sp|Q39613|CYPH_CATRO ----> Peptidyl-prolyl cis-trans isomerase

Intron 1 GTAAGTTCTC ... GTGAAATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	34.07	60	5	31
A2	42.28	71	7	52
A3	36.63	64	4	37
A4	37	63	2	37
A5	29.33	53	2	22
A6	32.72	880	6	428
A7	34.53	457	9	241
A8	34.91	289	4	155
A9	31.35	462	18	211
A10	33.05	391	6	193

>TRINITY_DN36380_c0_g1_i1 from sample A7 / Example spliced isoform

CGACCCGATCCAATGGTCGGAAAAATGGCCCCAACGTGTTTGATAGAGCGCCACCGTTAGATGTGGATCCAGCCACTCCCAACTCCACCACGGAATTCTCAAAGGTAATGACGCATATTCGAAACCACATCCGTTCGATACTCCGGTCTCGGATCGAACGGCTGAGATCACGTCTCAGAAATTTCCCATCACGACTCTGG
ATTTTAAATAGCGGGCAACGGGGGTTTGGGGTAGTCAATCATTCATTCGGTCGCTCATCGGTGCATACGACAGAAAGGTTGAGTTTTGATTCGCAGAAACGACTAAAATGCCGAACCCTAAGGTTTACTTCGACATGACCGTCGGGGGCGCACCCGCCGGAAGAATAGTGATGGAGCTTTTCGCCGACGTGACCCCTAAG
ACGGCAGATAACTTCCGCGCTCTGTGCACCGGCGAGAAAGGCACCGGGAAATCTGGGAAGCCGCTGCATTACAAGGGTTCCTCGTTCCACCGTGTGATCCCGGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGGGAACGGCACCGGCGGCGAGTCCATCTACGGTTCCAAGTTCGCCGACGAGAATTTCGTGAAGAA
GCACACCGGACCGGGAATCCTGTCGATGGCAAACGCCGGCAAGAATACCAACGGGTCTCAGTTCTTTGTCTGTACTGCAAAAACTGAGTGGTTGGACGGAAAGCATGTGGTCTTTGGTCAGGTTGTTGAGGGCCTCGACGTTGTCAAGGCCATCGAGGGTGTGGGCTCCGGCAGTGGCAGGACTTCCAAGCCCGTAGTAA
TCGCTGACTGCGGTCAGCTCTGAACCATGCTGGTTGAGCTTTAAGCTTTAATAATAGCTAGTAAGGGTATGGTAGGTTAGGGAAATTATGGGTTCCGCTGTTGTGTTGGTGTAATAAGGGTTTCTTGTGGCTTGGCCATCCGTAGATACCTTTTGTGTTCCTTGTATTACTCTTTTAATTGACTAACGACGGCTCTGGTT
TTGTCGTCCGACTCGCTTATATTTCGATGCAGCACTCGCATTTATAATTCTGTTGTTATTGCGTACTACTGTTTGCTTTTCTTACTCCCATGTGACCTTCACGATACCCCATTCTTGTGCCATCAAACTTAATTTCGAACATTTTTGTTTAGACAATTTTTATTGATTAACTTATATGGAGTAAAATAGCATATTCTGAA
GTATATGATGGAAAGTCGAACCCAATGAACCTTACGTTGTCCTTTTCAATGGTTTACCTTTTCTTAATGATTTAAC

>TRINITY_DN36380_c0_g1_i2 from sample A7 / Example unspliced isoform:

CGACCCGATCCAATGGTCGGAAAAATGGCCCCAACGTGTTTGATAGAGCGCCACCGTTAGATGTGGATCCAGCCACTCCCAACTCCACCACGGAATTCTCAAAGGTAATGACGCATATTCGAAACCACATCCGTTCGATACTCCGGTCTCGGATCGAACGGCTGAGATCACGTCTCAGAAATTTCCCATCACGACTCTGG
ATTTTAAATAGCGGGCAACGGGGGTTTGGGGTAGTCAATCATTCATTCGGTCGCTCATCGGTGCATACGACAGAAAGGTTGAGTTTTGATTCGCAGAAACGAgtaagttctctcgatcttcactgcaatcgccgctcagggttttgtttatcttttccgattctctgagattgtaagggcgatgtcggtcattttatctg
tttttttctgcggtgaaattagCTAAAATGCCGAACCCTAAGGTTTACTTCGACATGACCGTCGGGGGCGCACCCGCCGGAAGAATAGTGATGGAGCTTTTCGCCGACGTGACCCCTAAGACGGCAGATAACTTCCGCGCTCTGTGCACCGGCGAGAAAGGCACCGGGAAATCTGGGAAGCCGCTGCATTACAAGGGTTC
CTCGTTCCACCGTGTGATCCCGGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGGGAACGGCACCGGCGGCGAGTCCATCTACGGTTCCAAGTTCGCCGACGAGAATTTCGTGAAGAAGCACACCGGACCGGGAATCCTGTCGATGGCAAACGCCGGCAAGAATACCAACGGGTCTCAGTTCTTTGTCTGTACTGCAA
AAACTGAGTGGTTGGACGGAAAGCATGTGGTCTTTGGTCAGGTTGTTGAGGGCCTCGACGTTGTCAAGGCCATCGAGGGTGTGGGCTCCGGCAGTGGCAGGACTTCCAAGCCCGTAGTAATCGCTGACTGCGGTCAGCTCTGAACCATGCTGGTTGAGCTTTAAGCTTTAATAATAGCTAGTAAGGGTATGGTAGGTTAG
GGAAATTATGGGTTCCGCTGTTGTGTTGGTGTAATAAGGGTTTCTTGTGGCTTGGCCATCCGTAGATACCTTTTGTGTTCCTTGTATTACTCTTTTAATTGACTAACGACGGCTCTGGTTTTGTCGTCCGACTCGCTTATATTTCGATGCAGCACTCGCATTTATAATTCTGTTGTTATTGCGTACTACTGTTTGCTTTT
CTTACTCCCATGTGACCTTCACGATACCCCATTCTTGTGCCATCAAACTTAATTTCGAACATTTTTGTTTAGACAATTTTTATTGATTAACTTATATGGAGTAAAATAGCATATTCTGAAGTATATGATGGAAAGTCGAACCCAATGAACCTTACGTTGTCCTTTTCAATGGTTTACCTTTTCTTAATGATTTAAC

Intron 2 GTAAGTTCTC ... TTGAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.33	60	3.5	30
A2	42.28	71	7	52
A3	36.63	64	2.5	37
A4	35.05	63	2	34
A5	30.26	53	1.5	23
A6	33.69	880	3	447
A7	35.27	457	5	249
A8	36.48	289	3.5	166
A9	32.16	462	13	219
A10	33.16	391	3	194

>TRINITY_DN95383_c0_g1_i1 from sample A3 / Example spliced isoform

CTCGGATCGAACGGCTGAGATCACGTCTCAGAAATTTCCCATCACGACTCTGGATTTTAAATAGCGGGCAACGGGGGTTTGGGGTAGTCAATCATTCATTCGGTCGCTCATCGGTGCATACGACAGAAAGGTTGAGTTTTGATTCGCAGAAACGACTAAAATGCCGAACCCTAAGGTTTACTTCGACATGACCGTCGGGG
GCGCACCCGCCGGAAGAATAGTGATGGAGCTTTTCGCCGACGTGACCCCTAAGACGGCAGATAACTTCCGCGCTCTGTGCACCGGCGAGAAAGGCACCGGGAAATCTGGGAAGCCGCTGCATTACAAGGGTTCCTCGTTCCACCGTGTGATCCCGGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGGGAACGGCACC
GGCGGCGAGTCCATCTACGGTTCCAAGTTCGCCGACGAGAATTTCGTGAAGAAGCACACCGGACCGGGAATCCTGTCGATGGCAAACGCCGGCAAGAATACCAACGGGTCTCAGTTCTTTGTCTGTACTGCAAAAACTGAGTGGTTGGACGGAAAGCATGTGGTCTTTGGTCAGGTTGTTGAGGGCCTCGACGTTGTCAA
GGCCATCGAGGGTGTGGGCTCCGGCAGTGGCAGGACTTCCAAGCCCGTAGTAATCGCTGACTGCGGTCAGCTCTGAACCATGCTGGTTGAGCTTTAAGCTTTAATAATAGCTAGTAAGGGTATGGTAGGTTAGGGAAATTATGGGTTCCGCTGTTGTGTTGGTGTAATAAGGGTTTCTTGTGGCTTGGCCATCCGTAGAT
ACCTTTTGTGTTCCTTGTATTACTCTTTTAATTGACTAACGACGGCTCTGGTTTTGTCGTCCGACTCGCTTATATTTCGATGCAGCACTCGCATTTATAATTCTGTTGTTATTGCGTACTACTGTTTGCTTTTCTTACTCCCATGTGACCTTCACGATACCCCATTCTTGTGCCATC

>TRINITY_DN95383_c0_g1_i2 from sample A3 / Example unspliced isoform:

GTTTTGATTCGCAGAAACGAgtaagttctctcgatcttcactgcaatcgccgctcagggttttgtttatcttttccgattctctgagattgtaagggcgatgtcggtcattttatctgtttttttctgcggtgaaattaggtttgtttgatgttttattagggtttttctgtttctgccgtgcctttctagtagttgcag
tgaatattaccctaacgaaaatctctgttctaagccaaccggatcagatcggtggacttttaaatttgttcttcttgctaaaattgtgtcctttctgcttgtaaatataaatcttcttgccttttctgtcatgttatgcagattattcttcttgaagaattttcatttatattttatgttttccctgggcgtaacattta
tttttgggcgcatttagtctatatataagcttaacagataatgtgaaaataaatgctttgtttctttgtttgaatgcagCTAAAATGCCGAACCCTAAGGTTTACTTCGACATGACCGTCGGGGGCGCACCCGCCGGAAGAATAGTGATGGAGCTTTTCGCCGACGTGACCCCTAAGACGGCAGATAACTTCCGCGCTCT
GTGCACCGGCGAGAAAGGCACCGGGAAATCTGGGAAGCCGCTGCATTACAAGGGTTCCTCGTTCCACCGTGTGATCCCGGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGGGAACGGCACCGGCGGCGAGTCCATCTACGGTTCCAAGTTCGCCGACGAGAATTTCGTGAAGAAGCACACCGGACCGGGAATCCTGT
CGATGGCAAACGCCGGCAAGAATACCAACGGGTCTCAGTTCTTTGTCTGTACTGCAAAAACTGAGTGGTTGGACGGAAAGCATGTGGTCTTTGGTCAGGTTGTTGAGGGCCTCGACGTTGTCAAGGCCATCGAGGGTGTGGGCTCCGGCAGTGGCAGGACTTCCAAGCCCGTAGTAATCGCTGACTGCGGTCAGCTCTGA
ACCATGCTGGTTGAGCTTTAAGCTTTAATAATAGCTAGTAAGGGTATGGTAGGTTAGGGAAATTATGGGTTCCGCTGTTGTGTTGGTGTAATAAGGGTTTCTTGTGGCTTGGCCATCCGTAGATACCTTTTGTGTTCCTTGTATTACTCTTTTAATTGACTAACGACGGCTCTGGTTTTGTCGTCCGACTCGCTTATATT
TCGATGCAGCACTCGCATTTATAATTCTGTTGTTATTGCGTACTACTGTTTGCTTTTCTTACTCCCATGTGACCTTCACGATACCCCATTCTTGTGCCATC