sp|Q9CAN5|PPR98_ARATH ----> Pentatricopeptide repeat-containing protein At1g63080, mitochondrial

Intron 1 GCCGGGCAAA ... GCTCTTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	25.81	46	16	2
A2	13.16	33	5	2
A3	47.37	20	18	0
A4	50	8	8	0
A5	47.06	9	8	1
A6	27.27	8	3	0
A7	37.14	66	39	7
A8	33.33	32	16	4
A9	27.27	48	18	0
A10	25.27	68	23	1

>TRINITY_DN47087_c2_g1_i8 from sample A10 / Example spliced isoform

GGCCACCAGCCCAACACAATCACATTTAACACGCTCATGGATCGACTATGCAAAGAAGGTAAGCTCCAAGAGGCCAATAAACTACTGTATCACATGTTAACAAAAGGGTATAACCCTAATGTCGTTACGTATAATGCCCTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTTTCCATGAAAT
GCCCAGGAAAAACATATGCCCAAACGTTGTCACTTACAATGCACTGATGGGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGGTTAGTGGTTTTTGCAAAGAGGGCCAA
CCGGACAAAGCTATGGAGCTCTTCCATGAAATGTCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGATGAGTGGTTTTTGCAAAGAGGGCCAACTGGACAAAGCTATGGAGCTCTTCCATGAGATACCCAGGAAAAACATATGCCCAAACGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAA
AGAAGGCCGGGCAAACCGGACTGGAAAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGGGGCAAACTGGAAAAAGCTATGGAGCTCTTCCAGGCCAACCGGACAAAGCTA

>TRINITY_DN47087_c2_g1_i11 from sample A10 / Example unspliced isoform:

GGCCACCAGCCCAACACAATCACATTTAACACGCTCATGGATCGACTATGCAAAGAAGGTAAGCTCCAAGAGGCCAATAAACTACTGTATCACATGTTAACAAAAGGGTATAACCCTAATGTCGTTACGTATAATGCCCTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTTTCCATGAAAT
GCCCAGGAAAAACATATGCCCAAACGTAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAGCGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAAGgccgggcaaaccggactggaaaaagctatggagctcttccatgaaatgcccccaggaaaaac
atatgcccaaaaaaataacgttgtcacatacaatgcactgatctcccctaggggcaaactggaaaaagctatggagctcttccagGCCAACCGGACAAAGCTATGTTGTCACATACACTGTTTTTATTCATAGTTTCTGTAAGGAAGGGCGATGGCAAGAGGCCACCAAGGTGCTTCGTGAGATGCTGGATAAGGGACAC
ACTCCAAATGTTATCACATACAATGCATTTATTGATGGCTGGTGTAAAGAAGGTAAGCTTCAAGAAGCTCTCCAGTTGTTAGATGTTATGGTGCAAATAGGCCGTCAGCCTAACGAATTCACATACAATATACTTATAAATGGGTTTTACAAGGCGGGTAATTTGGAGAGGTCCAAGGAGCTCCTTCAAGAGATGTTGGA
GAAAGGG

Intron 2 GCCGGGCAAA ... GCTCTTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	3.6	39	0	2
A2	18.33	25	4	2
A3	8.65	24.3	4	0
A4	0	11	0	0
A5	5.78	8.7	0	1
A6	0	5.7	0	0
A7	11.79	62	6	7
A8	6.64	39.7	0	4
A9	4.67	43	3	0
A10	1.17	53.7	0	1

>TRINITY_DN47087_c2_g1_i12 from sample A10 / Example spliced isoform

GGCCACCAGCCCAACACAATCACATTTAACACGCTCATGGATCGACTATGCAAAGAAGGTAAGCTCCAAGAGGCCAATAAACTACTGTATCACATGTTAACAAAAGGGTATAACCCTAATGTCGTTACGTATAATGCCCTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTTTCCATGAAAT
GCCCAGGAAAAACATATGCCCAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGTCCTGATGTCGTCACATACAGTGCACTTATGGATGGTCTCTGTAAGGAAGGAAAGGCGGATGAGAGTATGAAGCTCTTCTATGAAATGTCCAAAGGCCAACCGGACAAAGCTATGGAGCTC
TTCCATGAAATGCCCAGGAAAAACATATGCCCAAAAAAATCTCCCCTGAAGGCCAACCGGACAAAGCTATGTTGTCACATACACTGTTTTTATTCATAGTTTCTGTAAGGAAGGGCGATGGCAAGAGGCCACCAAGGTGCTTCGTGAGATGCTGGATAAGGGACACACTCCAAATGTTATCACATACAATGCATTTATTG
ATGGCTGGTGTAAAGAAGGTAAGCTTCAAGAAGCTCTCCAGTTGTTAGATGTTATGGTGCAAATAGGCCGTCAGCCTAACGAATTCACATACAATATACTTATAAATGGGTTTTACAAGGCGGGTAATTTGGAGAGGTCCAAGGAGCTCCTTCAAGAGATGTTGGAGAAAGGG

>TRINITY_DN47087_c2_g1_i10 from sample A10 / Example unspliced isoform:

ATGGAGCTCTTCCATGAAATGCCTAGGAAAAACATCTGCCCAGACGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAGGGCAAACTGGAAAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACACTGCACTGATTAGTGGTTTTTGCAAAGAAGGCCAACC
GGACAAAGCTATGGAGCTTTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACTTACAATGCACTGATGAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGTCCTGATGTCGTCACATACAGTGCACTTATGGATGGTCTCTGTAAGG
AAGGAAAGGCGGATGAGAGTATGAAGCTCTTCTATGAAATGTCCAACCCAAACGTTGTCACATACAATGCACTGGTTAGTGGTTTTTGCAAAGAGGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGTCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGATCGTTGTCACATACAGTGCA
CTGATTAGTGGTTTTTGCAAAGAAGgccgggcaaaccggactggaaaaagctatggagctcttccatgaaatgcccaggaaaaacatatgcccaaaaaaataacgttgtcacatacaatgcactgctcccctgagggcaaactggaaaaagctatggagctcttccagGCCAACCGGACAAAGCTATGTTGTCACATACA
CTGTTTTTATTCATAGTTTCTGTAAGGAAGGGCGATGGCAAGAGGCCACCAAGGTGCTTCGTGAGATGCTGGATAAGGGACACACTCCAAATGTTATCACATACAATGCATTTATTGATGGCTGGTGTAAAGAAGGTAAGCTTCAAGAAGCTCTCCAGTTGTTAGATGTTATGGTGCAAATAGGCCGTCAGCCTAACGAA
TTCACATACAATATACTTATAAATGGGTTTTACAAGGCGGGTAATTTGGAGAGGTCCAAGGAGCTCCTTCAAGAGATGTTGGAGAAAGGG

Intron 3 GCCAACCGGA ... ATGCACTGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	30.32	77	48	19
A2	36.67	57	40	26
A3	35	39	34	8
A4	39.47	23	16	14
A5	35.14	12	9	4
A6	15.38	11	2	2
A7	21.13	112	47	13
A8	20.62	77	31	9
A9	30.83	83	55	19
A10	28.3	95	54	21

>TRINITY_DN47087_c2_g1_i7 from sample A10 / Example spliced isoform

GGCCACCAGCCCAACACAATCACATTTAACACGCTCATGGATCGACTATGCAAAGAAGGTAAGCTCCAAGAGGCCAATAAACTACTGTATCACATGTTAACAAAAGGGTATAACCCTAATGTCGTTACGTATAATGCCCTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTTTCCATGAAAT
GCCCAGGAAAAACATATGCCCAAACGTTGTCACTTACAATGCACTGATGAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGGTTAGTGGTTTTTGCAAAGAGGGCCAACCGGACAAAGCTATGGAGCTCT
TCCATGAAATGTCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGATCGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGAGGCCAACCGGACA
AAGCTA

>TRINITY_DN47087_c2_g1_i7 from sample A10 / Example unspliced isoform:

GGCCACCAGCCCAACACAATCACATTTAACACGCTCATGGATCGACTATGCAAAGAAGGTAAGCTCCAAGAGGCCAATAAACTACTGTATCACATGTTAACAAAAGGGTATAACCCTAATGTCGTTACGTATAATGCCCTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTTTCCATGAAAT
GCCCAGGAAAAACATATGCCCAAACGTTGTCACTTACAATGCACTGATGAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGGTTAGTGGTTTTTGCAAAGAGGGCCAACCGGACAAAGCTATGGAGCTCT
TCCATGAAATGTCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGATCGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAAGgccaaccggacaaagctatggagcttcttccatgaaatgcccaggaaaaacatatgcccaaacgttgtcacatacaatgcactgagGCCAACCGGACA
AAGCTA

Intron 4 ATGCACTGAT ... GTTTTTGCAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	84.92	15	75	94
A2	76.16	18	50	65
A3	95.16	3	58	60
A4	83.56	6	27	34
A5	85.71	4	20	28
A6	75	2	5	7
A7	86.56	16	95.5	110.5
A8	86.42	11	63	77
A9	88.34	13	95	102
A10	83.33	23	103	127

>TRINITY_DN44370_c1_g1_i2 from sample A8 / Example spliced isoform

AGGAAAAACATATGCCCAAACGTTGTCACATACAAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAGCGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAGGGCAAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATCTG
CCCAGACGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGACGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGGTTTTACAATGCACTGATGAGTGGTTTTTGCAAAGAGGGCCAACCGGACAAAGCTATGGAGCTTTTC
CATGAAATGCCCAGGAAAAACATATGCCCAGACTTTGTCACATACAATGCACTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAAGGTCACATACAGTGCACTGATTAATGGTTTTTGCAAAGAAGGCCAACC
GGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAGACTTTGTCACATACAATGCACTGATT

>TRINITY_DN44370_c1_g1_i6 from sample A8 / Example unspliced isoform:

AGGAAAAACATATGCCCAAACGTTGTCACATACAatgcactgattagtggtttttgcacAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAGAAGCGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAGGGCAAACCGGACAAAGCTATGGAGCTCTT
CCATGAAATGCCCAGGAAAAACATCTGCCCAGACGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGACGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGGTTAGTGGTTTTTGCAAAGAGGGCCAACCGGACAAAGCTA
TGGAGCTTTTCCATGAAATGCCCAGGAAAAACATATGCCCAGACTTTGTCACATACAATGCACTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGATTGAGTGGTTTTTGCAAAGAGGGCCAACA
ATGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAGACTTTGTCACATACAATGCACTGATTAGTGGTTTTTGCAAAGAGGGCAAACTGGAAAAAGCTATGGAGCTCTTCCATGATATGCCCAGGAAAAACATATGCCCTGATGTCGTCACATACAG
TGCACTTATGGATGGTCTCTGTAAGGAAGGAAGGGCGGATGAGAGTATGAAGCTCTTCTATGAAATGTCCAAAAAAAATATCTCCCCTAGTGTTGTCACATACACTGTTTTTATTCATAGTTTCTGTAAGGAAGGGCGATGGCAAGAGGCCACCAAGGTGCTTCGTGAGATGCTGGATAAGGGACACACTCCAGATGTTA
TCACATACACTGCTTTTATTGATGGCTGTTGTAAAGAAGGTAAGCTTCAAGAAGCTCTCCAGTTGTTAGATGTTATGGTGCAAATAGGCCGTCAGCCTAACGAATTCACATACAATATACTTATAAATGGGTTTTACAAGGCGGGTAATTTGGAGAGGTCCAAGGAGCTCCTTCAAGAGATGTTGGAGAAAGGGTGCAAG
CCTAACCTCGTTAGCTATACTACACTGATAGATGGACTCTGTAAGCATCGCAAGATAAATGAAGCTCAACAAATCTTCCATGAGATGCCAAAACAGGGTTTGAGCCCTGATGTTGTTACATATAGGACATTGATGGATGGACTCTGCAAAGTGGGTAATTTTAAGGAAGGAATAAAGTTATTTAAACAGATGAAAGATAG
TAGTCATGTCCCTAATATGATTACACATAC

Intron 5 GCCGGGCAAA ... GCTCTTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80.91	21	89	0
A2	81.97	11	50	0
A3	83.65	17	87	0
A4	90.57	5	48	0
A5	88.14	7	52	0
A6	84.21	3	16	0
A7	82.43	39	183	0
A8	82.35	21	98	0
A9	85.53	23	136	0
A10	81.77	35	157	0

>TRINITY_DN47087_c2_g1_i11 from sample A10 / Example spliced isoform

GGCCACCAGCCCAACACAATCACATTTAACACGCTCATGGATCGACTATGCAAAGAAGGTAAGCTCCAAGAGGCCAATAAACTACTGTATCACATGTTAACAAAAGGGTATAACCCTAATGTCGTTACGTATAATGCCCTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTTTCCATGAAAT
GCCCAGGAAAAACATATGCCCAAACGTAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAGCGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAAGGCCGGGCAAACCGGACTGGAAAAAGCTATGGAGCTCTTCCATGAAATGCCCCCAGGAAAAAC
ATATGCCCAAAAAAATAACGTTGTCACATACAATGCACTGATCTCCCCTAGGGGCAAACTGGAAAAAGCTATGGAGCTCTTCCAGGCCAACCGGACAAAGCTATGTTGTCACATACACTGTTTTTATTCATAGTTTCTGTAAGGAAGGGCGATGGCAAGAGGCCACCAAGGTGCTTCGTGAGATGCTGGATAAGGGACAC
ACTCCAAATGTTATCACATACAATGCATTTATTGATGGCTGGTGTAAAGAAGGTAAGCTTCAAGAAGCTCTCCAGTTGTTAGATGTTATGGTGCAAATAGGCCGTCAGCCTAACGAATTCACATACAATATACTTATAAATGGGTTTTACAAGGCGGGTAATTTGGAGAGGTCCAAGGAGCTCCTTCAAGAGATGTTGGA
GAAAGGG

>TRINITY_DN47087_c2_g1_i8 from sample A10 / Example unspliced isoform:

GGCCACCAGCCCAACACAATCACATTTAACACGCTCATGGATCGACTATGCAAAGAAGGTAAGCTCCAAGAGGCCAATAAACTACTGTATCACATGTTAACAAAAGGGTATAACCCTAATGTCGTTACGTATAATGCCCTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTTTTCCATGAAAT
GCCCAGGAAAAACATATGCCCAAACGTTGTCACTTACAATGCACTGATGGGTCACATACAGTGCACTGATTAGTGGTTTTTGCAAAGAAGGCCAACCGGACAAAGCTATGGAGCTCTTCCATGAAATGCCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGGTTAGTGGTTTTTGCAAAGAGGGCCAA
CCGGACAAAGCTATGGAGCTCTTCCATGAAATGTCCAGGAAAAACATATGCCCAAACGTTGTCACATACAATGCACTGATGAGTGGTTTTTGCAAAGAGGGCCAACTGGACAAAGCTATGGAGCTCTTCCATGAGATACCCAGGAAAAACATATGCCCAAACGTTGTCACATACAGTGCACTGATTAGTGGTTTTTGCAA
AGAAGgccgggcaaaccggactggaaaaagctatggagctcttccatgaaatgcccaggaaaaacatatgcccaaacgttgtcacatacaatgcactggggcaaactggaaaaagctatggagctcttccagGCCAACCGGACAAAGCTA