NA ----> NA

Intron 1 GTTTTCACAG ... TTGCATTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	65.09	13	23.5	25
A2	54.1	14	21	12
A3	69.57	7	10	22
A4	60	13	16	23
A5	44.44	5	3	5
A6	33.33	1	0	1
A7	65.71	6	9	14
A8	100	0	3	1
A9	57.14	6	7	9
A10	100	0	3	7

>TRINITY_DN122082_c1_g2_i3 from sample A1 / Example spliced isoform

ACACAACTCAGGCAACTATGGGGACTTTCCACAATCAAGACCAAACATCAGGGCAACCAACTAGAGTGATCAAGGTATCAAATCCAACTCACCAAAGGTAAGTTTTGCATTCAGGTTTTCAAAGGTAGAGTATGTTGGAGACATGTGTGGAGGACCTGTGAGTCGTAAAGTGTACTTACATACGTTTCGGACCTCAGAGC
CGGGTCCATATTTAGGAGTGAGAGTGTCTCAATGGAATTAGCGGCTTAAGGTATTATTGAGTTGCACTATTCCACGAGCAATGTTGATCCGTTTCCTTTCAAGATGTCTGATCTTTTCCAGCATGTCCCTTCCATGGAGGGATCTAATGTTTGCATTCAGGTTTTCACAGGTAGAGTATGTTGGAGACATGTGTGGAGGA
CCTGTGAGTCGTAAAGTGTACTTACATACGTTTCGGACCTCAGAGCCGGGTCCATATTTAGGAGTGAGAGTGTCTCAATGGAATTAGCGGCTTAAGGTATTATTGAGTTGCACTATTTCACGAGCAATGTTGATCCGTTTCCGTTCAAGATGTCTAATCTTATCCAGCATGTCCCTTCCATGGAGGGATCTAATGTTTGT
ATTCAGGTTTTCACAGGTAGAGTATGTTGGAGACATGTTAGTTTTCAAAGGTAAGTTTTGTCGCCAACTCAGAGCCGAGACACAAACTAACAAGGATGCTATCCAACATAGAGGAAAAAGTGGGGAGGTCCTCCATATCACAGGCTAAGGTGTAAGTCAGGGTAAAAACCAAAAGTGG

>TRINITY_DN122082_c1_g2_i2 from sample A1 / Example unspliced isoform:

ACACAACTCAGGCAACTATGGGGACTTTCCACAATCAAGACCAAACATCAGGGCAACCAACTAGAGTGATCAAGGTATCAAATCCAACTCACCAAAGGTAAGTTTTGCATTCAGGTTTTCAAAGGTAGAGTATGTTGGAGACATGTGTGGAGGACCTGTGAGTCGTAAAGTGTACTTACATACGTTTCGGACCTCAGAGC
CGGGTCCATATTTCTTCAGGAGTGAGAGTGTCTCAATGGAATTAGCGGCTTAAGGTATTATTGAGTTGCACTATTCCACGAGCAATGTTGATCCGTTTCCTTTCAAGATGTCTGATCTTTTCCAGCATGTCCCTTCCATGGAGGGATCTAATGTTTGCATTCAGGTTTTCACAGGTAGAGTATGTTGGAGACATGTGTGG
AGGACCTGTGAGTCGTAAAGTGTACTTACATACGTTTCGGACCTCAGAGCCGGGTCCATATTTAGGAGTGAGAGTGTCTCAATGGAATTAGCGGCTTAAGGTATTATTGAGTTGCACTATTTCACGAGCAATGTTGATCCGTTTCCGTTCAAGATGTCTAATCTTATCCAGCATGTCCCTTCCATGGAGGGATCTAATGT
TTGTATTCAGgttttcacaggtagagtatgttggagacgtgtggaggacctgcgagtggtaaattgtacttaagtacgtttcggacctcaaggccgggtcaaacttcaagagtgagagtttctcaatggaattagcggcttagggtattattgagttgcgctattccacgagcaatgttgacctgtttccgttcaagatg
tctgatcttatccagcgtgtcccttccatggagagatctaatatttgcattcagGTTTTCACAGGTAGAGTATGTTGGAGACATGTTAGTTTTCAAAGGTAAGTTTTGTCGCCAACTCAGAGCCGAGACACAAACTAACAAGGATGCTATCCAACATAGAGGAAAAAGTGGGGAGGTCCTCCATATCACAGGCTAAGGTG
TAAGTCAGGGTAAAAACCAAAAGTGG

Intron 2 GTTTTCACAG ... TTGCATTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.49	9	20	21
A2	54.17	11	14	12
A3	65.22	8	11	19
A4	51.85	13	11	17
A5	47.37	5	4	5
A6	33.33	1	1	0
A7	65.71	6	10	13
A8	100	0	3	1
A9	55.56	4	4	6
A10	100	0	3	5

>TRINITY_DN114872_c4_g4_i1 from sample A3 / Example spliced isoform

CAACTCAGGCAACTATGGGGACTTTCCACAATCAAGACCAAACATCAGGGCAACCAACTAGAGTGATCAAGGTATCAAATCCAACTCACCAAAGGTAAGTTTTGCATTCAGGTTTTCATAGGTAGAGTATGTTGGAGACATGTGTGGAGGACCTGTGAGTCGTAAAGTGTACTTACATACGTTTCGGACCTCAGAGCCGG
GTCCATCTTCAGGAGTGAGAGTGTCTCAATGGAATTAGCGACTTAAGGTATTATTGAATTGCACTATTCCACGAGCAATGTTGATCCGTTTCCGTTCAAGATGTCTAATCTTATCCAGCATGTCCCTTCCATGGAGGGATCTAATGTTTGTATTCAGGTTTTCACAGGTAGAGTATGTTGGAGACATGTTAGTTTTCAAA
GGTAAGTTTTGTCGCCAACTCAGAGCCGAGACACAAACTAACAAGGATGCTATCCAACATAGAGGAAAAAGTGGGGAGGTCCTCCATATCACAGGCTAAG

>TRINITY_DN114872_c4_g4_i3 from sample A3 / Example unspliced isoform:

CAACTCAGGCAACTATGGGGACTTTCCACAATCAAGACCAAACATCAGGGCAACCAACTAGAGTGATCAAGGTATCAAATCCAACTCACCAAAGGTAAGTTTTGCATTCAGGTTTTCATAGGTAGAGTATGTTGGAGACATGTGTGGAGGACCTGTGAGTCGTAAAGTGTACTTACATACGTTTCGGACCTCAGAGCCGG
GTCCATCTTCAGGAGTGAGAGTGTCTCAATGGAATTAGCGACTTAAGGTATTATTGAATTGCACTATTCCACGAGCAATGTTGATCCGTTTCCGTTCAAGATGTCTAATCTTATCCAGCATGTCCCTTCCATGGAGGGATCTAATGTTTGTATTCAGgttttcacaggtagagtatgttggagacatgtgtggaggacct
gcgagtggtaaattgtacttaagtacgtttcggacctcaaggccgggtcaaacttcaagagtgagagtttctcaatggaattagcggcttagggtattattgagttgcgctattccacgagcaatgttgacctgtttccgttcaagatgtctgatcttatccagcgtgtcccttccatggagagatctaatatttgcatt
cagGTTTTCACAGGTAGAGTATGTTGGAGACATGTTAGTTTTCAAAGGTAAGTTTTGTCGCCAACTCAGAGCTGAGACACAAACTAACAGGGATG