NA ----> NA
Intron 1 GTGAGTGAGA ... TTTGTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 309 | 103 | 9 |
| A2 | 29.74 | 267 | 113 | 3 |
| A3 | 25.41 | 320 | 109 | 3 |
| A4 | 24.58 | 181 | 59 | 2 |
| A5 | 30.21 | 134 | 58 | 0 |
| A6 | 15.38 | 11 | 2 | 0 |
| A7 | 30.05 | 142 | 61 | 0 |
| A8 | 25.24 | 77 | 26 | 1 |
| A9 | 23.7 | 132 | 41 | 0 |
| A10 | 26.64 | 179 | 65 | 0 |
>TRINITY_DN106506_c1_g1_i8 from sample A3 / Example spliced isoformCTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATTTTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTT
CTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGGCTCTATAGTAGCTTTTAATATATTATATGTACTGCGGAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATG
GATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGGTACATGGACTAACTCGTGGGCAGAGATAGAAGATGTTTTTTTCTGGTTGTTTCATATAATCTACAAGAATTCTGTTGTATCAAAGACTGAAGGATGAAAATAAATCCACCTGACATTGAAACATACCTG
GAAATTGCAGATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAGGTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTCTTTCGAAGGCTGTGCAACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCG
CCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATTCTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACAGGGAATCAGACGGCCTTAATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGT
AATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCTGATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTAAGACTGGTCTACTACGATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAA
GGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGCGTACAATCTCTTACTTCTTGACAG
CGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCACTGGCAGTCCTTTTATCGAGCATGTTTGTCTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCATTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATA
TTGGGCAGTTCTCTCCACACTTTGTGTGGCTTTTGCGTGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATAACCCCACGAGAGTATTTGGAGCTAGCCCTGAAACCGATGCCTGGCGCTGGAAAGGATATTGCAGCGAAGAATGAGATTCGTGAGTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCCCT
CTAGTACGCCCGTTAAATAATGAGAAAGATCTGCAGCGACTGGATCAGATTGCCATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGACCTATACTTGCAGGGCTTACTCAATCGTTCTTGGATGCTCT
TAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGTTTGAGTGATTATTTAAGTCATGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGCTTATGATTCTGCCATTGAAGCATACACGGGGGCCTTTGACCGATCAAAACCACCTGATGAGGTTGCTTTGCAAGAAACACATGAGTCTGCATTACAAAAGG
>TRINITY_DN106506_c1_g1_i10 from sample A3 / Example unspliced isoform:CTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATTTTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTT
CTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGGCTCTATAGTAGCTTTTAATATATTATATGTACTGCGGAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATG
GATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAGGTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTCTTTCGAAGGCTGTGC
AACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCGCCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATTCTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACAGGGAATCAGACGGCCTT
AATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGTAATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCTGATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTAAGACTGGTCTACTAC
GATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGGCCTTTGGATGTGGAG
TGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGCGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCACTGGCAGTCCTTTTATCGAGCATGTTTGTCTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCATTTATCTCTTGTTA
CCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTCTCTCCACACTTTGTGTGGCTTTTGCGTgtgagtgagatattcttttttttcttaaaattttgggaaaagctttaatttatacagaaactatgttgaaaatttaaacccttctaacatgtagtctgactg
atgtaatcattctttatgatgacgagtcaccaatataaatacttgtagctatcttatcttgggacctgtactcatattttccttcagcttatattggtttgtcacgaaagcataattcagattattacaagcttgaaagtttagataaaagaaactgtgatttaatcaaagatgaatgaattggtttaacacaaatgggt
ttgttttgatggaaaaattacaaggtctatactaattcttatgaagttgtgtttgtaatatacccctttatgccaggtatatttattgttttgagcaacttgattatttgccatgttgattaatgcatttatttatttttcctgtatatacaggtaacagaaatcaaataacatataataatttgctgttctaacaaatg
tatattctttaggtaattgttgaacatcaacacgctctaaagttcttgagattttgtggcagGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATAACCCCACGAGAGTATTTGGAGCTAGCCCTGAAACCGATGCCTGGC
Intron 2 GTACATGGAC ... GAAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.06 | 59 | 22.7 | 81.7 |
| A2 | 63.83 | 51 | 29.5 | 90 |
| A3 | 65.79 | 52 | 40.5 | 100 |
| A4 | 57.14 | 57 | 21 | 76 |
| A5 | 60.24 | 33 | 13.7 | 50 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 59.18 | 20 | 6.3 | 29 |
| A8 | 50 | 9 | 8.5 | 9 |
| A9 | 60.71 | 22 | 8 | 34 |
| A10 | 60.87 | 18 | 16.5 | 28 |
>TRINITY_DN106506_c1_g1_i11 from sample A3 / Example spliced isoformCTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATTTTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTT
CTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGGCTCTATAGTAGCTTTTAATATATTATATGTACTGCGGAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATG
GATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAGGTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTCTTTCGAAGGCTGTGC
AACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCGCCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATTCTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACGGGGAATCTGACGGCCTT
AATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGTAATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCTGATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTAAGACTGGTCTACTAC
GATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGGCCTTTGGATGTGGAG
TGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGCGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCACTGGCAGTCCTTTTATCGAGCATGTTTGTCTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCATTTATCTCTTGTTA
CCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATAACCCCACGAGAGTATTTGGAGCTAGCCCTGAAACCGATGCCTGGCTCTGGAAAAGATATTGCG
GCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCACTCTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATT
AACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGG
>TRINITY_DN106506_c1_g1_i2 from sample A3 / Example unspliced isoform:CTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATTTTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTT
CTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGGCTCTATAGTAGCTTTTAATATATTATATGTACTGCGGAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATG
GATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGgtacatggactaactcgtgggcagagatagaagatgtttttttctggttgtttcatataatctacaagaattctgttgtatcaaagactgaaggatgaaaataaatccacctgacattgaaacatacctg
gaaattgcagATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAGGTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTCTTTCGAAGGCTGTGCAACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCG
CCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATTCTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACAGGGAATCAGACGGCCTTAATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGT
AATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCTGATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTAAGACTGGTCTACTACGATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAA
GGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGCGTACAATCTCTTACTTCTTGACAG
CGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCCTTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCATTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATA
TTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATAACCCCACGAGAGTATTTGGAGCTAGCCCTGAAACCGATGCCTGGCTCTGGAAAAGATATTGCGGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCACT
CTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGG
CCCTATATTTGCAGGGCTTACACAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGCTTATGATTCTGCCATTGAAGCATACACAGGGGCCTTCGACCAATCAAAACCAGCTGATGAGGTTGCTTTGCAAGAAGCGCATGAGTCTG
CGTTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAGTGGGAGCTGGTACTGCAATGCAGAAGTATGAGAAAATGGTTCAAACTACCTTGAAAAA