sp|F4JKH6|REC2_ARATH ----> Protein REDUCED CHLOROPLAST COVERAGE 2
Intron 1 GTTGCTAAAA ... CTTGACTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.58 | 25 | 11 | 10 |
| A2 | 29.17 | 17 | 8 | 6 |
| A3 | 35.71 | 18 | 8 | 12 |
| A4 | 18.92 | 15 | 1 | 6 |
| A5 | 41.18 | 5 | 7 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 0 | 4 | 0 | 0 |
| A8 | 33.33 | 1 | 0 | 1 |
| A9 | 14.29 | 3 | 0 | 1 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN118265_c0_g3_i3 from sample A3 / Example spliced isoformTAAAATTTAAAATTGTGTCTGTTTGATGATATTCAATCAGGTTGAACTTGCAAACAAACTTCCTCATGTGCAATCACTTTGCATTCATGAAATGGTGGTCCGGGCCTTCAAGCACATATTACAAGCAGTTATTGCTTCCGTTGGAAGGACATCAGACTTGGCTGCATCAATTGCTGCAGCTTTGAATATTATGCTTGGAA
CACCATCAAACAAAAACAGTGATCAGAATTCCATCAATGCAGATTCCCTTAAATGGAAATGGGTAGAGGTGTTTCTGTCAAAAAGATTTGGATGGAAAATCAATAATTTCAATCGCCAAGATTTGAGAAAGTTTGCAATTTTACGGGGCCTTTGCCATAAGGTGGGACTTGAGTTGGCTCCTAGAGATTATGATATGGAC
AGCGCAAACCCATTCAGGAAAGTAGACATTATCAGCATGGTTCCAGTGTATAAGCAAGTTGCATGCTCATCTGCAGATGGTCGAACCTTGCTAGAATCATCAAAAACTGCTCTGGACAAGGGGAAACTAGATGATGCTGTTAACTATGGGACCAAGGCTCTTGCAAAGCTGGTGGCAGTCTGTGGTCCTTACCATCGAAT
GACAGCTGGAGCATATAGCTTGTTAGCTGTTGTATTGTATCATACAGGAGATTTCAATCAGGCAACAATATATCAACAAAAGGCTTTGGATATCAATGAGAGAGAACTAGGTCTTGACCATCCAGATACCATGAAGAGTTATGGCGACCTTGCTGTATTCTATTATCGGCTTCAGCACACTGAATTGGCTCTAAAGTATG
TCAACCGTGCATTATATCTTTTGCACTTGACTTGTGGACCATCACACCCAAACACTGCTGCAACATACATCAATGTCGCCATGATGGAAGAAGGTCTGGGAAATATACATGTAGCTCTCAGGTATCTGCATGAGGCCCTAAAATGTAATCAAAGACTGCTTGGAGCAGATCATATACAGACTGCTGCTAGCTATCATGCA
ATAGCTATTGCTCTTTCATTGATGGAAGCATACTCTTTAAGTGTTCAGCATGAGCAGACTACTTTACAAATTTTACAGGCCAAACTTGGTCCAGAGGATTTACGCACACAGGATGCTGCTGCCTGGCG
>TRINITY_DN118265_c0_g3_i4 from sample A3 / Example unspliced isoform:CCAGCTGGTCAGAGAATGTTAATAAGATGGGAACTTGGAGCATGCTGGGTACAGAATTTACAAAATCAATCAACTGCTGAAAATGTTGAGACAAAGCCTAGTGAAGAAATTAAGAGTGAACCCACCGTAAAAGGATTAGGGAAACAATTTGGGTTGCTAAAAGAGATTAAAAAGAAAACAGATGATAAAAACAAGAAAGT
TGACCCAACCAAAACAAATTCCTTGGATGCTTCAGCTGGTAGTGAAATTGAAAGTCACAAAAAGGAGGGGTCAGAGGAAGCTGTTCAACTTGAAGTTGACAAAGAAGAATCTGATAGTGAGCTAGCATTGAGAAAACTCCTTCCAGAAGCTGCATTTATCCGGTTAAAAGAATCAGAAACTGGCCTTCACCGCAAGTCTA
TGAATGAGCTGATTGAGATGGCTCAGAAATACTATGATGATGTAGCCCTACCAAAACTGGTATCAGACTTTGGTTCATTAGAATTATCACCTGTGGATGGTAGGACACTGACTGACTTTATGCATACACGAGGATTACAAATGCGTTCCTTAGGTCGTGTGGTTGAACTTGCAAACAAACTTCCTCATGTGCAATCACTT
TGCATTCATGAAATGGTGGTCCGGGCCTTCAAGCACATATTACAAGCAGTTATTGCTTCCGTTGGAAGGACATCAGACTTGGCTGCATCAATTGCTGCAGCTTTGAATATTATGCTTGGAACACCATCAAACAAAAACAGTGATCAGAATTCCATCAATGCAGATTCCCTTAAATGGAAATGGGTAGAGGTGTTTCTGTC
AAAAAGATTTGGATGGAAAATCAATAATTTCAATCGCCAAGATTTGAGAAAGTTTGCAATTTTACGGGGCCTTTGCCATAAGgttgctaaaatttttgtgagaatctgattagcaaattcagtgatattaagggctcctttatcataacattgactgtggtcttccaatacattaagcatatctactctttcttgactta
gGTGGGACTTGAGTTGGCTCCTAGAGATTATGATATGGACAGCGCAAACCCATTCAGGAAAGTAGACATTATCAGCATGGTTCCAGTGTATAAGCAAGTTGCATGCTCATCTGCAGATGGTCGAACCTTGCTAGAATCATCAAAAACTGCTCTGGACAAGGGGAAACTAGATGATGCTGTTAACTATGGGACCAAGGCTC
TTGCAAAGCTGGTGGCAGTCTGTGGTCCTTACCATCGAATGACAGCTGGAGCATATAGCTTGTTAGCTGTTGTATTGTATCATACAGGAGATTTCAATCAGGCAACAATATATCAACAAAAGGCTTTGGATATCAATGAGAGAGAACTAGGTCTTGACCATCCAGATACCATGAAGAGTTATGGCGACCTTGCTGTATTC
TATTATCGGCTTCAGCACACTGAATTGGCTCTAAAGTATGTCAACCGTGCATTATATCTTTTGCACTTGACTTGTGGACCATCACACCCAAACACTGCTGCAACATACATCAATGTCGCCATGATGGAAGAAGGTCTGGGAAATATACATGTAGCTCTCAGGTATCTGCATGAGGCCCTAAAATGTAATCAAAGACTGCT
TGGAGCAGATCATATACAGACTGCTGCTAGCTATCATGCAATAGCTATTGCTCTTTCATTGATGGAAGCATACTCTTTAAGTGTTCAGCATGAGCAGACTACTTTACAAATTTTACAGGCCAAACTTGGTCCAGAGGATTTACGCACACAGGATGCTGCTGCCTGGCG
Intron 2 GTGAGGCAGA ... ATTTCCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.31 | 15 | 3 | 19 |
| A2 | 31.91 | 16 | 9 | 6 |
| A3 | 29.41 | 12 | 1 | 9 |
| A4 | 33.33 | 8 | 4 | 4 |
| A5 | 27.27 | 4 | 0 | 3 |
| A6 | 33.33 | 1 | 0 | 1 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 0 | 2 | 0 | 0 |
| A10 | 100 | 0 | 2 | 2 |
>TRINITY_DN98161_c0_g1_i5 from sample A4 / Example spliced isoformGGAGCATGCTGGGTACAGAATTTACAAAATCAATCAACTGCTGAAAATGTTGAGACAAAGCCTAGTGAAGAAATTAAGAGTGAACCCACCGTAAAAGGATTAGGGAAACAATTTGGGTTGCTAAAAGAGATTAAAAAGAAAACAGATGATAAAAACAAGAAAGTTGACCCAACCAAAACAAATTCCTTGGATGCTTCAGC
TGGTAGTGAAATTGAAAGTCACAAAAAGGAGGGGTCAGAGGAAGCTGTTCAACTTGAAGTTGACAAAGAAGAATCTGATAGTGAGCTAGCATTGAGAAAACTCCTTCCAGAAGCTGCATTTATCCGGTTAAAAGAATCAGAAACTGGCCTTCACCGCAAGTCTATGAATGAGCTGATTGAGATGGCTCAGAAATACTATG
ATGATGTAGCCCTACCAAAACTGGTATCAGACTTTGGTTCATTAGAATTATCACCTGTGGATGGTAGGACACTGACTGACTTTATGCATACACGAGGATTACAAATGCGTTCCTTAGGTCGTGTGGTTGAACTTGCAAACAAACTTCCTCATGTGCAATCACTTTGCATTCATGAAATGGTGGTCCGGGCCTTCAAGCAC
ATATTACAAGCAGTTATTGCTTCCGTTGGAAGGACATCAGACTTGGCTGCATCAATTGCTGCAGCTTTGAATATTATGCTTGGAACACCATCAAACAAAAACAGTGATCAGAATTCCATCAATGCAGATTCCCTTAAATGGAAATGGGTAGAGGTGTTTCTGTCAAAAAGATTTGGATGGAAAATCAATAATTTCAATCG
CCAAGATTTGAGAAAGTTTGCAATTTTACGGGGCCTTTGCCATAAGGTGGGACTTGAGTTGGCTCCTAGAGATTATGATATGGACAGCGCAAACCCATTCAGGAAAGTAGACATTATCAGCATGGTTCCAGTGTATAAGCAAGTTGCATGCTCATCTGCAGATGGTCGAACCTTGCTAGAATCATCAAAAACTGCTCTGG
ACAAGGGGAAACTAGATGATGCTGTTAACTATGGGACCAAGGCTCTTGCAAAGCTGGTGGCAGTCTGTGGTCCTTACCATCGAATGACAGCTGGAGCATATAGCTTGTTAGCTGTTGTATTGTATCATACAGGAGATTTCAATCAGGCAACAATATATCAACAAAAGGCTTTGGATATCAATGAGAGAGAACTAGGTCTT
GACCATCCAGATACCATGAAGAGTTATGGCGACCTTGCTGTATTCTATTATCGGCTTCAGCACACTGAATTGGCTCTAAAGTATGTCAACCGTGCATTATATCTTTTGCACTTGACTTGTGGACCATCACACCCAAACACTGCTGCAACATACATCAATGTCGCCATGATGGAAGAAGGTCTGGGAAATATACATGTAGC
TCTCAGGTATCTGCATGAGGCCCTAAAATGTAATCAAAGACTGCTTGGAGCAGATCATATACAGACTGCTGCTAGCTATCATGCAATAGCTATTGCTCTTTCATTGATGGAAGCATACTCTTTAAGTGTTCAGCATGAGCAGACTACTTTACAAATTTTACAGGCCAAACTTGGTCCAGAGGATTTACGCACACAGGATG
CTGCTGCCTGGCTCGAGTATTTTGACTCAAAGGCCATAGAGCAGCAGGAAGCTGCACGTAATGGTACTCCAAAGCCAGATGCGTCCATAGCAAGCAAAGGTCATCTCAGCGTATCAGATCTGTTAGACTACATAAACCCAAATGCAGATGTCAAAGACAAAAAGAAGCAGAATCGTATCAAGTTAAGAGGTAAACTTGTC
CAAAGTCAATGGGATGCACCTACGGATGAATTCACAAAAGATATCAACTTGTCGCCAAGTAACAATGATGAAAAACAATCTCCAGAGCCAGAAGAGAAAGGGGAATCTAATGCAAGAGATGTTGCCCCTAATAAATCAAAAGATGATGTCATTGCACCCAGTGCAGAAGACCAGACAGATGTCTCTGAAGTTTTACAACT
AACTGACAATACGGAGGAAGAAGGATGGCAAGAGGCTGTTCCCAGAGGCCGATCTAGCAATGCAGGGGGTCGTAAATCTGGCTCTAAAAAGCCGAGCCTTGCAAGATTGAACATCACTCAGGCTAACAACACTTTTAATAACTCTGACCCTGCACGCAACAGAGTGAACAATCTTAATGCAAATGCCAATTCATTAGCAC
CCAAAAGGAAAAACATGTCTTCTGGAGCAGGTAATAATTTCCCATCCCAAAGAAATGCTTCTGCAGATATGTATCCATCCCCAAGAAATGCTTCTGCAGATACATCAATTGCAAGAAAATTGGTCAAGGCTTCAACTTTCAATGGTAGACCCATGCAATCAGTCAAGTACAGTACTGGCACCGATACACAATTGGTAAGC
AGTGGC
>TRINITY_DN98161_c0_g1_i3 from sample A4 / Example unspliced isoform:GGAGCATGCTGGGTACAGAATTTACAAAATCAATCAACTGCTGAAAATGTTGAGACAAAGCCTAGTGAAGAAATTAAGAGTGAACCCACCGTAAAAGGATTAGGGAAACAATTTGGGTTGCTAAAAGAGATTAAAAAGAAAACAGATGATAAAAACAAGAAAGTTGACCCAACCAAAACAAATTCCTTGGATGCTTCAGC
TGGTAGTGAAATTGAAAGTCACAAAAAGGAGGGGTCAGAGGAAGCTGTTCAACTTGAAGTTGACAAAGAAGAATCTGATAGTGAGCTAGCATTGAGAAAACTCCTTCCAGAAGCTGCATTTATCCGGTTAAAAGAATCAGAAACTGGCCTTCACCGCAAGTCTATGAATGAGCTGATTGAGATGGCTCAGAAATACTATG
ATGATGTAGCCCTACCAAAACTGgtgaggcagatagactcattgatttcattttcaaataaattgttctggacaaatcttttatataaattttggagcataatttgatatttcttcatttcctcagGTATCAGACTTTGGTTCATTAGAATTATCACCTGTGGATGGTAGGACACTGACTGACTTTATGCATACACGAGG
ATTACAAATGCGTTCCTTAGGTCGTGTGGTTGAACTTGCAAACAAACTTCCTCATGTGCAATCACTTTGCATTCATGAAATGGTGGTCCGGGCCTTCAAGCACATATTACAAGCAGTTATTGCTTCCGTTGGAAGGACATCAGACTTGGCTGCATCAATTGCTGCAGCTTTGAATATTATGCTTGGAACACCATCAAACA
AAAACAGTGATCAGAATTCCATCAATGCAGATTCCCTTAAATGGAAATGGGTAGAGGTGTTTCTGTCAAAAAGATTTGGATGGAAAATCAATAATTTCAATCGCCAAGATTTGAGAAAGTTTGCAATTTTACGGGGCCTTTGCCATAAGGTGGGACTTGAGTTGGCTCCTAGAGATTATGATATGGACAGCGCAAACCCA
TTCAGGAAAGTAGACATTATCAGCATGGTTCCAGTGTATAAGCAAGTTGCATGCTCATCTGCAGATGGTCGAACCTTGCTAGAATCATCAAAAACTGCTCTGGACAAGGGGAAACTAGATGATGCTGTTAACTATGGGACCAAGGCTCTTGCAAAGCTGGTGGCAGTCTGTGGTCCTTACCATCGAATGACAGCTGGAGC
ATATAGCTTGTTAGCTGTTGTATTGTATCATACAGGAGATTTCAATCAGGCAACAATATATCAACAAAAGGCTTTGGATATCAATGAGAGAGAACTAGGTCTTGACCATCCAGATACCATGAAGAGTTATGGCGACCTTGCTGTATTCTATTATCGGCTTCAGCACACTGAATTGGCTCTAAAGTATGTCAACCGTGCAT
TATATCTTTTGCACTTGACTTGTGGACCATCACACCCAAACACTGCTGCAACATACATCAATGTCGCCATGATGGAAGAAGGTCTGGGAAATATACATGTAGCTCTCAGGTATCTGCATGAGGCCCTAAAATGTAATCAAAGACTGCTTGGAGCAGATCATATACAGACTGCTGCTAGCTATCATGCAATAGCTATTGCT
CTTTCATTGATGGAAGCATACTCTTTAAGTGTTCAGCATGAGCAGACTACTTTACAAATTTTACAGGCCAAACTTGGTCCAGAGGATTTACGCACACAGGATGCTGCTGCCTGGCTCGAGTATTTTGACTCAAAGGCCATAGAGCAGCAGGAAGCTGCACGTAATGGTACTCCAAAGCCAGATGCGTCCATAGCAAGCAA
AGGTCATCTCAGCGTATCAGATCTGTTAGACTACATAAACCCAAATGCAGATGTCAAAGACAAAAAGAAGCAGAATCGTATCAAGTTAAGAGGTAAACTTGTCCAAAGTCAATGGGATGCACCTACGGATGAATTCACAAAAGATATCAACTTGTCGCCAAGTAACAATGATGAAAAACAATCTCCAGAGCCAGAAGAGA
AAGGGGAATCTAATGCAAGAGATGTTGCCCCTAATAAATCAAAAGATGATGTCATTGCACCCAGTGCAGAAGACCAGACAGATGTCTCTGAAGTTTTACAACTAACTGACAATACGGAGGAAGAAGGATGGCAAGAGGCTGTTCCCAGAGGCCGATCTAGCAATGCAGGGGGTCGTAAATCTGGCTCTAAAAAGCCGAGC
CTTGCAAGATTGAACATCACTCAGGCTAACAACACTTTTAATAACTCTGACCCTGCACGCAACAGAGTGAACAATCTTAATGCAAATGCCAATTCATTAGCACCCAAAAGGAAAAACATGTCTTCTGGAGCAGGTAATAATTTCCCATCCCAAAGAAATGCTTCTGCAGATATGTATCCATCCCCAAGAAATGCTTCTGC
AGATACATCAATTGCAAGAAAATTGGTCAAGGCTTCAACTTTCAATGGTAGACCCATGCAATCAGTCAAGTACAGTACTGGCACCGATACACAATTGGTAAGCAGTGGC