sp|O22793|MORF2_ARATH ----> Multiple organellar RNA editing factor 2, chloroplastic

Intron 1 GTGCATTTTC ... ATTTATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	72.42	2	1	10.1
A2	55.56	2	3	2
A3	100	0	1	2.4
A4	48.57	4	7	0.6
A5	85.71	0	0	2.6
A6	42.55	20.4	28.7	1.6
A7	64.33	3.4	5	7.3
A8	44.26	7	5	6.1
A9	46.34	7.7	10.4	2.6
A10	50	2	3	1

>TRINITY_DN41177_c1_g1_i1 from sample A6 / Example spliced isoform

GCTGTCCTTGCATAACCCATCCTAACGGTATGGGAAAAAATAAAAAATATGATAATTATTTCAGCCCTGCAAGTTGCTTATTGATTGCCAACCATTTTAAACTATTACTTCTCTGGCCTTAAATATGATAGGATATTTGTTTGCAAAATATCTAAAACCCTGAACCCTCCATGGTTTCTGTTATCTCTTGTAGCATCACA
GAGCCTGCTTGCGCTTCGTTTTCTTCTTCTTCCAACCCAGCGGCCGCCATGCCTCTCGTTCTCTCTCGCACCATCCGCCTGCGTCCGGTTATCGCATTCTCGTTCACTGTGAGAAGGTTCTCGGCACAATCACCGCACCATATATCTTCTGCCTACGTCGGCTTATCCTGTAGGCTACTCAACAACCATCTGCTCGCCAT
CCCCCATGGAGTAGTACAGGCGCCCAAGGTTTCAGTGAACCGGGTCACTGTACGCTGCAAGGTGACCAACAATTCAGGGTATTCTCCGCTTTCGAAGTCGTCGCCGAACTGGAGCGACCGGCCACCCGTGGAGACCGCGCCCCTTTTCCCTGGCTGCGACTATGAGCATTGGCTCATTGTCATGGACCCTCCCGACGAAG
GCAAGGGCCCCAAGGAGGAAATGATTGACTGCTATATCAAAACCCTCGCTAAGGTTTTGGGAAGCGAGGACGCAGCAACGAAATCCATCTACAATGTGTCCTGCGAACGATACTATGGATTCGGATGCCAGATCGACGAGGATACCTCCAATAAACTCGTGGGGCTTCCTGGAGTAGTATTTGTTCTGCCAGATTCATAT
GTGGATGCGGAATATAAGGATTATGGAGGGGAACTATTTGTCGATGGGAAGACAGTTGAGAGGTCTGCAGAAAGACAGCGGCGTGTCACTCCTGCTCCTCAGCGGAACAACGGTGGCAGACCCAGATACAATGAAAGAACAAGATCTGCCAGGCAAAGAGAAATTCAGAGTCAAGGTCGTTGAGCAGCATTGCTTCTCTT
GAAATAAGAGAATATAGATAAATGATAGTGCTTCAATGTTGGTGCATTTTCAATGGACTATATCACTCCGATTGTGATATGATGTTGGTCGTTGAGCAGCATTGCTTCCCTTGAAATAAGAGATTATAGATAAATGATGGTCGTTGAGCAGCATTGCTTCTCTTGAAATAAGAGAATATAGATAAATGATAGTACTTCAA
TGTTGGTGCATTTTCAATGGACTATATCTCTCCAATTATGATATGATGGTGCTTCAAAGTGATTATCGTTGGAACATCTTTTGATTGGTTGTTTGCTGGACACCTTCATAGTAGGGGGAGCTCGAAGTGTGGGCGAAGTTTTGTTTTTATGAAGAGCAAGTTAGCAGAGTCATGTAAAGCTAGCATTTCCAATGCTTTGT
TATATGGACTTCATGAAATGGATAACTTATGACGAGACATACTAATGGCAAGGCTATGGGTTTGGGTTCTTTGACATAAGATTTGAGTATTAGGTTTCCAGCTACAATGCCAAACTATTTCATGTTTTTTTTTTCCTATTCTCGAGGGTGGTATGTGCTCTGTTTCACAGTAATTTTTAAATGGATATTGGAAACTATTT
GCTTAAGTTTGTGAATCCTTATTCTTTTGGTGAGGTGTCATACGAAAACGAATTAACATTCATGCCAAA

>TRINITY_DN41177_c1_g1_i5 from sample A6 / Example unspliced isoform:

GCTGTCCTTGCATAACCCATCCTAACGGTATGGGAAAAAATAAAAAATATGATAATTATTTCAGCCCTGCAAGTTGCTTATTGATTGCCAACCATTTTAAACTATTACTTCTCTGGCCTTAAATATGATAGGATATTTGTTTGCAAAATATCTAAAACCCTGAACCCTCCATGGTTTCTGTTATCTCTTGTAGCATCACA
GAGCCTGCTTGCGCTTCGTTTTCTTCTTCTTCCAACCCAGCGGCCGCCATGCCTCTCGTTCTCTCTCGCACCATCCGCCTGCGTCCGGTTATCGCATTCTCGTTCACTGTGAGAAGGTTCTCGGCACAATCACCGCACCATATATCTTCTGCCTACGTCGGCTTATCCTGTAGGCTACTCAACAACCATCTGCTCGCCAT
CCCCCATGGAGTAGTACAGGCGCCCAAGGTTTCAGTGAACCGGGTCACTGTACGCTGCAAGGTGACCAACAATTCAGGGTATTCTCCGCTTTCGAAGTCGTCGCCGAACTGGAGCGACCGGCCACCCGTGGAGACCGCGCCCCTTTTCCCTGGCTGCGACTATGAGCATTGGCTCATTGTCATGGACCCTCCCGACGAAG
GCAAGGGCCCCAAGGAGGAAATGATTGACTGCTATATCAAAACCCTCGCTAAGGTTTTGGGAAGCGAGGACGCAGCAACGAAATCCATCTACAATGTGTCCTGCGAACGATACTATGGATTCGGATGCCAGATCGACGAGGATACCTCCAATAAACTCGTGGGGCTTCCTGGAGTAGTATTTGTTCTGCCAGATTCATAT
GTGGATGCGGAATATAAGGATTATGGAGGGGAACTATTTGTCGATGGGAAGACAGTTGAGAGGTCTGCAGAAAGACAGCGGCGTGTCACTCCTGCTCCTCAGCGGAACAACGGTGGCAGACCCAGATACAATGAAAGAACAAGATCTGCCAGGCAAAGAGAAATTCAGAGTCAAGGTCGTTGAGCAGCATTGCTTCTCTT
GAAATAAGAGAATATAGATAAATGATAGTGCTTCAATGTTGGTGCATTTTCAATGGACTATATCACTCCGATTGTGATATGATGTTGgtgcattttcaatggactatatcattatatgatgttgatatcattacaattttttttgctcacaaatgttataaggatatatgatatctgcaatgagttatagatgtttttgt
attagctgtgctggaaattttgtgtttttatgtttcctgagtttatttatcatttatgcagGTCGTTGAGCAGCATTGCTTCCCTTGAAATAAGAGATTATAGATAAATGATGGTCGTTGAGCAGCATTGCTTCTCTTGAAATAAGAGAATATAGATAAATGATAGTACTTCAATGTTGGTGCATTTTCAATGGACTATA
TCTCTCCAATTATGATATGATGGTGCTTCAAAGTGATTATCGTTGGAACATCTTTTGATTGGTTGTTTGCTGGACACCTTCATAGTAGGGGGAGCTCGAAGTGTGGGCGAAGTTTTGTTTTTATGAAGAGCAAGTTAGCAGAGTCATGTAAAGCTAGCATTTCCAATGCTTTGTTATATGGACTTCATGAAATGGATAAC
TTATGACGAGACATACTAATGGCAAGGCTATGGGTTTGGGTTCTTTGACATAAGATTTGAGTATTAGGTTTCCAGCTACAATGCCAAACTATTTCATGTTTTTTTTTTCCTATTCTCGAGGGTGGTATGTGCTCTGTTTCACAGTAATTTTTAAATGGATATTGGAAACTATTTGCTTAAGTTTGTGAATCCTTATTCTT
TTGGTGAGGTGTCATACGAAAACGAATTAACATTCATGCCAAA

Intron 2 GCATTTTCAA ... GGTCGTTGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	1	1	1
A2	63.64	2	3	4
A3	100	0	1	2
A4	44	7	7	4
A5	60	1	0	3
A6	45.24	23	27	11
A7	50	10	6	14
A8	35.71	18	5	15
A9	39.53	13	10	7
A10	50	3	3	3

>TRINITY_DN43870_c2_g1_i9 from sample A8 / Example spliced isoform

ATTTTAAACTATTACTTCTCTGGCCTTAAATATGATAGGATATTTGTTTGCAAAATATCTAAAACCCTGAACCCTCCATGGTTTCTGTTATCTCTTGTAGCATCACAGAGCCTGCTTGCGCTTCGTTTTCTTCTTCTTCCAACCCAGCGGCCGCCATGCCTCTCGTTCTCTCTCGCACCATCCGCCTGCGTCCGGTTATC
GCATTCTCGTTCTCTGTGAGAAGGTTCTCGGCACAATCACCGCACCATATATCTTCTGCCTACGTCGGCTTATCCTGTAGGCTACTCAACAACCATCTGCTCGCCATCCCCCATGGAGTAGTACAGGCGCCCAAGGTTTCAGTGAACCGGGTCACTGTACGCTGCAAGGTGACCAACAATTCAGGGTATTCTCCGCTTTC
GAAGTCGTCGCCGAACTGGAGCGACCGGCCACCCGTGGAGACCGCGCCCCTTTTCCCTGGCTGCGACTATGAGCATTGGCTCATTGTCATGGACCCTCCCGACGAAGGCAAGGGCCCCAAGGAGGAAATGATTGACTGCTATATCAAAACCCTCGCTAAGGTTTTGGGAAGCGAGGACGCAGCAACGAAATCCATCTACA
ATGTGTCCTGCGAACGATACTATGGATTCGGATGCCAGATCGACGAGGATACCTCCAATAAACTCGTGGGGCTTCCTGGAGTAGTATTTGTTCTGCCAGATTCATATGTGGATGCGGAATATAAGGATTATGGAGGGGAACTATTTGTCGATGGGAAGACAGTTGAGAGGTCTGCAGAAAGACAGCGGCGTGTCACTCCT
GCTCCTCAGCGGAACAACGGTGGCAGACCCAGATACAATGAAAGAACAAGATCTGCCAGGCAAAGAGAAATTCAGAGTCAAGGTCGTTGAGCAGCATTGCTTCTCTTGAAATAAGAGAATATAGATAAATGATAGTGCTTCAATGTTGGTGCATTTTCAATGGACTATATCACTCCGATTGTGATATGATGTTGGTCTTG
AAATAAGAGAATATAGATAAATGATAGTACTTCAATGTTGGTGCATTTTCAATGGACTATATCTCTCCAATTATGATATGATGGTGCTTCAAAGTGATTATCGTTGGAACATCTTTTGATTGGTTGTTTGCTGGACACCTTCATAGTAGGGGGAGCTCGAAGTGTGGGCGAAGTTTTGTTTTTATGAAGAGCAAGTTAGC
AGAGTCATGTAAAGCTAGCATTTCCAATGCTTTGTTATATGGACTTCATGAAATGGATAACTTATGACGAGACATACTAATGGCAAGGCTATGGGTTTGGGTTCTTTGACATAAGATTTGAGTATTAGGTTTCCAGCTACAATGCCAAACTATTTCATGTTTTTTTTTTCCTATTCTCGAGGGTGGTATGTGCTCTGTTT
CACAGTAATTTTTAAATGGATATTGGAAACTATTTGCTTAAGTTTGTGAATCCTTATTCTTTTGGTGAGGTGTCATACGAAAACGAATCAACATTCATGCCACTTTAATTTTTACATGATTGACAGTAATGTAGGAATGGCAAAAGATCAGA

>TRINITY_DN43870_c2_g1_i1 from sample A8 / Example unspliced isoform:

ATTTTAAACTATTACTTCTCTGGCCTTAAATATGATAGGATATTTGTTTGCAAAATATCTAAAACCCTGAACCCTCCATGGTTTCTGTTATCTCTTGTAGCATCACAGAGCCTGCTTGCGCTTCGTTTTCTTCTTCTTCCAACCCAGCGGCCGCCATGCCTCTCGTTCTCTCTCGCACCATCCGCCTGCGTCCGGTTATC
GCATTCTCGTTCTCTGTGAGAAGGTTCTCGGCACAATCACCGCACCATATATCTTCTGCCTACGTCGGCTTATCCTGTAGGCTACTCAACAACCATCTGCTCGCCATCCCCCATGGAGTAGTACAGGCGCCCAAGGTTTCAGTGAACCGGGTCACTGTACGCTGCAAGGTGACCAACAATTCAGGGTATTCTCCGCTTTC
GAAGTCGTCGCCGAACTGGAGCGACCGGCCACCCGTGGAGACCGCGCCCCTTTTCCCTGGCTGCGACTATGAGCATTGGCTCATTGTCATGGACCCTCCCGACGAAGGCAAGGGCCCCAAGGAGGAAATGATTGACTGCTATATCAAAACCCTCGCTAAGGTTTTGGGAAGCGAGGACGCAGCAACGAAATCCATCTACA
ATGTGTCCTGCGAACGATACTATGGATTCGGATGCCAGATCGACGAGGATACCTCCAATAAACTCGTGGGGCTTCCTGGAGTAGTATTTGTTCTGCCAGATTCATATGTGGATGCGGAATATAAGGATTATGGAGGGGAACTATTTGTCGATGGGAAGACAGTTGAGAGGTCTGCAGAAAGACAGCGGCGTGTCACTCCT
GCTCCTCAGCGGAACAACGGTGGCAGACCCAGATACAATGAAAGAACAAGATCTGCCAGGCAAAGAGAAATTCAGAGTCAAGGTCGTTGAGCAGCATTGCTTCTCTTGAAATAAGAGAATATAGATAAATGATAGTGCTTCAATGTTGGTGCATTTTCAATGGACTATATCACTCCGATTGTGATATGATGTTGGTgcat
tttcaatggactatatcattatatgatgttgatatcattacaattttttttgctcacaaatgttataaggatatatgatatctgcaatgagttatagatgtttttgtattagctgtgctggaaattttgtgtttttatgtttcctgagtttatttatcatttatgcaggtcgttgagcagcattgcttcccttgaaataa
gagattatagataaatgatggtacttcaatgtcggtacactttcagtagactatatcactccaagtctgatatgatgttgcttcaaagtgattattttttaactgactatatcactatatctctccaattctgatatatgatgttgcttcaaagtgattatcattacaatttttttccctcactaatgttgggataagga
tatatgttacttcaacttgcagtcagacttgcatgtttttgtattagctgtgttggaaatttgtgattttatgtttactgagtttatttatatcatttatgcaggtcgttgagCTTGAAATAAGAGAATATAGATAAATGATAGTACTTCAATGTTGGTGCATTTTCAATGGACTATATCTCTCCAATTATGATATGATG
GTGCTTCAAAGTGATTATCGTTGGAACATCTTTTGATTGGTTGTTTGCTGGACACCTTCATAGTAGGGGGAGCTCGAAGTGTGGGCGAAGTTTTGTTTTTATGAAGAGCAAGTTAGCAGAGTCATGTAAAGCTAGCATTTCCAATGCTTTGTTATATGGACTTCATGAAATGGATAACTTATGACGAGACATACTAATGG
CAAGGCTATGGGTTTGGGTTCTTTGACATAAGATTTGAGTATTAGGTTTCCAGCTACAATGCCAAACTATTTCATGTTTTTTTTTTCCTATTCTCGAGGGTGGTATGTGCTCTGTTTCACAGTAATTTTTAAATGGATATTGGAAACTATTTGCTTAAGTTTGTGAATCCTTATTCTTTTGGTGAGGTGTCATACGAAAA
CGAATCAACATTCATGCCACTTTAATTTTTACATGATTGACAGTAATGTAGGAATGGCAAAAGATCAGA