgt
gattgcaatccaatattttgttctttattgaatctcttgtttctatagGTTATGCTTTTGTCTATATGGAAGATGAGCGTGATGCAGAGGATGCAATCCGAGCTCTTGACAAGACAGAATTTGGCAGGCAAAGGCGTCGGCTAACTGTAGAGTGGACAAAGCATGCTGAACGAGGTCTTCGCCGATCTGAAGATGGCAGA
AGATCTGTTACAGGTTTGAAGCCAACAAAAACATTATTTGTGATAAA