sp|O04905|KCY3_ARATH ----> UMP-CMP kinase 3
Intron 1 GTAAATATAT ... ATTGAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.27 | 267 | 87 | 66 |
| A2 | 20.87 | 328 | 80 | 93 |
| A3 | 21.26 | 337 | 112 | 70 |
| A4 | 19.39 | 343 | 83 | 82 |
| A5 | 26.6 | 149 | 61 | 47 |
| A6 | 19.53 | 548 | 147 | 119 |
| A7 | 22.48 | 1005 | 399 | 184 |
| A8 | 22.01 | 388 | 145 | 74 |
| A9 | 21.64 | 920 | 341 | 167 |
| A10 | 22.34 | 937 | 349 | 190 |
>TRINITY_DN118305_c4_g1_i18 from sample A1 / Example spliced isoformTTTTCCCGTTAACCGACCATAACCCTGTATTATTATTAATCTTTTTGAAGTCGTAAAAGAGAAATTCCGCCGACGATTAAGCATCTCTGAGAAAATACCAAGCGAGCTCGTACAGAGAAGTTGGTTACTTTGACGGGGTGTGGGGGTCAGTATAAATACAAGCGAAGGCCAACCATTTTGAGTATGGGAAGGTGGCATCG
TTTGAGATTACTGACATTGTCGAGATCCAGAGTCTCCTCAATCACTTCTTCTGTCCATTATCCATATTCTACCTTTTCTATTGCAAATCAGGATTTGCACTGGTTTTGAAACGCGCTGAAAAATCACTTGCAGGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGGTGAAGACACCAATTCTT
CATACAGAAGCCAGGCACAGTTTTGGATACATTCTAGGTCAAACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGAGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAA
GGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACACACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTT
TTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGCATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTC
TACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGA
ATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTACTACCTAATATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTT
ATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTA
TTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTT
ATTGTACTATGTCAAACACTTTTT
>TRINITY_DN118305_c4_g1_i14 from sample A1 / Example unspliced isoform:TTTTCCCGTTAACCGACCATAACCCTGTATTATTATTAATCTTTTTGAAGTCGTAAAAGAGAAATTCCGCCGACGATTAAGCATCTCTGAGAAAATACCAAGCGAGCTCGTACAGAGAAGTTGGTTACTTTGACGGGGTGTGGGGGTCAGTATAAATACAAGCGAAGGCCAACCATTTTGAGTATGGGAAGGTGGCATCG
TTTGAGATTACTGACATTGTCGAGATCCAGAGTCTCCTCAATCACTTCTTCTGTCCATTATCCATATTCTACCTTTTCTATTGCAAATCAGgtaaatatatgtttattcttgttttccttatgtttctggtcatgtataatggataatctatcatagatagatctaaactgcaatttgaaagctgccctcatggtgttat
ttggtacattagctgaaactcatgttctagtccatggatctggcatggtgtgtggagtctggattgcccatgttctagatttgaatcccgagacacccagctctggctgaatggcatgctaacatgggtttatccagataacgcagctggagactgcatctgtagaagcttctggcatgttggaggctatgaaatatata
tttgggaccctggcctgaagagtacattatttagcccctgtttctgttgtgaagtcaagtataccaatttgactgggaattgaatcagGATTTGCACTGGTTTTGAAACGCGCTGAAAAATCACTTGCAGGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGGTGAAGACACCAATTCTTCAT
ACAGAAGCCAGGCACAGTTTTGGATACATTCTAGGTCAAACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGAGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGT
ACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACACACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTT
GATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGCATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTAC
CAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATA
TCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTACTACCTAATATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATT
CTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTG
TTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATT
GTACTATGTCAAACACTTTTT
Intron 2 GTATACTACT ... CATGTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.51 | 492 | 2 | 64 |
| A2 | 10.48 | 521 | 0 | 61 |
| A3 | 8.8 | 456 | 0 | 44 |
| A4 | 11.11 | 416 | 3 | 52 |
| A5 | 9.41 | 183 | 0 | 19 |
| A6 | 9.46 | 976 | 0 | 102 |
| A7 | 8.93 | 1672 | 0 | 164 |
| A8 | 9.05 | 985 | 0 | 98 |
| A9 | 6.93 | 1598 | 1 | 119 |
| A10 | 8.43 | 1467 | 0 | 135 |
>TRINITY_DN43528_c0_g3_i4 from sample A7 / Example spliced isoformGTTGAACAGTAATGAATTGCAAGGAAACCCAACTTATAAAATAACCACATATTAAAACCCCTAAACCACACGCCAATTTTCCCGTTAACCGACCATAACCCTGTATTATTATTAATCTTTTTGAAGTCGTAAAAGAGAAATTCCGCCGACGATTAAGCATCTCTGAGAAAATACCAAGCGAGCTCGTACAGAGAAGTTGG
TTACTTTGACGGGGTGTGGGGGTCAGTATAAATACAAGCGAAGGCCAACCATTTTGAGTATGGGAAGGTGGCATCGTTTGAGATTACTGACATTGTCGAGATCCAGAGTCTCCTCAATCACTTCTTCTGTCCATTATCCATATTCTACCTTTTCTATTGCAAATCAGGATTTGCACTGGTTTTGAAACGCGCTGAAAAAT
CACTTGCAGGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGGTGAAGACACCAATTCTTCATACAGAAGCCAGGCACAGTTTTGGATACATTCTAGGTCAAACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGAGTTATATCTGAGGAGAA
AAAGCTGCATGTTGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACACACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGG
AAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGCATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTA
AACAGGAACCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGA
AGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTATTAAGGATAAGACTATTGGAAAAAA
CTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGG
CATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCG
GTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATTGTACTATGTCAAACACTTTTTGTGACC
>TRINITY_DN43528_c0_g3_i11 from sample A7 / Example unspliced isoform:ATTAAATCAGGCTCTGAAAATGGgtatactactttttcttcagtttacaagttctattaaggctttgtgtttaatcaagatattgatttgaagatattgaatcatattacaacatttcatttcttggtgagttgagcacatttggttcatgtctcagAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCC
TCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGCATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCG
AGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTC
TCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTT
TGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGC
ACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGA
ATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATTGTACTATGTCAAACACTTTTTGTGACC
Intron 3 GTAAATATAT ... TCACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.19 | 293 | 87 | 143 |
| A2 | 29.02 | 269 | 80 | 140 |
| A3 | 29.94 | 303 | 112 | 147 |
| A4 | 28.06 | 314 | 83 | 162 |
| A5 | 30.04 | 177 | 61 | 91 |
| A6 | 27.83 | 485 | 147 | 227 |
| A7 | 26.32 | 1051 | 399 | 352 |
| A8 | 28.38 | 443 | 145 | 206 |
| A9 | 25.85 | 1017 | 341 | 368 |
| A10 | 28.37 | 934 | 349 | 391 |
>TRINITY_DN118305_c4_g1_i3 from sample A1 / Example spliced isoformTTTTCCCGTTAACCGACCATAACCCTGTATTATTATTAATCTTTTTGAAGTCGTAAAAGAGAAATTCCGCCGACGATTAAGCATCTCTGAGAAAATACCAAGCGAGCTCGTACAGAGAAGTTGGTTACTTTGACGGGGTGTGGGGGTCAGTATAAATACAAGCGAAGGCCAACCATTTTGAGTATGGGAAGGTGGCATCG
TTTGAGATTACTGACATTGTCGAGATCCAGAGTCTCCTCAATCACTTCTTCTGTCCATTATCCATATTCTACCTTTTCTATTGCAAATCAGGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGGTGAAGACACCAATTCTTCATACAGAAGCCAGGCACAGTTTTGGATACATTCTAGGTCAA
ACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGAGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACA
CACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGC
ATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCA
AGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATT
GTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTACTACCTAATATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATC
CAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATT
AACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATTGTACTATGTCAAACACTTTTT
>TRINITY_DN118305_c4_g1_i14 from sample A1 / Example unspliced isoform:TTTTCCCGTTAACCGACCATAACCCTGTATTATTATTAATCTTTTTGAAGTCGTAAAAGAGAAATTCCGCCGACGATTAAGCATCTCTGAGAAAATACCAAGCGAGCTCGTACAGAGAAGTTGGTTACTTTGACGGGGTGTGGGGGTCAGTATAAATACAAGCGAAGGCCAACCATTTTGAGTATGGGAAGGTGGCATCG
TTTGAGATTACTGACATTGTCGAGATCCAGAGTCTCCTCAATCACTTCTTCTGTCCATTATCCATATTCTACCTTTTCTATTGCAAATCAGgtaaatatatgtttattcttgttttccttatgtttctggtcatgtataatggataatctatcatagatagatctaaactgcaatttgaaagctgccctcatggtgttat
ttggtacattagctgaaactcatgttctagtccatggatctggcatggtgtgtggagtctggattgcccatgttctagatttgaatcccgagacacccagctctggctgaatggcatgctaacatgggtttatccagataacgcagctggagactgcatctgtagaagcttctggcatgttggaggctatgaaatatata
tttgggaccctggcctgaagagtacattatttagcccctgtttctgttgtgaagtcaagtataccaatttgactgggaattgaatcaggatttgcactggttttgaaacgcgctgaaaaatcacttgcagGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGGTGAAGACACCAATTCTTCAT
ACAGAAGCCAGGCACAGTTTTGGATACATTCTAGGTCAAACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGAGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGT
ACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACACACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTT
GATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGCATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTAC
CAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATA
TCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTACTACCTAATATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATT
CTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTG
TTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATT
GTACTATGTCAAACACTTTTT
Intron 4 GTGAAGACAC ... CAGAAGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.39 | 116.6 | 264.4 | 268 |
| A2 | 69.74 | 103.3 | 222.7 | 229.6 |
| A3 | 68.05 | 123.7 | 263.6 | 248.9 |
| A4 | 69.58 | 127.3 | 284.6 | 276.1 |
| A5 | 70.75 | 56.6 | 141.3 | 124 |
| A6 | 67.54 | 210.1 | 433.6 | 414.7 |
| A7 | 69.86 | 345.4 | 770.3 | 762.3 |
| A8 | 69.64 | 175.4 | 369.7 | 399.4 |
| A9 | 68.31 | 370.3 | 766.9 | 766.6 |
| A10 | 67.89 | 332.7 | 690.4 | 671.4 |
>TRINITY_DN114425_c1_g1_i2 from sample A2 / Example spliced isoformGTTGAACAGTAATGAATTGCAAGGAAACCCAACTTATAAAATAACCACATATTAAAACCCCTAAACCACACGCCAATTTTCCCGTTAACCGACCATAACCCTGTATTATTATTAATCTTTTTGAAGTCGTAAAAGAGAAATTCCGCCGACGATTAAGCATCTCTGAGAAAATACCAAGCGAGCTCGTACAGAGAAGTTGG
TTACTTTGACGGGGTGTGGGGGTCAGTATAAATACAAGCGAAGGCCAACCATTTTGAGTATGGGAAGGTGGCATCGTTTGAGATTACTGACATTGTCGAGATCCAGAGTCTCCTCAATCACTTCTTCTGTCCATTATCCATATTCTACCTTTTCTATTGCAAATCAGGATTTGCACTGGTTTTGAAACGCGCTGAAAAAT
CACTTGCAGGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGGCACAGTTTTGGATACATTCTAGGTCAAACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGAGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTATATCTGAGGAGAAAA
AGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACACACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTT
AAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGCATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCGAGTCGATGACAATGT
AGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAG
TATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTAC
ATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGC
CTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGC
TAATAATGGCAGAGAACTTGATATTTTTTGGGTTA
>TRINITY_DN114425_c1_g1_i3 from sample A2 / Example unspliced isoform:GTTACTATTGATGTTTTCAATCAATATCCCTGGCTGTTGTATTAACCTAACCCATTTACTAGCCCTGTCACGCTTTGGGTTTCCTCTCATTCATTGAGATCATGAAATTTGACTTGATTTTGTGTATGAGGATTTGTGTCTTGAGATGTGGACGATTTTCAAACTTCTAGGGTTCTTGTTACAGGATTTGCACTGGTTTT
GAAACGCGCTGAAAAATCACTTGCAGGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGgtgaagacaccaattcttcatacagaagccagGCACAGTTTTGGATACATTCTAGGTCAAACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGA
GTTATATCTGAGGAGAAAAAGCTGCATGTTGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACACACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGAT
CGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGCATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGA
TGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAAC
ATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTATTAAGGAT
AAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACG
GTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTT
TACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTA
Intron 5 GTGATAGCAA ... GCACGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.99 | 433 | 72.6 | 171.6 |
| A2 | 27.96 | 367 | 45.7 | 145.6 |
| A3 | 28.45 | 398 | 38.6 | 161.8 |
| A4 | 25.11 | 372 | 63 | 126.9 |
| A5 | 20.99 | 161 | 32.5 | 43.4 |
| A6 | 28.91 | 1447 | 105.7 | 602.6 |
| A7 | 28.42 | 1969 | 148.1 | 800.1 |
| A8 | 30.13 | 1679 | 139.3 | 742.6 |
| A9 | 27.92 | 1931 | 155.3 | 765.2 |
| A10 | 27.54 | 1478 | 128.1 | 574.4 |
>TRINITY_DN118305_c4_g1_i3 from sample A1 / Example spliced isoformTTTTCCCGTTAACCGACCATAACCCTGTATTATTATTAATCTTTTTGAAGTCGTAAAAGAGAAATTCCGCCGACGATTAAGCATCTCTGAGAAAATACCAAGCGAGCTCGTACAGAGAAGTTGGTTACTTTGACGGGGTGTGGGGGTCAGTATAAATACAAGCGAAGGCCAACCATTTTGAGTATGGGAAGGTGGCATCG
TTTGAGATTACTGACATTGTCGAGATCCAGAGTCTCCTCAATCACTTCTTCTGTCCATTATCCATATTCTACCTTTTCTATTGCAAATCAGGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGGTGAAGACACCAATTCTTCATACAGAAGCCAGGCACAGTTTTGGATACATTCTAGGTCAA
ACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGAGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACA
CACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGC
ATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCA
AGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATT
GTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTACTACCTAATATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATC
CAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATT
AACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATTGTACTATGTCAAACACTTTTT
>TRINITY_DN118305_c4_g1_i4 from sample A1 / Example unspliced isoform:CTTTATGGGAAATACTGAATTTGGCTTTTACAAGCCAATTCCTGCTTAAAAAGCCACAATTCCCCTAAGCTAAGAGGGGGGATGGTTTTCAGGAAAAGTAGCCTTACACGTGGAATTCCACAAACCCAATTGCAAACAACCAAGATGTGCACCAATTTTTTTGCAGGTTTCACCTAATCATCCAAGTGTCTTCAAGCAGT
CGGCCTTTCCGAGAAAGTGGGGCAGTGAAAAGATAGTTAAATTCAGCCTGCAACCTTGCTCAAAAACACTTGGCAGATGGGCATCTCCGGAAAACATGCATAACCGTTTCCCCTCTATCACAAAGCTTGCATGCAACATTTGTAACACCAATTTTTTGAAGCCTAGTCTTGACAGCCAAACCTTTGTGGAGCATAAGCTA
CCCCAAGGAAGATTGAGATTTCCTAGTAGACTGGCACCTCCTCAGCCCTTGGCTTTTATAATCCCTCAGCCTCTGTCTTCTGTTCAAGCATGGAACAAGTTTGGTGGTGCATCCTACAAGAGCATAGATGCCGCTTTTCACATAGTTGTAGAAGGCCTTCCGGCTACTCCATCACAAATGGTGGCAGCCATACATACACA
TACCTTATTCAGAACCAACATCATTTGTCACAATAACTTAGCTAGGAAATATTATTGAAAATTATTGCATGTTGATATTTACTTCACCTCCTGCTGCTTCAATCTGTTGTTCTGGGTATTCATGGTTGTATTGTCAGGTTGGTATTGGTAGGGATTGTTATGGGTAAGAGTCCAAGGCATTTAAATATCGAGGTTGAATT
AGATATATACACACCACTGAATGCAAAATTAGGTTACAGGTACAGCAAGATGGTTAGAGACAAACACAGATGTGGATCTGGCTCCATTTGTCACAATAACTTAGCCAGCAAAATAGAATGTACAATCAGGGATGTTTAGATTTTTTTTACCATCGATTTTGCTTCATGTTGTTGGCCTCTAAGCCCTTTGGCTGCCCAAT
TTTTTCCTTGTTTGGTACTCAGATTTTTCCATCAGTTTGCATTTATTTGTATCGATTTCACTGGCATTGCCATTAGTTTGACCTTATAGGACTTGTTGTATTTCTGTGATGTTTGCTTATATTCTGTAAATGGCCGTAAGAAAATATCTTGTATCAAAGAATTTACAGAATTTCAGTTTGAACAGACAAATTCAAGAACA
TACTCTTGTCTAGAACCATACCATTGTATTGGAAGATTCAAGACTGTTCAGCCATCACAAGTTTTCCTTTTTGTAGGTGTTTTTTCTAGAATTGTCAAGAAATACATAAAGAATTATGTAAGATTTTATATATTTCTATTATCAAGATTCTTGTGAATCAGGTTCACATGGGGATTGCTGACCTTTAAAAAGCAATGAAA
TTCACCTACTGATAAGTTTGTAATGGTGCTTTTTATGCCAAGCAGCTAGGTGGTTCTTTTGTAATAGTGATAGTAACTATATAAATAATTTTACAGACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGTAAGCTTAGTAGGCAATTCTTT
TCCTTCACCATTTTGAGTACTTTTTATATGATCAAAAAATCTATCTATAGAGCTGAATGATTTCACTTTATTTATCAAGAATTTTTGTTTTGCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGC
AAGgtgatagcaatttatttatagcaatttaagtgattctaatgttaactataagtctacaagtttttggttattgtgacttgaaggggaaagctgagaagtaatatgcttgccagtttcactgttacctgtttatttagagcagtttaaaagattctcatatgaaccaaatttggagtatttgttagaacttgggattc
aggaattgacgttttcactaaaattgttaatttccttcttgattcctgcaataggctatccctttctgtccatctttcatccaatttggttcattttattggctaattgaatactaaatgtgattacatggcagcttccttcaatattttgttgaaatctgagtcacgttcatcatatatgctggaatattttatggata
tggaaaacctgtgcagactgtttctagttccttcaaatccttttttacttttgtgaactaatttatttttcaagcacgtgcagATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCA
TCAGCATTTATTGATAACAAGGTAATTAATTCTTATGAGATTAAGGTTTGTTTGTATTTTTCACCAAGTAACACAGCTTTGGAAATGCACATCCTACACAGCTCTTTTGAGAATAATTAATTTGCAACTGTACAATGAGTTTTGGTTTTTCTAGTATTTGTAGTCTATAAACTTCCGTTTCATAATATAAGCAATGTTTC
CTGATTTTGCAATGGAAC
Intron 6 GTAAGCTTAG ... TGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.77 | 431 | 8 | 113 |
| A2 | 15.23 | 345 | 8 | 62 |
| A3 | 13.73 | 402 | 0 | 64 |
| A4 | 18.26 | 394 | 8 | 88 |
| A5 | 19.07 | 174 | 0 | 41 |
| A6 | 14.96 | 1131 | 3 | 199 |
| A7 | 13.52 | 1663 | 6 | 260 |
| A8 | 17.85 | 1169 | 12 | 254 |
| A9 | 14.63 | 1570 | 2 | 269 |
| A10 | 13.1 | 1287 | 2 | 194 |
>TRINITY_DN42218_c0_g2_i3 from sample A9 / Example spliced isoformGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACACACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCA
AAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACACACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGT
CCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGCATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGG
GCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGG
ACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAA
GGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTA
CTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTG
TAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATTGTACTATGTCAAACACTTTTTGTGACCATTTTGATTTTGGCCAGTAATCTTCACAAATAGAATGATTATAAGATTCTGTGATGGGTATGAAGGGAAGAGTTAGAAATGGTTAGGAAAAGAAGAATTTCTTTCTTATGTGGTTTG
ATTGCATATATGATATATATAGATGAACATGGCTGCCTGGGCTAATGTTTGGTGCAGGCTACTTCATGGGTCTTCCTCTGTATGGCAGAGATTGGGG
>TRINITY_DN42218_c0_g2_i2 from sample A9 / Example unspliced isoform:GCTTTTACAAGCCAATTCCTGCTTAAAAAGCCACAATTCCCCTAAGCTAAGAGGGGGGATGGTTTTCAGGAAAAGTAGCCTTACACGTGGAATTCCACAAACCCAATTGCAAACAACCAAGATGTGCACCAATTTTTTTGCAGGTTTCACCTAATCATCCAAGTGTCTTCAAGCAGTCGGCCTTTCCGAGAAAGTGGGGC
AGTGAAAAGATAGTTAAATTCAGCCTGCAACCTTGCTCAAAAACACTTGGCAGATGGGCATCTCCGGAAAACATGCATAACCGTTTCCCCTCTATCACAAAGCTTGCATGCAACATTTGTAACACCAATTTTTTGAAGCCTAGTCTTGACAGCCAAACCTTTGTGGAGCATAAGCTACCCCAAGGAAGATTGAGATTTCC
TAGTAGACTGGCACCTCCTCAGCCCTTGGCTTTTATAATCCCTCAGCCTCTGTCTTCTGTTCAAGCATGGAACAAGTTTGGTGGTGCATCCTACAAGAGCATAAATGCCGCTTTTCACATAGTTGTAGAAGGCCTTCCGGCTACTCCATCACAAATGGTGGCAGCCATACATACACATACCTTATTCAGAACCAACATCA
TTTGTCACAATAACTTAGCTAGGAAATATTATTGAAAATTATTGCATGTTGATATTTACTTCACCTCCTGCTGCTTCAATCTGTTGTTCTGGGTATTCATGGTTGTATTGTCAGGTTGGTATTGGTAGGGATTGTTATGGGTAAGAGTCCAAGGCATTTAAATATCGAGGTTGAATTAGATATATACACACCACTGAATG
CAAAATTAGGTTACAGGTACAGCAAGATGGTTAGAGACAAACACAGATGTGGATCTGGCTCCATTTGTCACAATAACTTAGCCAGCAAAATAGAATGTACAATCAGGGATGTTTAGATTTTTTTTACCATCGATTTTGCTTCATGTTGTTGGCCTCTAAGCCCTTTGGCTGCCCAATTTTTTCCTTGTTTGGTACTCAGA
TTTTTCCATCAGTTTGCATTTATTTGTATCGATTTCACTGGCATTGCCATTAGTTTGACCTTATAGGACTTGTTGTATTTCTGTGATGTTTGCTTATATTCTGTAAATGGCCGTAAGAAAATATCTTGTATCAAAGAATTTACAGAATTTCAGTTTGAACAGACAAATTCAAGAACATACTCTTGTCTAGAACCATACCA
TTGTATTGGAAGATTCAAGACTGTTCAGCCATCACAAGTTTTCCTTTTTGTAGGTGTTTTTTCTAGAATTGTCAAGAAATACATAAAGAATTATGTAAGATTTTATATATTTCTATTATCAAGATTCTTGTGAATCAGGTTCACATGGGGATTGCTGACCTTTAAAAAGCAATGAAATTCACCTACTGATAAGTTTGTAA
TGGTGCTTTTTATGCCAAGCAGCTAGGTGGTTCTTTTGTAATAGTGATAGTAACTATATAAATAATTTTACAGACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGgtaagcttagtaggcaattcttttccttcaccattttgagtacttt
ttatatgatcaaaaaaatctatctatagagctgaatgatttcactttatttatcaagaatttttgttttgcagGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCAAGATTGATGCAGTGAAGACAA
AAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATTGTATGAGCCTTCCTAGGATAT
ACGTTCCTTGTATGCCAATGACCATTAAACTCTTTATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATCCAAGGTAATTTAGTTTCTTCTGGATGAAGAT
GCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATTAACAGCTGCAGATTTTGAGGTGAAACTTCAT
GTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATTGTACTATGTCAAACACTTTTTGTGACCATTTTGATTTTGGCCAGTAATCTTCACAAATAGAATGATTATA
AGATTCTGTGATGGGTATGAAGGGAAGAGTTAGAAATGGTTAGGAAAAGAAGAATTTCTTTCTTATGTGGTTTGATTGCATATATGATATATATAGATGAACATGGCTGCCTGGGCTAATGTTTGGTGCAGGCTACTTCATGGGTCTTCCTCTGTATGGCAGAGATTGGGG
Intron 7 GTAAGCTTAG ... TGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.79 | 431 | 8 | 17 |
| A2 | 2.82 | 345 | 8 | 10 |
| A3 | 1.71 | 402 | 0 | 7 |
| A4 | 4.14 | 394 | 8 | 17 |
| A5 | 1.69 | 174 | 0 | 3 |
| A6 | 2.5 | 1131 | 3 | 29 |
| A7 | 1.01 | 1663 | 6 | 17 |
| A8 | 1.85 | 1169 | 12 | 22 |
| A9 | 0.88 | 1570 | 2 | 14 |
| A10 | 1.98 | 1287 | 2 | 26 |
>TRINITY_DN118305_c4_g1_i3 from sample A1 / Example spliced isoformTTTTCCCGTTAACCGACCATAACCCTGTATTATTATTAATCTTTTTGAAGTCGTAAAAGAGAAATTCCGCCGACGATTAAGCATCTCTGAGAAAATACCAAGCGAGCTCGTACAGAGAAGTTGGTTACTTTGACGGGGTGTGGGGGTCAGTATAAATACAAGCGAAGGCCAACCATTTTGAGTATGGGAAGGTGGCATCG
TTTGAGATTACTGACATTGTCGAGATCCAGAGTCTCCTCAATCACTTCTTCTGTCCATTATCCATATTCTACCTTTTCTATTGCAAATCAGGCAAAAAAGGCAGCCATACTTGAAATCTTTGGTGGCCATCTTCTGCCAGGTGAAGACACCAATTCTTCATACAGAAGCCAGGCACAGTTTTGGATACATTCTAGGTCAA
ACTTCATAGCCTCCGAGATGGCAGAAGCTTCTACAGCTGCAGTCTTGGAGAAGAAGGATAATGGAGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTATATCTGAGGAGAAAAAGCTGCATGTTGTTTTTGTTTTGGGTGGACCAGGAAGTGGAAAAGGTACTCAGTGTGAAAAGATTGTTGAAAATTTTGGTTTTACA
CACCTAAGTGCAGGAGATCTTCTGCGCGCTGAGATTAAATCAGGCTCTGAAAATGGAACAATGATCGAGAATATGATAAAGGAAGGAAAGATTGTCCCCTCAGAAGTGACAGTTAAGCTCTTGCAAAAGGCAATGCAGGAAAGTGAGAATGATAAGTTTTTGATTGATGGGTTTCCTCGAAATGAAGAAAACCGTGCAGC
ATTTGAAAATGTTACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGCA
AGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCATCAGCATTTATTGATAACAAGGGTGGTTGAAGTCATCGAATATCAAAGCTACTGCAGTATCTTGGCGTTCTGTATCAAATT
GTATGAGCCTTCCTAGGATATACGTTCCTTGTATGCCAATGACCATTAAACTCTTTACTACCTAATATTAAGGATAAGACTATTGGAAAAAACTTTTAGATAAAAGGTTTGTCAGGTGAATTACATAGGCATTTATATTGGTTCCTATTGCAGTTCTTATTCTACAAGAGGTTAGTTTGAGATTTCTCACGAGATTTATC
CAAGGTAATTTAGTTTCTTCTGGATGAAGATGCAAAGGAGATGAAAATAATCTACTGATTTTTCTATATGACACGGTTGCTTGGTAGGAGGGCATTTGCTTTCTACTGCACTGTAGTTGTTCGCCTTATCTTGGAGAGGAATTCTGGAGTTATTGTTATTGTTGGTAGGCACATAACCATGTGATTCATACTTGTTAATT
AACAGCTGCAGATTTTGAGGTGAAACTTCATGTTTGACTGAAATTGCATATTCACCGAAAATGAAGTGAATATTTTACAAATTGTCGGTGCGGTATCAAATGGTGTAGAATCTGTTCTGTAAGCTAATAATGGCAGAGAACTTGATATTTTTTGGGTTATTGTACTATGTCAAACACTTTTT
>TRINITY_DN118305_c4_g1_i4 from sample A1 / Example unspliced isoform:CTTTATGGGAAATACTGAATTTGGCTTTTACAAGCCAATTCCTGCTTAAAAAGCCACAATTCCCCTAAGCTAAGAGGGGGGATGGTTTTCAGGAAAAGTAGCCTTACACGTGGAATTCCACAAACCCAATTGCAAACAACCAAGATGTGCACCAATTTTTTTGCAGGTTTCACCTAATCATCCAAGTGTCTTCAAGCAGT
CGGCCTTTCCGAGAAAGTGGGGCAGTGAAAAGATAGTTAAATTCAGCCTGCAACCTTGCTCAAAAACACTTGGCAGATGGGCATCTCCGGAAAACATGCATAACCGTTTCCCCTCTATCACAAAGCTTGCATGCAACATTTGTAACACCAATTTTTTGAAGCCTAGTCTTGACAGCCAAACCTTTGTGGAGCATAAGCTA
CCCCAAGGAAGATTGAGATTTCCTAGTAGACTGGCACCTCCTCAGCCCTTGGCTTTTATAATCCCTCAGCCTCTGTCTTCTGTTCAAGCATGGAACAAGTTTGGTGGTGCATCCTACAAGAGCATAGATGCCGCTTTTCACATAGTTGTAGAAGGCCTTCCGGCTACTCCATCACAAATGGTGGCAGCCATACATACACA
TACCTTATTCAGAACCAACATCATTTGTCACAATAACTTAGCTAGGAAATATTATTGAAAATTATTGCATGTTGATATTTACTTCACCTCCTGCTGCTTCAATCTGTTGTTCTGGGTATTCATGGTTGTATTGTCAGGTTGGTATTGGTAGGGATTGTTATGGGTAAGAGTCCAAGGCATTTAAATATCGAGGTTGAATT
AGATATATACACACCACTGAATGCAAAATTAGGTTACAGGTACAGCAAGATGGTTAGAGACAAACACAGATGTGGATCTGGCTCCATTTGTCACAATAACTTAGCCAGCAAAATAGAATGTACAATCAGGGATGTTTAGATTTTTTTTACCATCGATTTTGCTTCATGTTGTTGGCCTCTAAGCCCTTTGGCTGCCCAAT
TTTTTCCTTGTTTGGTACTCAGATTTTTCCATCAGTTTGCATTTATTTGTATCGATTTCACTGGCATTGCCATTAGTTTGACCTTATAGGACTTGTTGTATTTCTGTGATGTTTGCTTATATTCTGTAAATGGCCGTAAGAAAATATCTTGTATCAAAGAATTTACAGAATTTCAGTTTGAACAGACAAATTCAAGAACA
TACTCTTGTCTAGAACCATACCATTGTATTGGAAGATTCAAGACTGTTCAGCCATCACAAGTTTTCCTTTTTGTAGGTGTTTTTTCTAGAATTGTCAAGAAATACATAAAGAATTATGTAAGATTTTATATATTTCTATTATCAAGATTCTTGTGAATCAGGTTCACATGGGGATTGCTGACCTTTAAAAAGCAATGAAA
TTCACCTACTGATAAGTTTGTAATGGTGCTTTTTATGCCAAGCAGCTAGGTGGTTCTTTTGTAATAGTGATAGTAACTATATAAATAATTTTACAGACAGGGATTCAACCAGAATTTATTCTTTTCTTCAACTGTCCCGAGGAAGAGATGTTGAAGCGGCTTCTAAACAGGAACCAGgtaagcttagtaggcaattcttt
tccttcaccattttgagtactttttatatgatcaaaaaatctatctatagagctgaatgatttcactttatttatcaagaatttttgttttgcagGGCCGAGTCGATGACAATGTAGAGACAATAACCAAGCGCTTCAGAGTCTTTGCTGAATCTAGTCTACCAGTTGTGAATTACTATGACTCGAAGGGGAAGGTTCGC
AAGGTGATAGCAATTTATTTATAGCAATTTAAGTGATTCTAATGTTAACTATAAGTCTACAAGTTTTTGGTTATTGTGACTTGAAGGGGAAAGCTGAGAAGTAATATGCTTGCCAGTTTCACTGTTACCTGTTTATTTAGAGCAGTTTAAAAGATTCTCATATGAACCAAATTTGGAGTATTTGTTAGAACTTGGGATTC
AGGAATTGACGTTTTCACTAAAATTGTTAATTTCCTTCTTGATTCCTGCAATAGGCTATCCCTTTCTGTCCATCTTTCATCCAATTTGGTTCATTTTATTGGCTAATTGAATACTAAATGTGATTACATGGCAGCTTCCTTCAATATTTTGTTGAAATCTGAGTCACGTTCATCATATATGCTGGAATATTTTATGGATA
TGGAAAACCTGTGCAGACTGTTTCTAGTTCCTTCAAATCCTTTTTTACTTTTGTGAACTAATTTATTTTTCAAGCACGTGCAGATTGATGCAGTGAAGACAAAAGAAGAAGTCTTTGAGGATATTAAACTACTTTTTGCAACTAACATTCAAGAAAACGAGGAAGTAGAAGCTGGGACTCTCAATTGAATTCAAGTATCA
TCAGCATTTATTGATAACAAGGTAATTAATTCTTATGAGATTAAGGTTTGTTTGTATTTTTCACCAAGTAACACAGCTTTGGAAATGCACATCCTACACAGCTCTTTTGAGAATAATTAATTTGCAACTGTACAATGAGTTTTGGTTTTTCTAGTATTTGTAGTCTATAAACTTCCGTTTCATAATATAAGCAATGTTTC
CTGATTTTGCAATGGAAC