sp|Q9SU24|ORC1B_ARATH ----> Origin of replication complex subunit 1B
Intron 1 GTTATGCTTT ... TGAAAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.75 | 8 | 39 | 24 |
| A2 | 82.22 | 4 | 12 | 25 |
| A3 | 72.92 | 13 | 45 | 25 |
| A4 | 68.63 | 16 | 35 | 35 |
| A5 | 79.49 | 4 | 17 | 14 |
| A6 | 72.84 | 22 | 53 | 65 |
| A7 | 70.53 | 28 | 67 | 67 |
| A8 | 61.16 | 47 | 68 | 80 |
| A9 | 66.46 | 27 | 59 | 48 |
| A10 | 62.5 | 18 | 35 | 25 |
>TRINITY_DN42330_c2_g3_i4 from sample A8 / Example spliced isoformTTGGGCGGAGGGAACTTTTTCGCGCCATTTTCTTTAAATCTAAAGACAGCTACAAACAACTCGACATTTTTTGATCTCAGAGCCTGCTGCGGCCATTTCGCAGTGTGGCTCCTTAAACCCTCCCTGGGGTTTTATCTTTCTCTCCAGCCATATCTATAGCCATGGCACAAGCAAGCAAATGCGATCTGCAAACCCCACTG
CAAGACAAAAAAAATAACAAGCACACTGGATTTAAGTCATCATCCGCTAAGAAATCCTCTACCAGGCCTCCCCGCACGCCCGAGGTCACTCAGGCATCTCGTCACGTATCTAAACGCCTCACATTTACACAAGAAGGAGGAGAAGGAGAAGAGACCGTCTTCACGCCAGCAAAGCATTCAACTCGAAAGCGGCTCAGGAG
CCATGAAAATGACGAAAATAACCACCTCGCAGAGCCTCGAAAAAAACCCAATAAAGGCCTTGAAATCGCCAATGGCAGCGAGTCCGTCAGAAGATCCTCTCGCCTGCAGAAGGCCGAAGAAGAAGAAGAAGAAGAAGTCCAGGCTCCTCCTTCGCCCCCTCGGACAGAACCCAAGAGGAGATCTTTAAGCTCGAAAAAAT
CTGCAAGAAAACAGCCCCAGTCCTGCACTAAAACCCTCGGCAAAAATCCTACATCAAAGCCCAGTACGAAGCCTCGGAAACACAAGTGCGTTGCTCAGCAGAGTCGAGCGCCTGCCCAGAAGATCAATGGCAAGAAGAAACAGAAGAAGCCGAAGTTTTTCACCAAGGTGGTATTTGACGAGGTTGAGTTTAGGGTTGGG
GATTGCGTTTATGTGAGGCGAGTGGAATCGAGCTCCGATTCTGATGATACGGAGTTCGACGAGTGCCATATCTGTGGGAAGACTGGAAAGGCGGTTATGGTGGAGTGTGACGAGTGCTTGGGAGGGTTTCATTTATCATGCTTGAAGCCTCCATTGAAGTCGGTTCCTAAGGACAAGTGGGTGTGCTTGTTCTGTGACGG
AGATAAAGAAGGGGAGAAAGTCCAAAGGCCTCAGCGCAGGCAGAGGAAGAAGGTGCGGAAAACTGCAAGAGAAAGGCTTCTTTCATCTGACATGTGGGCTGCTCGGATAGAGAGGTTGTGGAAAGAGCCAGATGGGTCTTACTGGTTTACAGGACGCTGGTTTGTTATTCCTGAAGAGACATCTATTGGAAGACAACCCC
ATAATCTGAAAAGGGAGCTCTTTCAGACCAATCATGCTGATGCCAATCAGATGGAGTCCATCCTGAGACATTGCTATGTTAAAGGTCCTCAAGAATTTGAGAAAGCTACTGAGGGAGATGATGTATTTTTCTGTGAGTATGAGTATGATATTCATTGGCACACTTTCAAGCGCCTGGCAGATGTGGATGCCGAGAAAGAG
AGTGATAGTACATCAGTTAGTGAGAATGATTGGGATTCTAATGAGGATTCTGAGGATGATGTCGAAGATGAAGAGTGTGATCAGAAGCATGTAAATGGCAGATCAACAGCCAAGACTCCATCTAGCCATAAAGCTCCTCTTTCTGCAAAGGCTGTGAATGTATACAGGGGGCGTATTGTTGGACTGGAAAAAGTGGGTGC
AAAAAGAATTCCAGATGTGAGACGTCGCAGGCAGACTGATATTGACAAAGCAAAAACAACTCTTATGTTAGCTTCCTCTCCTGGTTCATTGCCTTGCAGAAACAAAGAAATAGACGAGATAACTGGATTTGTCACAGGAGCACTAGCTGCAGGAAACCAATGTCTGGGTAGATGTCTTTATATACATGGTGTGCCAGGGA
CTGGAAAGACTGCAACTGTTCTTACGGTCATGAAGAATCTCCAGGCTAAAGTTGATGCTGAAACTTGCCCAGCCAGAGAATCTCTACAAGGTCCTTTATGAGGCATTGACTGGACATCGGTTAGGCTGGAAAAAAGCCCTACATTTATTAAATCAGCGCTTTTCAGAATCAAAACACTCAAGCAAAGATAATCAGCCTTG
TGTTCTACTTGTAGATGAACTTGACCTCCTTGTCACTCGAAATCAGTCGGTTCTATACAACATATTTGATTGGCCCACCAGAGCTTGGTCACGGTTGGTAGTCATAGGTATAGCAAATACAATGGACCTACCAGAGAAGTTGCTTCCACGTATAGCAAGTCGCATGGGAATGCAAAGGCTATTGAGTTTGCATCCCGCAA
GGTTGCAGCAGTGTCCGGGGATGCACGTCGAGCATTGGAGCTATGTAGACGTGCTGCAGAACTTGCAGAGTTCAGACTAAAACAGACTACCTCTGTCGGAAATGCCACAAATGGATCTAATTCCAACAAAGGTACAGTTAAAAGTTTGGTAGGTATGGCAGATGTTGAAGCTGCGATACATGAAATGTTCCAAGCTCCTC
ACATCCAGATGATGAGGAGATGCTCAAGACTGGCCAAAATTTTTCTGGTAGCAATGGTTCATGAACAATACAAAACAGGGATGTCAGAAACATCATTTGAAAAGCTTGCAATATCTATTTCCTCCCTTTGCAGAAGCAATGGAGAGCAGTGCCCCGATTGGGACACAATTTTTTCCGTTGGTTGTAGGCTTGGTGCGTGT
CGGATACTCCTTTGTGAACCAGGCTTCAGGCATCGTTTGCAAAAATTACAACTCAACTTTCCAAGTGACGATGTATCTTTTGCCTTGAAGGAGGACAAGGATCTTCCATGGGTATCGAAGTATTTGTGAAAAAATTCACTTTCATATACCAATCTTTACTAGTTCAATTTTAATGCCTGTCCTATTGTGCCAGGGCATTC
AAAGGTTGTACCTTTCTATCATTTCTTACTCAATTTCAACTCATTATTTATTGTTTAATTTATGTCTCAAATAATAACTTAAATGGTTTGATATCATTTTTAATAAACATGGAGAAGACATGCATTTCTTAGATATATTGTTGGCTTACCTCTAGTATAGATTTGTTCTATTATCCTTGTGAATAAAATATGGTCTGTCA
CACCTTTATTTATCCTCGTTGAAAGATCCCTTAAAATATTTTAGCACCATCTGTATCCTATGGAGTTGAAATTTCATTAGCAGCAAAAAGTCTTACAAAATTAGCGTTAACTTGTAAAATTAGTGAGTTGGTTCACTTAAAGTTGTTATACAAGATTGAAG
>TRINITY_DN42330_c2_g3_i1 from sample A8 / Example unspliced isoform:TTGGGCGGAGGGAACTTTTTCGCGCCATTTTCTTTAAATCTAAAGACAGCTACAAACAACTCGACATTTTTTGATCTCAGAGCCTGCTGCGGCCATTTCGCAGTGTGGCTCCTTAAACCCTCCCTGGGGTTTTATCTTTCTCTCCAGCCATATCTATAGCCATGGCACAAGCAAGCAAATGCGATCTGCAAACCCCACTG
CAAGACAAAAAAAATAACAAGCACACTGGATTTAAGTCATCATCCGCTAAGAAATCCTCTACCAGGCCTCCCCGCACGCCCGAGGTCACTCAGGCATCTCGTCACGTATCTAAACGCCTCACATTTACACAAGAAGGAGGAGAAGGAGAAGAGACCGTCTTCACGCCAGCAAAGCATTCAACTCGAAAGCGGCTCAGGAG
CCATGAAAATGACGAAAATAACCACCTCGCAGAGCCTCGAAAAAAACCCAATAAAGGCCTTGAAATCGCCAATGGCAGCGAGTCCGTCAGAAGATCCTCTCGCCTGCAGAAGGCCGAAGAAGAAGAAGAAGAAGAAGTCCAGGCTCCTCCTTCGCCCCCTCGGACAGAACCCAAGAGGAGATCTTTAAGCTCGAAAAAAT
CTGCAAGAAAACAGCCCCAGTCCTGCACTAAAACCCTCGGCAAAAATCCTACATCAAAGCCCAGTACGAAGCCTCGGAAACACAAGTGCGTTGCTCAGCAGAGTCGAGCGCCTGCCCAGAAGATCAATGGCAAGAAGAAACAGAAGAAGCCGAAGTTTTTCACCAAGGTGGTATTTGACGAGGTTGAGTTTAGGGTTGGG
GATTGCGTTTATGTGAGGCGAGTGGAATCGAGCTCCGATTCTGATGATACGGAGTTCGACGAGTGCCATATCTGTGGGAAGACTGGAAAGGCGGTTATGGTGGAGTGTGACGAGTGCTTGGGAGGGTTTCATTTATCATGCTTGAAGCCTCCATTGAAGTCGGTTCCTAAGGACAAGTGGGTGTGCTTGTTCTGTGACGG
AGATAAAGAAGGGGAGAAAGTCCAAAGGCCTCAGCGCAGGCAGAGGAAGAAGGTGCGGAAAACTGCAAGAGAAAGGCTTCTTTCATCTGACATGTGGGCTGCTCGGATAGAGAGGTTGTGGAAAGAGCCAGATGGGTCTTACTGGTTTACAGGACGCTGGTTTGTTATTCCTGAAGAGACATCTATTGGAAGACAACCCC
ATAATCTGAAAAGGGAGCTCTTTCAGACCAATCATGCTGATGCCAATCAGATGGAGTCCATCCTGAGACATTGCTATGTTAAAGGTCCTCAAGAATTTGAGAAAGCTACTGAGGGAGATGATGTATTTTTCTGTGAGTATGAGTATGATATTCATTGGCACACTTTCAAGCGCCTGGCAGATGTGGATGCCGAGAAAGAG
AGTGATAGTACATCAGTTAGTGAGAATGATTGGGATTCTAATGAGGATTCTGAGGATGATGTCGAAGATGAAGAGTGTGATCAGAAGCATGTAAATGGCAGATCAACAGCCAAGACTCCATCTAGCCATAAAGCTCCTCTTTCTGCAAAGGCTGTGAATGTATACAGGGGGCGTATTGTTGGACTGGAAAAAGTGGGTGC
AAAAAGAATTCCAGATGTGAGACGTCGCAGGCAGACTGATATTGACAAAGCAAAAACAACTCTTATGTTAGCTTCCTCTCCTGGTTCATTGCCTTGCAGAAACAAAGAAATAGACGAGATAACTGGATTTGTCACAGGAGCACTAGCTGCAGGAAACCAATGTCTGGGTAGATGTCTTTATATACATGGTGTGCCAGGGA
CTGGAAAGACTGCAACTGTTCTTACGGTCATGAAGAATCTCCAGGCTAAAGTTGATGCTGGAATTGTTCAGCCCTATCGATTTGTGGAGATCAATGGGCTGAAACTTGCCCAGCCAGAGAATCTCTACAAGGTCCTTTATGAGGCATTGACTGGACATCGGTTAGGCTGGAAAAAAGCCCTACATTTATTAAATCAGCGC
TTTTCAGAATCAAAACACTCAAGCAAAGATAATCAGCCTTGTGTTCTACTTGTAGATGAACTTGACCTCCTTGTCACTCGAAATCAGTCGGTTCTATACAACATATTTGATTGGCCCACCAGAGCTTGGTCACGGTTGGTAGTCATAGGTATAGCAAATACAATGGACCTACCAGAGAAGTTGCTTCCACGTATAGCAAG
TCGCATGGGAATGCAAAGgttatgctttggcccctattctcaccagcagctgcaagaaatcatttctagtcgtcttaatggaatcgatgtatttgaaaaacagGCTATTGAGTTTGCATCCCGCAAGGTTGCAGCAGTGTCCGGGGATGCACGTCGAGCATTGGAGCTATGTAGACGTGCTGCAGAACTTGCAGAGTTCA
GACTAAAACAGACTACCTCTGTCGGAAATGCCACAAATGGATCTAATTCCAACAAAGGTACAGTTAAAAGTTTGGTAGGTATGGCAGATGTTGAAGCTGCGATACATGAAATGTTCCAAGCTCCTCACATCCAGATGATGAGGAGATGCTCAAGACTGGCCAAAATTTTTCTGGTAGCAATGGTTCATGAACAATACAAA
ACAGGGATGTCAGAAACATCATTTGAAAAGCTTGCAATATCTATTTCCTCCCTTTGCAGAAGCAATGGAGAGCAGTGCCCCGATTGGGACACAATTTTTTCCGTTGGTTGTAGGCTTGGTGCGTGTCGGATACTCCTTTGTGAACCAGGCTTCAGGCATCGTTTGCAAAAATTACAACTCAACTTTCCAAGTGACGATGT
ATCTTTTGCCTTGAAGGAGGACAAGGATCTTCCATGGGTATCGAAGTATTTGTGAAAAAATTCACTTTCATATACCAATCTTTACTAGTTCAATTTTAATGCCTGTCCTATTGTGCCAGGGCATTCAAAGGTTGTACCTTTCTATCATTTCTTACTCAATTTCAACTCATTATTTATTGTTTAATTTATGTCTCAAATAA
TAACTTAAATGGTTTGATATCATTTTTAATAAACATGGAGAAGACATGCATTTCTTAGATATATTGTTGGCTTACCTCTAGTATAGATTTGTTCTATTATCCTTGTGAATAAAATATGGTCTGTCACACCTTTATTTATCCTCGTTGAAAGATCCCTTAAAATATTTTAGCACCATCTGTATCCTATGGAGTTGAAATTT
CATTAGCAGCAAAAAGTCTTACAAAATTAGCGTTAACTTGTAAAATTAGTGAGTTGGTTCACTTAAAGTTGTTATACAAGATTGAAG
Intron 2 GTTAGTTGAT ... GACTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.9 | 30 | 0 | 11 |
| A2 | 25.57 | 8.8 | 0 | 3 |
| A3 | 14.73 | 29 | 1 | 5 |
| A4 | 0 | 5 | 0 | 0 |
| A5 | 13.05 | 13.8 | 0 | 2 |
| A6 | 19.09 | 106.3 | 0 | 25 |
| A7 | 11.08 | 114 | 0 | 14 |
| A8 | 10.88 | 166 | 0 | 20 |
| A9 | 14.17 | 116.5 | 1 | 19 |
| A10 | 9.86 | 64.8 | 0 | 7 |
>TRINITY_DN39872_c0_g2_i5 from sample A9 / Example spliced isoformTTTAAATTCAACTAATTGTTTGACCGTACACCTCATTCGGGAAAATTGGGCGGAGGGAACTTTTTCGCGCCATTTTCTTTAAATCTAAAGACAGCTACAAACAACTCGACATTTTTTGATCTCAGAGCCTGCTGCGGCCATTTCGCAGTGTGGCTCCTTAAACCCTCCCTGGGGTTTTATCTTTCTCTCCAGCTATATCT
ATAGCCATGGCACAAGCAAGCAAATGCGATCTGCAAACCCCACTGCAAGACAAAAAAAATAACAAGCACACTGGATTTAAGTCATCATCCGCTAAGAAATCCTCTACCAGGCCTCCCCGCACGCCCGAGGTCACTCAGGCATCTCGTCACGTATCTAAACGCCTCACATTTACACAAGAAGGAGGAGAAGGAGAAGAGAC
CGTCTTCACGCCAGCAAAGCATTCAACTCGAAAGCGGCTCAGGAGCCATGAAAATGACGAAAATAACCACCTCGCAGAGCCTCGAAAAAAACCCAATAAAGGCCTTGAAATCGCCAATGGCAGCGAGTCCGTCAGAAGATCCTCTCGCCTGCAGAAGGCCGAAGAAGAAGAAGAAGAAGTCCAGGCTCCTCCTTCGCCCC
CTCGGACAGAACCCAAGAGGAGATCTTTAAGCTCGAAAAAATCTGCAAGAAAACAGCCCCAGTCCTGCACTAAAACCCTCGGCAAAAATCCTACATCAAAGCCCAGTACGAAGCCTCGGAAACACAAGTGCGTTGCTCAGCAGAGTCGAGCGCCTGCCCAGAAGATCAATGGCAAGAAGAAACAGAAGAAGCCGAAGTTT
TTCACCAAGGTGGTATTTGACGAGGTTGAGTTTAGGGTTGGGGATTGCGTTTATGTGAGGCGAGTGGAATCGAGCTCCGATTCTGATGACACGGAGTTCGACGAGTGCCATATCTGTGGGAAGACTGGAAAGGCGGTTATGGTGGAGTGTGACGAGTGCTTGGGAGGGTTTCATTTATCATGCTTGAAGCCTCCATTGAA
GTCGGTTCCTAAGGACAAGTGGGTGTGCTTGTTCTGTGACGGAGATAAAGAAGGGGAGAAAGTCCAAAGGCCTCAGCGCAGGCAGAGGAAGAAGGTGCGGAAAACTGCAAGAGAAAGGCTTCTTTCATCTGACATGTGGGCTGCTCGGATAGAGAGGTTGTGGAAAGAGCCAGATGGGTCTTACTGGTTTACAGGACGCT
GGTTTGTTATTCCTGAAGAGACATCTATTGGAAGACAACCCCATAATCTGAAAAGGGAGCTCTTTCAGACCAATCATGCTGATGCCAATCAGATGGAGTCCATCCTGAGACATTGCTATGTTAAAGGTCCTCAAGAATTTGAGAAAGCTACTGAGGGAGATGATGTATTTTTCTGTGAGTATGAGTATGATATTCATTGG
CACACTTTCAAGCGCCTGGCAGATGTGGATGCCGAGAAAGAGAGTGATAGTACATCAGTTAGTGAGAATGATTGGGATTCTAATGAGGATTCTGAGGATGATGTCGAAGATGAAGAGTGTGATCAGAAGCATGTAAATGGCAGATCAACAGCCAAGACTCCATCTAGCCATAAAGCTCCTCTTTCTGCAAAGGCTGTGAA
TGTATACAGGGGGCGTATTGTTGGACTGGAAAAAGTGGGTGCAAAAAGAATTCCAGATGTGAGACGTCGCAGGCAGACTGATATTGACAAAGCAAAAACAACTCTTATGTTAGCTTCCTCTCCTGGTTCATTGCCTTGCAGAAACAAAGAAATAGACGAGATAACTGGATTTGTCACAGGAGCACTAGCTGCAGGAAACC
AATGTCTGGGTAGATGTCTTTATATACATGGTGTGCCAGGGACTGGAAAGATCATATCAGTAGCCATGCTGATAGATATGGACCATGATGTTCAGACTGCAACTGTTCTTACGGTCATGAAGAATCTCCAGGCTAAAGTTGATGCTGGAATTGTTCAGCCCTATCGATTTGTGGAGATCAATGGGCTGAAACTTGCCCAG
CCAGAGAATCTCTACAAGGTCCTTTATGAGGCATTGACTGGACATCGGTTAGGCTGGAAAAAAGCCCTACATTTATTAAATCAGCGCTTTTCAGAATCAAAACACTCAAGCAAAGATAATCAGCCTTGTGTTCTACTTGTAGATGAACTTGACCTCCTTGTCACTCGAAATCAGTCGGTTCTATACAACATATTTGATTG
GCCCACCAGAGCTTGGTCACGGTTGGTAGTCATAGGTATAGCAAATACAATGGACCTACCAGAGAAGTTGCTTCCACGTATAGCAAGTCGCATGGGAATGCAAAGGTTATGCTTTGGCCCCTATTCTCACCAGCAGCTGCAAGAAATCATTTCTAGTCGTCTTAATGGAATCGATGTATTTGAAAAACAGGCTATTGAGT
TTGCATCCCGCAAGGTTGCAGCAGTGTCCGGGGATGCACGTCGAGCATTGGAGCTATGTAGACGTGCTGCAGAACTTGCAGAGTTCAGACTAAAACAGACTACCTCTGTCGGAAATGCCACAAATGGATCTAATTCCAACAAAGGTACAGTTAAAAGTTTGGTAGGTATGGCAGATGTTGAAGCTGCGATACATGAAATG
TTCCAAGCTCCTCACATCCAGATGATGAGGAGATGCTCAAGACTGGCCAAAATTTTTCTGGTAGCAATGGTTCATGAACAATACAAAACAGGGATGTCAGAAACATCATTTGAAAAGCTTGCAATATCTATTTCCTCCCTTTGCAGAAGCAATGGAGAGCAGTGCCCCGATTGGGACACAATTTTTTCCGTTGGTTGTAG
GCTTGGTGCGTGTCGGATACTCCTTTGTGAACCAGGCTTCAGGCATCGTTTGCAAAAATTACAACTCAACTTTCCAAGTGACGATGTATCTTTTGCCTTGAAGGAGGACAAGGATCTTCCATGGGTATCGAAGTATTTGTGAAAAAATTCACTTTCATATACCAATCTTTACTAGTTCAATTTTAATGCCTGTCCTATTG
TGCCAGGGCATTCAAAGGTTGTACCTTTCTATCATTTCTTACTCAATTTCAACTCATTATTTATTGTTTAATTTATGTCTCAAATAATAACTTAAATGGTTTGATATCATTTTTAATAAACATGGAGAAGACATGCATTTCTTAGATATATTGTTGGCTTACCTCTAGTATAGATTTGTTCTATTATCCTTGTGAATAAA
ATATGGTCTGTCACACCTTTATTTATCCTCGTTGAAAGATCCCTTAAAATATTTTAGCACCATCTGTATCCTATGGAGTTGAAATTTCATTAGCAGCAAAAAGTCTTACAAAATTAGCGTTAACTTGTAAAATTAGTGAGTTGGTTCACTTAAAGTTGTTATACAAGATTGAAGAGTATCTATCAATTAATAAAAAAT
>TRINITY_DN39872_c0_g2_i3 from sample A9 / Example unspliced isoform:TGGGACACAATTTTTTCCGTTGGgttagttgatcttgcagttttgttcatcttttttaacatcagtcttgctagataaatataactgaatatctagaaggttgttaacaattaaccctcattttgcatgaaattagattgtatctgtacaacattccactatgttgaacatcgctatttctatctaaaaaattgtccttg
acttggcagTTGTAGGCTTGGTGCGTGTCGGATACTCCTTTGTGAACCAGGCTTCAGGCATCGTTTGCAAAAATTACAACTCAACTTTCCAAGTGACGATGTATCTTTTGCCTTGAAGGAGGACAAGGATCTTCCATGGGTATCGAAGTATTTGTGAAAAAATTCACTTTCATATACCAATCTTTACTAGTTCAATTTTA
ATGCCTGTCCTATTGTGCCAGGGCATTCAAAGGTTGTACCTTTCTATCATTTCTTACTCAATTTCAACTCATTATTTATTGTTTAATTTATGTCTCAAATAATAACTTAAATGGTTTGATATCATTTTTAATAAACATGGAGAAGACATGCATTTCTTAGATATATTGTTGGCTTACCTCTAGTATAGATTTGTTCTATT
ATCCTTGTGAATAAAATATGGTCTGTCACACCTTTATTTATCCTCGTTGAAAGATCCCTTAAAATATTTTAGCACCATCTGTATCCTATGGAGTTGAAATTTCATTAGCAGCAAAAAGTCTTACAAAATTAGCGTTAACTTGTAAAATTAGTGAGTTGGTTCACTTAAAGTTGTTATACAAGATTGAAGAGTATCTATCA
ATTAATAAAAAAT
Intron 3 GTAAGGGCTT ... CTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.47 | 54 | 31 | 8.4 |
| A2 | 29.31 | 41 | 17 | 1.8 |
| A3 | 34.97 | 47.6 | 25.6 | 8.2 |
| A4 | 31.11 | 31 | 14 | 3.6 |
| A5 | 21.05 | 15 | 4 | 3.6 |
| A6 | 16.67 | 10 | 2 | 0.6 |
| A7 | 28.36 | 48 | 19 | 6.6 |
| A8 | 25 | 18 | 6 | 2.4 |
| A9 | 23.08 | 60 | 18 | 9 |
| A10 | 19.23 | 42 | 10 | 3.6 |
>TRINITY_DN116971_c0_g1_i2 from sample A1 / Example spliced isoformCCTCATTCGGGAAAATTGGGCGGAGGGAACTTTTTCGCGCCATTTTCTTTAAATCTAAAGACAGCTACAAACAACTCGACATTTTTTGATCTCAGAGCCTGCTGCGGCCATTTCGCAGTGTGGCTCCTTAAACCCTCCCTGGGGTTTTATCTTTCTCTCCAGCCATATCTATAGCCATGGCACAAGCAAGCAAATGCGAT
CTGCAAACCCCACTGCAAGACAAAAAAAATAACAAGCACACTGGATTTAAGTCATCATCCGCTAAGAAATCCTCTACCAGGCCTCCCCGCACGCCCGAGGTCACTCAGGCATCTCGTCACGTATCTAAACGCCTCACATTTACACAAGAAGGAGGAGAAGGAGAAGAGACCGTCTTCACGCCAGCAAAGCATTCAACTCG
AAAGCGGCTCAGGAGCCATGAAAATGACGAAAATAACCACCTCGCAGAGCCTCGAAAAAAACCCAATAAAGGCCTTGAAATCGCCAATGGCAGCGAGTCCGTCAGAAGATCCTCTCGCCTGCAGAAGGCCGAAGAAGAAGAAGAAGAAGAAGTCCAGGCTCCTCCTTCGCCCCCTCGGACAGAACCCAAGAGGAGATCTT
TAAGCTCGAAAAAATCTGCAAGAAAACAGCCCCAGTCCTGCACTAAAACCCTCGGCAAAAATCCTACATCAAAGCCCAGTACGAAGCCTCGGAAACACAAGTGCGTTGCTCAGCAGAGTCGAGCGCCTGCCCAGAAGATCAATGGCAAGAAGAAACAGAAGAAGCCGAAGTTTTTCACCAAGGTGGTATTTGACGAGGTT
GAGTTTAGGGTTGGGGATTGCGTTTATGTGAGGCGAGTGGAATCGAGCTCCGATTCTGATGACACGGAGTTCGACGAGTGCCATATCTGTGGGAAGACTGGAAAGGCGGTTATGGTGGAGTGTGACGAGTGCTTGGGAGGGTTTCATTTATCATGCTTGAAGCCTCCATTGAAGTCGGTTCCTAAGGACAAGTGGGTGTG
CTTGTTCTGTGACGGAGATAAAGAAGGGGAGAAAGTCCAAAGGCCTCAGCGCAGGCAGAGGAAGAAGGTGCGGAAAACTGCAAGAGAAAGGCTTCTTTCATCTGACATGTGGGCTGCTCGGATAGAGAGGTTGTGGAAAGAGCCAGATGGGTCTTACTGGTTTACAGGACGCTGGTTTGTTATTCCTGAAGAGACATCTA
TTGGAAGACAACCCCATAATCTGAAAAGGGAGCTCTTTCAGACCAATCATGCTGATGCCAATCAGATGGAGTCCATCCTGAGACATTGCTATGTTAAAGGTCCTCAAGAATTTGAGAAAGCTACTGAGGGAGATGATGTATTTTTCTGTGAGTATGAGTATGATATTCATTGGCACACTTTCAAGCGCCTGGCAGATGTG
GATGCCGAGAAAGAGAGTGATAGTACATCAGTTAGTGAGAATGATTGGGATTCTAATGAGGATTCTGAGGATGATGTCGAAGATGAAGAGTGTGATCAGAAGCATGTAAATGGCAGATCAACAGCCAAGACTCCATCTAGCCATAAAGCTCCTCTTTCTGCAAAGGCTGTGAATGTATACAGGGGGCGTATTGTTGGACT
GGAAAAAGTGGGTGCAAAAAGAATTCCAGATGTGAGACGTCGCAGGCAGACTGATATTGACAAAGCAAAAACAACTCTTATGTTAGCTTCCTCTCCTGGTTCATTGCCTTGCAGAAACAAAGAAATAGACGAGATAACTGGATTTGTCACAGGAGCACTAGCTGCAGGAAACCAATGTCTGGGTAGATGTCTTTATATAC
ATGGTGTGCCAGGGACTGGAAAGACTGCAACTGTTCTTACGGTCATGAAGAATCTCCAGGCTAAAGTTGATGCTGGAATTGTTCAGCCCTATCGATTTGTGGAGATCAATGGGCTGAAACTTGCCCAGCCAGAGAATCTCTACAAGGTCCTTTATGAGGCATTGACTGGACATCGGTTAGGCTGGAAAAAAGCCCTACAT
TTATTAAATCAGCGCTTTTCAGAATCAAAACACTCAAGCAAAGATAATCAGCCTTGTGTTCTACTTGTAGATGAACTTGACCTCCTTGTCACTCGAAATCAGTCGGTTCTATACAACATATTTGATTGGCCCACCAGAGCTTGGTCACGGTTGGTAGTCATAGGTATAGCAAATACAATGGACCTACCAGAGAAGTTGCT
TCCACGTATAGCAAGTCGCATGGGAATGCAAAGGTTATGCTTTGGCCCCTATTCTCACCAGCAGCTGCAAGAAATCATTTCTAGTCGTCTTAATGGAATCGATGTATTTGAAAAACAGGCTATTGAGTTTGCATCCCGCAAGGTTGCAGCAGTGTCCGGGGATGCACGTCGAGCATTGGAGCTATGTAGACGTGCTGCAG
AACTTGCAGAGTTCAGACTAAAACAGACTACCTCTGTCGGAAATGCCACAAATGGATCTAATTCCAACAAAGGTACAGTTAAAAGTTTGGTAGGTATGGCAGATGTTGAAGCTGCGATACATGAAATGTTCCAAGCTCCTCACATCCAGATGATGAGGAGATGCTCAAGACTGGCCAAAATTTTTCTGGTAGCAATGGTT
CATGAACAATACAAAACAGGGATGTCAGAAACATCATTTGAAAAGCTTGCAATATCTATTTCCTCCCTTTGCAGAAGCAATGGAGAGCAGTGCCCCGATTGGGACACAATTTTTTCCGTTGGTTGTAGGCTTGGTGCGTGTCGGATACTCCTTTGTGAACCAGGCTTCAGGCATCGTTTGCAAAAATTACAACTCAACTT
TCCAAGTGACGATGTATCTTTTGCCTTGAAGGAGGACAAGGATCTTCCGTGGGTATCGAAGTATTTGTGAAAAAATTCACTTTCATATACCAATCTTTACTAGTTCAATTTTAATGCCTGTCCTATTGTGCCAGGGCATTCAAAGGTTGTACCTTTCTATCATTTCTTACTCAATTTCAACTCATTATTTATTGTTTAAT
TTATGTCTCAAATAATAACTTAAATGGTTTGATATCATTTTTAATAAACATGGAGAAGACATGCATTTCTTAGATATATTGTTGGCTTACCTCTA
>TRINITY_DN116971_c0_g1_i5 from sample A1 / Example unspliced isoform:CCTCATTCGGGAAAATTGGGCGGAGGGAACTTTTTCGCGCCATTTTCTTTAAATCTAAAGACAGCTACAAACAACTCGACATTTTTTGATCTCAGAGCCTGCTGCGGCCATTTCGCAGTGTGGCTCCTTAAACCCTCCCTGGGGTTTTATCTTTCTCTCCAGCCATATCTATAGCCATGGCACAAGCAAGCAAATGCGAT
CTGCAAACCCCACTGCAAGACAAAAAAAATAACAAGCACACTGGATTTAAGTCATCATCCGCTAAGAAATCCTCTACCAGGCCTCCCCGCACGCCCGAGGTCACTCAGGCATCTCGTCACGTATCTAAACGCCTCACATTTACACAAGAAGGAGGAGAAGGAGAAGAGACCGTCTTCACGCCAGCAAAGCATTCAACTCG
AAAGCGGCTCAGGAGCCATGAAAATGACGAAAATAACCACCTCGCAGAGCCTCGAAAAAAACCCAATAAAGGCCTTGAAATCGCCAATGGCAGCGAGTCCGTCAGAAGATCCTCTCGCCTGCAGAAGGCCGAAGAAGAAGAAGAAGAAGAAGTCCAGGCTCCTCCTTCGCCCCCTCGGACAGAACCCAAGAGGAGATCTT
TAAGCTCGAAAAAATCTGCAAGAAAACAGCCCCAGTCCTGCACTAAAACCCTCGGCAAAAATCCTACATCAAAGCCCAGTACGAAGCCTCGGAAACACAAGTGCGTTGCTCAGCAGAGTCGAGCGCCTGCCCAGAAGATCAATGGCAAGAAGAAACAGAAGAAGCCGAAGTTTTTCACCAAGGTGGTATTTGACGAGGTT
GAGTTTAGGGTTGGGGATTGCGTTTATGTGAGGCGAGTGGAATCGAGCTCCGATTCTGATGACACGGAGTTCGACGAGTGCCATATCTGTGGGAAGACTGGAAAGGCGGTTATGGTGGAGTGTGACGAGTGCTTGGGAGGGTTTCATTTATCATGCTTGAAGCCTCCATTGAAGTCGGTTCCTAAGGACAAGTGGGTGTG
CTTGTTCTGTGACGGAGATAAAGAAGGGGAGAAAGTCCAAAGGCCTCAGCGCAGGCAGAGGAAGAAGGTGCGGAAAACTGCAAGAGAAAGGCTTCTTTCATCTGACATGTGGGCTGCTCGGATAGAGAGgtaagggcttagattttaggggattggagttcagtgggcagcattttgtgtacagggcatgaaagtttctt
aaactttttgcagGTTGTGGAAAGAGCCAG
Intron 4 GTATGCAGAT ... TTTACTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.86 | 28 | 14 | 11 |
| A2 | 6.38 | 22 | 1 | 2 |
| A3 | 31.25 | 22 | 14 | 6 |
| A4 | 29.03 | 44 | 17 | 19 |
| A5 | 41.18 | 10 | 12 | 2 |
| A6 | 25.47 | 79 | 20 | 34 |
| A7 | 21.93 | 73 | 15 | 26 |
| A8 | 20.55 | 87 | 15 | 30 |
| A9 | 22.54 | 55 | 8 | 24 |
| A10 | 21.62 | 29 | 5 | 11 |
>TRINITY_DN116971_c0_g1_i2 from sample A1 / Example spliced isoformCCTCATTCGGGAAAATTGGGCGGAGGGAACTTTTTCGCGCCATTTTCTTTAAATCTAAAGACAGCTACAAACAACTCGACATTTTTTGATCTCAGAGCCTGCTGCGGCCATTTCGCAGTGTGGCTCCTTAAACCCTCCCTGGGGTTTTATCTTTCTCTCCAGCCATATCTATAGCCATGGCACAAGCAAGCAAATGCGAT
CTGCAAACCCCACTGCAAGACAAAAAAAATAACAAGCACACTGGATTTAAGTCATCATCCGCTAAGAAATCCTCTACCAGGCCTCCCCGCACGCCCGAGGTCACTCAGGCATCTCGTCACGTATCTAAACGCCTCACATTTACACAAGAAGGAGGAGAAGGAGAAGAGACCGTCTTCACGCCAGCAAAGCATTCAACTCG
AAAGCGGCTCAGGAGCCATGAAAATGACGAAAATAACCACCTCGCAGAGCCTCGAAAAAAACCCAATAAAGGCCTTGAAATCGCCAATGGCAGCGAGTCCGTCAGAAGATCCTCTCGCCTGCAGAAGGCCGAAGAAGAAGAAGAAGAAGAAGTCCAGGCTCCTCCTTCGCCCCCTCGGACAGAACCCAAGAGGAGATCTT
TAAGCTCGAAAAAATCTGCAAGAAAACAGCCCCAGTCCTGCACTAAAACCCTCGGCAAAAATCCTACATCAAAGCCCAGTACGAAGCCTCGGAAACACAAGTGCGTTGCTCAGCAGAGTCGAGCGCCTGCCCAGAAGATCAATGGCAAGAAGAAACAGAAGAAGCCGAAGTTTTTCACCAAGGTGGTATTTGACGAGGTT
GAGTTTAGGGTTGGGGATTGCGTTTATGTGAGGCGAGTGGAATCGAGCTCCGATTCTGATGACACGGAGTTCGACGAGTGCCATATCTGTGGGAAGACTGGAAAGGCGGTTATGGTGGAGTGTGACGAGTGCTTGGGAGGGTTTCATTTATCATGCTTGAAGCCTCCATTGAAGTCGGTTCCTAAGGACAAGTGGGTGTG
CTTGTTCTGTGACGGAGATAAAGAAGGGGAGAAAGTCCAAAGGCCTCAGCGCAGGCAGAGGAAGAAGGTGCGGAAAACTGCAAGAGAAAGGCTTCTTTCATCTGACATGTGGGCTGCTCGGATAGAGAGGTTGTGGAAAGAGCCAGATGGGTCTTACTGGTTTACAGGACGCTGGTTTGTTATTCCTGAAGAGACATCTA
TTGGAAGACAACCCCATAATCTGAAAAGGGAGCTCTTTCAGACCAATCATGCTGATGCCAATCAGATGGAGTCCATCCTGAGACATTGCTATGTTAAAGGTCCTCAAGAATTTGAGAAAGCTACTGAGGGAGATGATGTATTTTTCTGTGAGTATGAGTATGATATTCATTGGCACACTTTCAAGCGCCTGGCAGATGTG
GATGCCGAGAAAGAGAGTGATAGTACATCAGTTAGTGAGAATGATTGGGATTCTAATGAGGATTCTGAGGATGATGTCGAAGATGAAGAGTGTGATCAGAAGCATGTAAATGGCAGATCAACAGCCAAGACTCCATCTAGCCATAAAGCTCCTCTTTCTGCAAAGGCTGTGAATGTATACAGGGGGCGTATTGTTGGACT
GGAAAAAGTGGGTGCAAAAAGAATTCCAGATGTGAGACGTCGCAGGCAGACTGATATTGACAAAGCAAAAACAACTCTTATGTTAGCTTCCTCTCCTGGTTCATTGCCTTGCAGAAACAAAGAAATAGACGAGATAACTGGATTTGTCACAGGAGCACTAGCTGCAGGAAACCAATGTCTGGGTAGATGTCTTTATATAC
ATGGTGTGCCAGGGACTGGAAAGACTGCAACTGTTCTTACGGTCATGAAGAATCTCCAGGCTAAAGTTGATGCTGGAATTGTTCAGCCCTATCGATTTGTGGAGATCAATGGGCTGAAACTTGCCCAGCCAGAGAATCTCTACAAGGTCCTTTATGAGGCATTGACTGGACATCGGTTAGGCTGGAAAAAAGCCCTACAT
TTATTAAATCAGCGCTTTTCAGAATCAAAACACTCAAGCAAAGATAATCAGCCTTGTGTTCTACTTGTAGATGAACTTGACCTCCTTGTCACTCGAAATCAGTCGGTTCTATACAACATATTTGATTGGCCCACCAGAGCTTGGTCACGGTTGGTAGTCATAGGTATAGCAAATACAATGGACCTACCAGAGAAGTTGCT
TCCACGTATAGCAAGTCGCATGGGAATGCAAAGGTTATGCTTTGGCCCCTATTCTCACCAGCAGCTGCAAGAAATCATTTCTAGTCGTCTTAATGGAATCGATGTATTTGAAAAACAGGCTATTGAGTTTGCATCCCGCAAGGTTGCAGCAGTGTCCGGGGATGCACGTCGAGCATTGGAGCTATGTAGACGTGCTGCAG
AACTTGCAGAGTTCAGACTAAAACAGACTACCTCTGTCGGAAATGCCACAAATGGATCTAATTCCAACAAAGGTACAGTTAAAAGTTTGGTAGGTATGGCAGATGTTGAAGCTGCGATACATGAAATGTTCCAAGCTCCTCACATCCAGATGATGAGGAGATGCTCAAGACTGGCCAAAATTTTTCTGGTAGCAATGGTT
CATGAACAATACAAAACAGGGATGTCAGAAACATCATTTGAAAAGCTTGCAATATCTATTTCCTCCCTTTGCAGAAGCAATGGAGAGCAGTGCCCCGATTGGGACACAATTTTTTCCGTTGGTTGTAGGCTTGGTGCGTGTCGGATACTCCTTTGTGAACCAGGCTTCAGGCATCGTTTGCAAAAATTACAACTCAACTT
TCCAAGTGACGATGTATCTTTTGCCTTGAAGGAGGACAAGGATCTTCCGTGGGTATCGAAGTATTTGTGAAAAAATTCACTTTCATATACCAATCTTTACTAGTTCAATTTTAATGCCTGTCCTATTGTGCCAGGGCATTCAAAGGTTGTACCTTTCTATCATTTCTTACTCAATTTCAACTCATTATTTATTGTTTAAT
TTATGTCTCAAATAATAACTTAAATGGTTTGATATCATTTTTAATAAACATGGAGAAGACATGCATTTCTTAGATATATTGTTGGCTTACCTCTA
>TRINITY_DN116971_c0_g1_i1 from sample A1 / Example unspliced isoform:CAACTATCCATATGTGATCTATATTCCTAAGAGGAAGTGAAGCCAATTGATTATCCGATGTTTAGATTGTTCACACATCTTGCATTTGGACTTAACAGGTATAGCAAATACAATGGACCTACCAGAGAAGTTGCTTCCACGTATAGCAAGTCGCATGGGAATGCAAAGGTTATGCTTTGGCCCCTATTCTCACCAGCAGC
TGCAAGAAATCATTTCTAGTCGTCTTAATGGAATCGATGTATTTGAAAAACAGGCTATTGAGTTTGCATCCCGCAAGgtatgcagattatgaaaatcttataaagagatttgcttgttttctgcaatatcagactgatttctgtactatggaggctagaaagtgaaaaactcagcattttactacagGTTGCAGCAGTGT
CCGGGGATGCACGTCGAGCATTGGAGCTATGTAGACGTGCTGCAGAACTTGCAGAGTTCAGACTAAAACAGACTACCTCTGTCGGAAATGCCACAAATGGATCTAATTCCAACAAAGGTACAGTTAAAAGTTTGGTAGGTATGGCAGATGTTGAAGCTGCGATACATGAAATGTTCCAAGCTCCTCACATCCAGATGATG
AGGAGATGCTCAAGACTGGCCAAAATTTTTCTGGTAGCAATGGTTCATGAACAATACAAAACAGGGATGTCAGAAACATCATTTGAAAAGCTTGCAATATCTATTTCCTCCCTTTGCAGAAGCAATGGAGAGCAGTGCCCCGATTGGGACACAATTTTTTCCGTTGGTTGTAGGCTTGGTGCGTGTCGGATACTCCTTTG
TGAACCAGGCTTCAGGCATCGTTTGCAAAAATTACAACTCAACTTTCCAAGTGACGATGTATCTTTTGCCTTGAAGGAGGACAAGGATCTTCCGTGGGTATCGAAGTATTTGTGAAAAAATTCACTTTCATATACCAATCTTTACTAGTTCAATTTTAATGCCTGTCCTATTGTGCCAGGGCATTCAAAGGTTGTACCTT
TCTATCATTTCTTACTCAATTTCAACTCATTATTTATTGTTTAATTTATGTCTCAAATAATAACTTAAATGGTTTGATATCATTTTTAATAAACATGGAGAAGACATGCATTTCTTAGATATATTGTTGGCTTACCTCTA