NA ----> NA
Intron 1 GTATGCAAAG ... TTTTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.85 | 1 | 11 | 5 |
| A2 | 49.21 | 2 | 2 | 2 |
| A3 | 100 | 0 | 0 | 4 |
| A4 | 40.28 | 10 | 10 | 3.5 |
| A5 | 23.81 | 3 | 1 | 1 |
| A6 | 50.97 | 19 | 17 | 22.5 |
| A7 | 65.48 | 5 | 8 | 11 |
| A8 | 59.92 | 9 | 15 | 12 |
| A9 | 75 | 3 | 12 | 6 |
| A10 | 45.75 | 8 | 12 | 1.5 |
>TRINITY_DN41012_c0_g2_i2 from sample A6 / Example spliced isoformCAGAGTTTATCCAGTTTCTGAAGGTATGCTATTTTGTATTTATGTGTGTATGACTGTAGTCTGTAGATTACATCATATGATTCAACTGCTGCCTTCTTTCATTGAAGGTAGCAATCTGGTTTATAGTTGGTTAGTTATGAGGTAGGATTGGCTTTGTTATATATTCTTGATCTGGTTTCATACCAAGTCTATAAAATTAT
TTGCTCATGCTGGCTGGTATCCCTTAACTAGTTACTATGAAATTATGAATACAAAGCTGTAGGCTGTTAGGGGGTAAGAAACTGTCTTCTTTGGGCTTCCACACCGTACTCAAAGGTACTGTGTTATGCATCAGTGCATAATCTTTGTTAGGGACTCCATTTTGGCAATTTCATAATCTTTGTTAGGGACTCCGTTTTGG
CAACTTCATACAGCCTGCTCTGTACTATCTATATTGTAGCAAATGCGCATGTATAATGTAGGCTGTCAGGAGTGTCAGATATGCTTATCTGGGCGTTAACAAGTTGGATGCTGTTATTCTGTGTAGTCGCCAGCCATTCTTTGGAGTCTTGGACTTATTACTGTTTTCTCTTTCTAATCTGTCCCTTTTTGGCGCTCTGC
TTTTCTTCCTCGGGATGAAGAACTCGTTTACAAAGAAACCCAAGAAGAAGCCAGCCAAGTCAAAGACAATTTAGGTTGA
>TRINITY_DN41012_c0_g2_i3 from sample A6 / Example unspliced isoform:CAGAGTTTATCCAGTTTCTGAAGGTATGCTATTTTGTATTTATGTGTGTATGACTGTAGTCTGTAGATTACATCATATGATTCAACTGCTGCCTTCTTTCATTGAAGGTAGCAATCTGGTTTATAGTTGGTTAGTTATGAGGTAGGATTGGCTTTGTTATATATTCTTGATCTGGTTTCATACCAAGTCTATAAAATTAT
TTGCTCATGCTGGCTGGTATCCCTTAACTAGTTACTATGAAATTATGAATACAAAGCTGTAGGCTGTTAGGGGGTAAGAAACTGTCTTCTTTGGGCTTCCACACCGTACTCAAAGGTACTGTGTTATGCATCAGTGCATAATCTTTGTTAGGGACTCCATTTTGGCAATTTCATAATCTTTGTTAGGGACTCCGTTTTGG
CAACTTCATACAGCCTGCTCTGTACTATCTATATTGTAGCAAATGCGCATGTATAATGTAGGCTGTCAGGAGTGTCAGATATGCTTATCTGGGCGTTAACAAGgtatgcaaaggtgctttgttaattgcatagtttatagtggctcaattttaggaagttcatatgttccattttatacaatctgtttgtagcagatgag
aacatattttgtaactcactatacgcccttcttttctttcgggttattttgtgtagTTGGATGCTGTTATTCTGTGTAGTCGCCAGCCATTCTTTGGAGTCTTGGACTTATTACTGTTTTCTCTTTCTAATCTGTCCCTTTTTGGCGCTCTGCTTTTCTTCCTCGGGATGAAGAACTCGTTTACAAAGAAACCCAAGAAG
AAGACAGCTAAGTCAAAGACAATTTAGGTTGA
Intron 2 GTAAATCTTT ... TTTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.85 | 2.5 | 6 | 18 |
| A2 | 45 | 2.5 | 6 | 2 |
| A3 | 87.12 | 1.5 | 6 | 10 |
| A4 | 0 | 3.5 | 4 | 0 |
| A5 | 54.16 | 6 | 2 | 7 |
| A6 | 55.03 | 36 | 20 | 44 |
| A7 | 76.3 | 14 | 14 | 45 |
| A8 | 67.55 | 37.5 | 15 | 78 |
| A9 | 67.12 | 25 | 11 | 51 |
| A10 | 72.63 | 10.5 | 3 | 27 |
>TRINITY_DN41012_c0_g2_i3 from sample A6 / Example spliced isoformCAGAGTTTATCCAGTTTCTGAAGGTATGCTATTTTGTATTTATGTGTGTATGACTGTAGTCTGTAGATTACATCATATGATTCAACTGCTGCCTTCTTTCATTGAAGGTAGCAATCTGGTTTATAGTTGGTTAGTTATGAGGTAGGATTGGCTTTGTTATATATTCTTGATCTGGTTTCATACCAAGTCTATAAAATTAT
TTGCTCATGCTGGCTGGTATCCCTTAACTAGTTACTATGAAATTATGAATACAAAGCTGTAGGCTGTTAGGGGGTAAGAAACTGTCTTCTTTGGGCTTCCACACCGTACTCAAAGGTACTGTGTTATGCATCAGTGCATAATCTTTGTTAGGGACTCCATTTTGGCAATTTCATAATCTTTGTTAGGGACTCCGTTTTGG
CAACTTCATACAGCCTGCTCTGTACTATCTATATTGTAGCAAATGCGCATGTATAATGTAGGCTGTCAGGAGTGTCAGATATGCTTATCTGGGCGTTAACAAGGTATGCAAAGGTGCTTTGTTAATTGCATAGTTTATAGTGGCTCAATTTTAGGAAGTTCATATGTTCCATTTTATACAATCTGTTTGTAGCAGATGAG
AACATATTTTGTAACTCACTATACGCCCTTCTTTTCTTTCGGGTTATTTTGTGTAGTTGGATGCTGTTATTCTGTGTAGTCGCCAGCCATTCTTTGGAGTCTTGGACTTATTACTGTTTTCTCTTTCTAATCTGTCCCTTTTTGGCGCTCTGCTTTTCTTCCTCGGGATGAAGAACTCGTTTACAAAGAAACCCAAGAAG
AAGACAGCTAAGTCAAAGACAATTTAGGTTGA
>TRINITY_DN41012_c0_g2_i1 from sample A6 / Example unspliced isoform:CAGAGTTTATCCAGTTTCTGAAGGTATGCTATTTTGTATTTATGTGTGTATGACTGTAGTCTGTAGATTACATCATATGATTCAACTGCTGCCTTCTTTCATTGAAGGTAGCAATCTGGTTTATAGTTGGTTAGTTATGAGGTAGGATTGGCTTTGTTATATATTCTTGATCTGGTTTCATACCAAGTCTATAAAATTAT
TTGCTCATGCTGGCTGGTATCCCTTAACTAGTTACTATGAAATTATGAATACAAAGCTGTAGGCTGTTAGGGGGTAAGAAACTGTCTTCTTTGGGCTTCCACACCGTACTCAAAGGTACTGTGTTATGCATCAGTGCATAATCTTTGTTAGGGACTCCATTTTGGCAATTTCATAATCTTTGTTAGGGACTCCGTTTTGG
CAACTTCATACAGCCTGCTCTGTACTATCTATATTGTAGCAAATGCGCATGTATAATGTAGGCTGTCAGGAGTGTCAGATATGCTTATCTGGGCGTTAACAAGGTATGCAAAGGTGCTTTGTTAATTGCATAGTTTATAGTGGCTCAATTTTAGGAAGTTCATATGTTCCATTTTATACAATCTGTTTGTAGCAGATGAG
AACATATTTTGTAACTCACTATACGCCCTTCTTTTCTTTCGGGTTATTTTGTGTAGTTGGATGCTGTTATTCTGTGTAGTCGCCAGCCATTCTTTGGAGTCTTGGACTTATTACTGTTTTCTCTTTCTgtaaatcttttatcctgtcttggagccaatggtcatagtattttgcacagcgcaatatttaacttttactat
gtagtaactttgcctggttcagttatttgattgagtttattgtacaaatgcttaaattatgtggggacttggtttctcgtgggatgttaatttgtttaccgagctgtattgtcattatattcgtctaacatttaatttcatatccgtattttataaattaaattttgtgcagAATCTGTCCCTTTTTGGCGCTCTGCTTT
TCTTCCTCGGGATGAAGAACTCGTTTACAAAGAAACCCAAGAAGAAGCCAGCCAAGTCAAAGACAATTTAGGTTGA