sp|F4IS91|RSA1_ARATH ----> Protein SHORT ROOT IN SALT MEDIUM 1
Intron 1 GTATGTTAAT ... CGGGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.89 | 160 | 4 | 28 |
| A2 | 12.35 | 142 | 7 | 20 |
| A3 | 12.22 | 79 | 2 | 11 |
| A4 | 19.08 | 140 | 2 | 33 |
| A5 | 25 | 45 | 2 | 15 |
| A6 | 15.51 | 610 | 10 | 112 |
| A7 | 13.17 | 402 | 8 | 61 |
| A8 | 17.21 | 587 | 9 | 122 |
| A9 | 12.95 | 410 | 5 | 61 |
| A10 | 10.22 | 246 | 2 | 28 |
>TRINITY_DN40858_c0_g1_i5 from sample A6 / Example spliced isoformGAGAAGAAGAAAGATGAGAAGAAGGATACTGACAAGAAGAAAGACGAGAAGAAGAAAGATGAGAAGAAGGATACTGAGAAGAAGAAAGGTGAGAAGAAGAAAGATGAGAAGAAGGATACTGACAAGAAGAAAGAAGAGAAGAAAGATGAAAAGGAGACTGAAGAAAAAGTGGATAAAAAGAAAGAGGAAGAAAATAAAAA
TGAGAAAAAGAAAGAGAAGGAAAAGGAGGAAAAGAAAGATGGGAAGAAAGAGGAAAAGAAAGATGAGAAGATGGGTAAGCATGATGAAGCTAAGGATGGGGATGATAGGGCAGAGAAGGATGATAGAAGGGCAGAGATCAAAGATAAAGATTCTAAGGATATTGCTGAGACTAAAGGGAAATCTTCTAAAGAAAGAAAGG
AAAAGATTGATGAAGTACCACCATATCCAGGATTTTTTCTTACTACAAAATGCAACAAAGACAAGGTTCGTTCAATGGCATTATCTCTTGATGGGCTTCTAGATTACGATGAAAAGGACTGTGACGAAGTTACGTTTGAGCTCTCTCTGTTCGCTGAGGTTTTTCAAGAAATGCTCCAGCATCAAATGGGAAGCCAGATT
CTGACATCTCTAGAGGCATTGCGGCAAATATCAATCAAAAGAATTGAAAATCGGAAGAGGTTGCGTGAGGAAAAAAAAGAGAAAGAAGAGGACGAGGGACAATCAACACTAAAACGGTCAAGGTTTTCTGATAAGAAAACATCCAACGGTAACACAAAAGGTGACAATACTGGTTCCAAACATGTAAAAGATGAGAAGGA
TGAGAGCAAGAAGGATGAGGGCAAGAAAGTTGATGAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTAAGGATGTGAAGACTGAGAAGGTCGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTTGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAAAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTA
AGGGTGTGAAGACTGAGAAGGTTGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAAAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTAAGGATGTGAAGACTGAGAAGGTCGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAGTGAAGGTT
GAGGAGGATGAGAAGGGTGAAGAGATGGAGGAGCAAGAGGCAGAAGAAGAGGAGCCCGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGCAGAGGAGTTGGCAGATGAAGAGGAGCCAGAGGAAGAGGAGGAAGCAGAAGCTATGGAGGTAGAAGCAGGTGAACCTTTGCC
AAATGGGGAAGGGTCACCATCTCATCAAGATGTGCAGGAAAACATAAAGAGCTCAAGTGAGAAGAATGAAAAGGAAGATGGAAAGGATGGAAAAGATGCTGATGTTGAAATGGAAGACGCTTCAGTTCCAAAGAAATCACCTCAGAAGGAATCACCTCAGGAGGACAAAAATAAAGACCAGAAAGTGGACAAGGATATCA
AGCCAGATACTGTCGTTCAGAAAACAATAATTGATAAGGAACTGTTGAAGGCATATCGATATTTTGATCGTAACAGAGTTGGTTACATCAAGGTAGATGATTTGCGGATAATTTTACATAATTTGGGGAAATTCCTTTCACACAAAAATGTCAAGGAGCTCGTGTCATGTGCTCTATTTGAGAGTAACAAAACACCACGT
AATGAAAGGATTATTTATACAAATTTAGTGAAGAAAATGGTCGTGGAACATTGAAATGTGGTTGTCAAATCTTGGCTGATATCAATCTTAGTTGAGAGCAAGGATTTAACCTTGAAGTGCGTGGTCACCTGAATTGGAGCAAGTGTTGAAGTGCTTTGTGCCTGGTGACTCGACGGTGCCAAACTCTGTTCAATTGGCTG
GCTTCACTGTTCAGAGGTTATATTTACAGTTCAAAGTGTAGATTTTTGAGTAACTTGGAACTTGGTTTGGTTTTTGCTGGATTATCCTTTCATGCCGGGAATTTACTGACTGACGTTTTTCAATATCCCACTTTTTCATTATGAATCCACGTAATCCATGTAACTAGACTCGGCTCTTATGTTGTGTGTTAATCATGTTT
AACAATGTGTTGGTCCTTAGTTTATGATGTGATGGGACATCCTTGCCTTTTTTGGGTAGCAGAAGCGTTTACTGACATTGGTAGCCCGAGTTGATTCGTAAATAATTTTTGACAAAATCGCATCTTTCATTTTCTTGGGGTAATGATAATGTAATGTGTTAAATCAGTTTAAAGTTACATTGCTCGATTCTCTTGAAATT
GTCTTATTTCTTTCTTCGAGGTTTCAATTTATTTAGTCACTTTCATGTTCAGATCATGAATGATAGGAAGTGTTATATTTCCCAAACTCCTGTAACTGGTCTACCAATCTTGTTATATTTACCCAAACTCCTGTAACTGGTCTACCAATCTTGTTATATTTACCCAAACTCCTGTAACTGGTCTA
>TRINITY_DN40858_c0_g1_i1 from sample A6 / Example unspliced isoform:GAGAAGAAGAAAGATGAGAAGAAGGATACTGACAAGAAGAAAGACGAGAAGAAGAAAGATGAGAAGAAGGATACTGAGAAGAAGAAAGGTGAGAAGAAGAAAGATGAGAAGAAGGATACTGACAAGAAGAAAGAAGAGAAGAAAGATGAAAAGGAGACTGAAGAAAAAGTGGATAAAAAGAAAGAGGAAGAAAATAAAAA
TGAGAAAAAGAAAGAGAAGGAAAAGGAGGAAAAGAAAGATGGGAAGAAAGAGGAAAAGAAAGATGAGAAGATGGGTAAGCATGATGAAGCTAAGGATGGGGATGATAGGGCAGAGAAGGATGATAGAAGGGCAGAGATCAAAGATAAAGATTCTAAGGATATTGCTGAGACTAAAGGGAAATCTTCTAAAGAAAGAAAGG
AAAAGATTGATGAAGTACCACCATATCCAGGATTTTTTCTTACTACAAAATGCAACAAAGACAAGGTTCGTTCAATGGCATTATCTCTTGATGGGCTTCTAGATTACGATGAAAAGGACTGTGACGAAGTTACGTTTGAGCTCTCTCTGTTCGCTGAGGTTTTTCAAGAAATGCTCCAGCATCAAATGGGAAGCCAGATT
CTGACATCTCTAGAGGCATTGCGGCAAATATCAATCAAAAGAATTGAAAATCGGAAGAGGTTGCGTGAGGAAAAAAAAGAGAAAGAAGAGGACGAGGGACAATCAACACTAAAACGGTCAAGGTTTTCTGATAAGAAAACATCCAACGGTAACACAAAAGGTGACAATACTGGTTCCAAACATGTAAAAGATGAGAAGGA
TGAGAGCAAGAAGGATGAGGGCAAGAAAGTTGATGAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTAAGGATGTGAAGACTGAGAAGGTCGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTTGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAAAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTA
AGGGTGTGAAGACTGAGAAGGTTGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAAAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTAAGGATGTGAAGACTGAGAAGGTCGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAGTGAAGGTT
GAGGAGGATGAGAAGGGTGAAGAGATGGAGGAGCAAGAGGCAGAAGAAGAGGAGCCCGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGCAGAGGAGTTGGCAGATGAAGAGGAGCCAGAGGAAGAGGAGGAAGCAGAAGCTATGGAGGTAGAAGCAGGTGAACCTTTGCC
AAATGGGGAAGGGTCACCATCTCATCAAGATGTGCAGGAAAACATAAAGAGCTCAAGTGAGAAGAATGAAAAGGAAGATGGAAAGGATGGAAAAGATGCTGATGTTGAAATGGAAGACGCTTCAGTTCCAAAGAAATCACCTCAGAAGGAATCACCTCAGGAGGACAAAAATAAAGACCAGAAAGTGGACAAGGATATCA
AGCCAGATACTGTCGTTCAGAAAACAATAATTGATAAGGAACTGTTGAAGGTTGGCTGCAGAATTTTTCTGATGCATGTTTTGATGCTTTTAATCATTCATATGGTTCCTAATTTTAATCTTTGCATCGATTTTCAGGCATATCGATATTTTGATCGTAACAGAGTTGGTTACATCAAGGTAGATGATTTGCGGATAATT
TTACATAATTTGGGGAAATTCCTTTCACACAAAAATGTCAAGgtatgttaatgcatatgtgctattcaactgttaattgtgttatttaaaataccctgctatttcaatgcatttagcttgtgtctttgcgggtttcagGAGCTCGTGTCATGTGCTCTATTTGAGAGTAACAAAACACCACGTAATGAAAGGATTATTTA
TACAAATTTAGTGAAGAAAATGGTCGTGGAACATTGAAATGTGGTTGTCAAATCTTGGCTGATATCAATCTTAGTTGAGAGCAAGGATTTAACCTTGAAGTGCGTGGTCACCTGAATTGGAGCAAGTGTTGAAGTGCTTTGTGCCTGGTGACTCGACGGTGCCAAACTCTGTTCAATTGGCTGGCTTCACTGTTCAGAGG
TTATATTTACAGTTCAAAGTGTAGATTTTTGAGTAACTTGGAACTTGGTTTGGTTTTTGCTGGATTATCCTTTCATGCCGGGAATTTACTGACTGACGTTTTTCAATATCCCACTTTTTCATTATGAATCCACGTAATCCATGTAACTAGACTCGGCTCTTATGTTGTGTGTTAATCATGTTTAACAATGTGTTGGTCCT
TAGTTTATGATGTGATGGGACATCCTTGCCTTTTTTGGGTAGCAGAAGCGTTTACTGACATTGGTAGCCCGAGTTGATTCGTAAATAATTTTTGACAAAATCGCATCTTTCA
Intron 2 GTTGGCTGCA ... CGATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.62 | 80 | 37 | 11 |
| A2 | 25.23 | 83 | 28 | 4 |
| A3 | 36 | 32 | 18 | 2 |
| A4 | 30.77 | 18 | 8 | 1 |
| A5 | 13.33 | 13 | 2 | 0 |
| A6 | 9.76 | 74 | 8 | 9 |
| A7 | 10.56 | 161 | 19 | 11 |
| A8 | 23.83 | 195 | 61 | 6 |
| A9 | 10.44 | 163 | 19 | 7 |
| A10 | 7.94 | 116 | 10 | 5 |
>TRINITY_DN40858_c0_g1_i5 from sample A6 / Example spliced isoformGAGAAGAAGAAAGATGAGAAGAAGGATACTGACAAGAAGAAAGACGAGAAGAAGAAAGATGAGAAGAAGGATACTGAGAAGAAGAAAGGTGAGAAGAAGAAAGATGAGAAGAAGGATACTGACAAGAAGAAAGAAGAGAAGAAAGATGAAAAGGAGACTGAAGAAAAAGTGGATAAAAAGAAAGAGGAAGAAAATAAAAA
TGAGAAAAAGAAAGAGAAGGAAAAGGAGGAAAAGAAAGATGGGAAGAAAGAGGAAAAGAAAGATGAGAAGATGGGTAAGCATGATGAAGCTAAGGATGGGGATGATAGGGCAGAGAAGGATGATAGAAGGGCAGAGATCAAAGATAAAGATTCTAAGGATATTGCTGAGACTAAAGGGAAATCTTCTAAAGAAAGAAAGG
AAAAGATTGATGAAGTACCACCATATCCAGGATTTTTTCTTACTACAAAATGCAACAAAGACAAGGTTCGTTCAATGGCATTATCTCTTGATGGGCTTCTAGATTACGATGAAAAGGACTGTGACGAAGTTACGTTTGAGCTCTCTCTGTTCGCTGAGGTTTTTCAAGAAATGCTCCAGCATCAAATGGGAAGCCAGATT
CTGACATCTCTAGAGGCATTGCGGCAAATATCAATCAAAAGAATTGAAAATCGGAAGAGGTTGCGTGAGGAAAAAAAAGAGAAAGAAGAGGACGAGGGACAATCAACACTAAAACGGTCAAGGTTTTCTGATAAGAAAACATCCAACGGTAACACAAAAGGTGACAATACTGGTTCCAAACATGTAAAAGATGAGAAGGA
TGAGAGCAAGAAGGATGAGGGCAAGAAAGTTGATGAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTAAGGATGTGAAGACTGAGAAGGTCGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTTGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAAAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTA
AGGGTGTGAAGACTGAGAAGGTTGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAAAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTAAGGATGTGAAGACTGAGAAGGTCGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAGTGAAGGTT
GAGGAGGATGAGAAGGGTGAAGAGATGGAGGAGCAAGAGGCAGAAGAAGAGGAGCCCGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGCAGAGGAGTTGGCAGATGAAGAGGAGCCAGAGGAAGAGGAGGAAGCAGAAGCTATGGAGGTAGAAGCAGGTGAACCTTTGCC
AAATGGGGAAGGGTCACCATCTCATCAAGATGTGCAGGAAAACATAAAGAGCTCAAGTGAGAAGAATGAAAAGGAAGATGGAAAGGATGGAAAAGATGCTGATGTTGAAATGGAAGACGCTTCAGTTCCAAAGAAATCACCTCAGAAGGAATCACCTCAGGAGGACAAAAATAAAGACCAGAAAGTGGACAAGGATATCA
AGCCAGATACTGTCGTTCAGAAAACAATAATTGATAAGGAACTGTTGAAGGCATATCGATATTTTGATCGTAACAGAGTTGGTTACATCAAGGTAGATGATTTGCGGATAATTTTACATAATTTGGGGAAATTCCTTTCACACAAAAATGTCAAGGAGCTCGTGTCATGTGCTCTATTTGAGAGTAACAAAACACCACGT
AATGAAAGGATTATTTATACAAATTTAGTGAAGAAAATGGTCGTGGAACATTGAAATGTGGTTGTCAAATCTTGGCTGATATCAATCTTAGTTGAGAGCAAGGATTTAACCTTGAAGTGCGTGGTCACCTGAATTGGAGCAAGTGTTGAAGTGCTTTGTGCCTGGTGACTCGACGGTGCCAAACTCTGTTCAATTGGCTG
GCTTCACTGTTCAGAGGTTATATTTACAGTTCAAAGTGTAGATTTTTGAGTAACTTGGAACTTGGTTTGGTTTTTGCTGGATTATCCTTTCATGCCGGGAATTTACTGACTGACGTTTTTCAATATCCCACTTTTTCATTATGAATCCACGTAATCCATGTAACTAGACTCGGCTCTTATGTTGTGTGTTAATCATGTTT
AACAATGTGTTGGTCCTTAGTTTATGATGTGATGGGACATCCTTGCCTTTTTTGGGTAGCAGAAGCGTTTACTGACATTGGTAGCCCGAGTTGATTCGTAAATAATTTTTGACAAAATCGCATCTTTCATTTTCTTGGGGTAATGATAATGTAATGTGTTAAATCAGTTTAAAGTTACATTGCTCGATTCTCTTGAAATT
GTCTTATTTCTTTCTTCGAGGTTTCAATTTATTTAGTCACTTTCATGTTCAGATCATGAATGATAGGAAGTGTTATATTTCCCAAACTCCTGTAACTGGTCTACCAATCTTGTTATATTTACCCAAACTCCTGTAACTGGTCTACCAATCTTGTTATATTTACCCAAACTCCTGTAACTGGTCTA
>TRINITY_DN40858_c0_g1_i1 from sample A6 / Example unspliced isoform:GAGAAGAAGAAAGATGAGAAGAAGGATACTGACAAGAAGAAAGACGAGAAGAAGAAAGATGAGAAGAAGGATACTGAGAAGAAGAAAGGTGAGAAGAAGAAAGATGAGAAGAAGGATACTGACAAGAAGAAAGAAGAGAAGAAAGATGAAAAGGAGACTGAAGAAAAAGTGGATAAAAAGAAAGAGGAAGAAAATAAAAA
TGAGAAAAAGAAAGAGAAGGAAAAGGAGGAAAAGAAAGATGGGAAGAAAGAGGAAAAGAAAGATGAGAAGATGGGTAAGCATGATGAAGCTAAGGATGGGGATGATAGGGCAGAGAAGGATGATAGAAGGGCAGAGATCAAAGATAAAGATTCTAAGGATATTGCTGAGACTAAAGGGAAATCTTCTAAAGAAAGAAAGG
AAAAGATTGATGAAGTACCACCATATCCAGGATTTTTTCTTACTACAAAATGCAACAAAGACAAGGTTCGTTCAATGGCATTATCTCTTGATGGGCTTCTAGATTACGATGAAAAGGACTGTGACGAAGTTACGTTTGAGCTCTCTCTGTTCGCTGAGGTTTTTCAAGAAATGCTCCAGCATCAAATGGGAAGCCAGATT
CTGACATCTCTAGAGGCATTGCGGCAAATATCAATCAAAAGAATTGAAAATCGGAAGAGGTTGCGTGAGGAAAAAAAAGAGAAAGAAGAGGACGAGGGACAATCAACACTAAAACGGTCAAGGTTTTCTGATAAGAAAACATCCAACGGTAACACAAAAGGTGACAATACTGGTTCCAAACATGTAAAAGATGAGAAGGA
TGAGAGCAAGAAGGATGAGGGCAAGAAAGTTGATGAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTAAGGATGTGAAGACTGAGAAGGTCGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTTGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAAAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTA
AGGGTGTGAAGACTGAGAAGGTTGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAAAGAAGGATGAGAATATCAAGGAGAAGGGTGACATTAAGGATGTGAAGACTGAGAAGGTCGAGAAAGAAGAGAAGAGTGACAAGGGCAAGAAAGTGGAAGTGAAGGTT
GAGGAGGATGAGAAGGGTGAAGAGATGGAGGAGCAAGAGGCAGAAGAAGAGGAGCCCGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGCAGAGGAGTTGGCAGATGAAGAGGAGCCAGAGGAAGAGGAGGAAGCAGAAGCTATGGAGGTAGAAGCAGGTGAACCTTTGCC
AAATGGGGAAGGGTCACCATCTCATCAAGATGTGCAGGAAAACATAAAGAGCTCAAGTGAGAAGAATGAAAAGGAAGATGGAAAGGATGGAAAAGATGCTGATGTTGAAATGGAAGACGCTTCAGTTCCAAAGAAATCACCTCAGAAGGAATCACCTCAGGAGGACAAAAATAAAGACCAGAAAGTGGACAAGGATATCA
AGCCAGATACTGTCGTTCAGAAAACAATAATTGATAAGGAACTGTTGAAGgttggctgcagaatttttctgatgcatgttttgatgcttttaatcattcatatggttcctaattttaatctttgcatcgattttcagGCATATCGATATTTTGATCGTAACAGAGTTGGTTACATCAAGGTAGATGATTTGCGGATAATT
TTACATAATTTGGGGAAATTCCTTTCACACAAAAATGTCAAGGTATGTTAATGCATATGTGCTATTCAACTGTTAATTGTGTTATTTAAAATACCCTGCTATTTCAATGCATTTAGCTTGTGTCTTTGCGGGTTTCAGGAGCTCGTGTCATGTGCTCTATTTGAGAGTAACAAAACACCACGTAATGAAAGGATTATTTA
TACAAATTTAGTGAAGAAAATGGTCGTGGAACATTGAAATGTGGTTGTCAAATCTTGGCTGATATCAATCTTAGTTGAGAGCAAGGATTTAACCTTGAAGTGCGTGGTCACCTGAATTGGAGCAAGTGTTGAAGTGCTTTGTGCCTGGTGACTCGACGGTGCCAAACTCTGTTCAATTGGCTGGCTTCACTGTTCAGAGG
TTATATTTACAGTTCAAAGTGTAGATTTTTGAGTAACTTGGAACTTGGTTTGGTTTTTGCTGGATTATCCTTTCATGCCGGGAATTTACTGACTGACGTTTTTCAATATCCCACTTTTTCATTATGAATCCACGTAATCCATGTAACTAGACTCGGCTCTTATGTTGTGTGTTAATCATGTTTAACAATGTGTTGGTCCT
TAGTTTATGATGTGATGGGACATCCTTGCCTTTTTTGGGTAGCAGAAGCGTTTACTGACATTGGTAGCCCGAGTTGATTCGTAAATAATTTTTGACAAAATCGCATCTTTCA