sp|Q9S7G7|MB3R1_ARATH ----> Transcription factor MYB3R-1
Intron 1 GTACAGTCTA ... CTTGATAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 75 | 41 | 59 |
| A2 | 38.46 | 84 | 46 | 59 |
| A3 | 41.21 | 92 | 59 | 70 |
| A4 | 36.56 | 72 | 31 | 52 |
| A5 | 33.33 | 29 | 19 | 10 |
| A6 | 40.54 | 33 | 19 | 26 |
| A7 | 39.01 | 86 | 32 | 78 |
| A8 | 40.26 | 23 | 13 | 18 |
| A9 | 40.08 | 77 | 52 | 51 |
| A10 | 38.66 | 73 | 39 | 53 |
>TRINITY_DN47615_c0_g3_i3 from sample A10 / Example spliced isoformCCGTGCCAAAGACGTCTAACCCTATAGCAAGCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTG
ACACAGCGGCCTTCTCGAGCTGTCCTAAGGTTGAAACAACGGAGGAATCGCAATTTATTGCAGCTCTGAATATTTATTGGCAATCAGGTCTACTTTCTGTGTTAAATGACCGAGATGCGGCTCTGATAATGTCTGAAACCTTTTGCCTTACGCCGCATTTCAGCTGCTCGGTCTGCGAGTTCGAGTCCCGCAGCCTCGCC
AGCCGTAAAACCCTAGGTCTTTAAGTAAAGGACGTGGCAAACGCGGATTGTGTTTGATCAAACTCTCCTTGGCTTTGCAGGGATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAG
AGAGTGCAAAACTAACAGAGCTCAAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAACATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAAAATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCAC
CGGTGCACGGGCGGATAGGAGGTCCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGAGAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATCTTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAG
GGTCCTTGGAAGAAAGCAGAAGATGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCAAAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACAACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCA
CCAAATACATGGGAACAAATGGGCTGAATTGGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAACAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTGAAAGAGTTTCCTGGTTTGGCTGTTTTGAAGCCTACAATAGGGTCTGCCTCCTCAGCAGGAGGATCCTTTA
ATGAAGTTCAAGAAGGAGCAGCATTGGAAGAGATATCTGAATGTAGTCAGGAATCTACTTCTTCTCATTGTCATTTATCTGGTTCATTTGTGGTGCATCCTACATCATCTGTACAAATGGGACATGAAAGATCAGAATTGCAAAAGGAATTATGCAAGATGAATTCAGATAATGAATTAGAAATCTTGCATGAACCTCTG
CTGTCATTAGGTTCTAAGACTGATGGTTTCTTGCTGCTACAAGATGGACATGCTGGGTATTCTAATTCTCCCATATCTGAAGCAGTGCCTCGTGTATCATCTTGTGAAATAAATGAACTTACAGAGTCTGTTATAACAGGAAATAGCTGCTCTGTTGGCAGCCCAAAAGAAGTTTCCAACACTGTTAATGTGTCAATGTC
TATGCCTTCAGGTGGTCTCGAATCATTAGGCTTCGAGCCTGGAGGGTCAACATCTGCTGCCCAAGACATGGTCTCATCTTCAGCATTTTACACGTGTCTTCTGTTGGACTCGACTGATATGGTTGGGATACCACATAGTCCATGTGCACCAGCTTTTGTGGATTCAATGTATCCAATTTGTCCAGGTTCCTCAGATAGGA
TGTTGAATAGCATTGTCAGGGTAGGGGATGGAATCTGCTCAACAGAAATACCCTCTTCTGTATTGAATAGTGGTATATGTGATGGGGCAGGATGTGTTCAATTGGCCTCTGAGTTTCAGCACAGTGATGAGATGTTGCAATACTGCAAACCTATTATTCAGGATTTAAAGATGGACTATCAGGATGGTAGGTCTGGTCCT
GAAGTGTTGAGTTTGACATTTGATGAGAAAGTAGTCAGTTCCAAGGTGGAAACTACTAATGTGCAGGCAGAAAGTCCAATTTCTGAGTCTTTGTTCTATGAACCCCCTCGTCTTCCTAGCTTGGATTTTCCATTTATTAACTGTGATATAAATTCATGTAACCATCTTCAGCAGGCATACAGCCCTCTTGGTGTTCGGCA
AATGATAATGTCAGCAGTTAACTGTTCTACTCCTTACTCTATATGGGGTTCTCATGACAAAAGTCCAGACTCTTTCTTAAAGAGTGCAGCAAAGAGCTTCAGAAATACACCTTCCATTTTAAGGAAACGGCGACGAGAGTCTTCAACTCCGGTGCAGAGTGGTCAACATGACAAAAATAGGCTCAGTGCAATAGATTATG
ACAGTTTTCTTTCGCATAGTTCATTGGATGAAAAAGAGAATTCATTGAAGGATACCTCCAGTGCAGATTTCCAGATTGCCTTTGCTGAAGATGGAGTGTTTTCCCCTTCAAACAAAAAACCAATTATTGTATCGCCACCATATTACTTGTATACAAAAAGTACTGTACCAGGAAAATCCAAGGAGAAACAGTTATTGTAT
GCTCGTGAAGGTACAAATTATACAAGAGCTGAAAATGGGTGTAGTGCAGATATTGGTGTTGTAGGTAGCCGTGAATCTGACACCAGACAAACTGGCAAAGATGAAATACACAGGGCAAACATCCATTTGAGTTTTGAAAATGTGCAAACTGGTGGGATTCTTGTTGAACAAGACATAAATAGTCCACTGTTCTCTACAAG
TGGAAATAATTCACATCAAACTCGCAGAATGATTTACTCTCCATTAACTCCAAAGACACTTTTTGGTAGAAGATCAGAGACACCTGCAAAACATACTGACCACAAAGGAACAATGAAATCCACATCAGGAATTATACAATCACCATATATTGATTCACCTAATTCATGTGAAAAGAAGCAGGAGTTAAAATCGAATTATT
TGGTTTCAAGCTGTCAAACTCCTGCTGTTAGTGCTTCAAAGGTTGTTGATCACATCATTGACCAAGATTGGCTGAACAATGTCCCCGATTTAGACAACCTCAGCATAAATTTTTGCCCATTTAGTGTTGATAGAAGTCTTGGATCTCCTTTTGAATGGAAATCACCGTGGTCTTTGGATGCACGTTCGCCATCGGAAAAG
CATGACATGAGCATGCTGATAAACAGTGCGGATGGAAAAGATGATGCTGTTGGATTGATGAAACATTTATGTGAGCATGCTGCTTCAGCATATGCACAGGCAGAGGAGATTTTGTCTAATGATGAAAAGAATTTATCACAAATTGCCACAGCAGCCCGAGCTTGAAATTCTAATCTTAACGAAGATAACAGGGATTGTAA
AGAAAATACCCTGGATAAGAATTTTAGTAGGGAGAGTTCCACACAATTTTCTGGTTACAGTGGTATGGGAAAGGTTGACATTTTGATCTAGCTCTATATTTGTTGGATTAATGAAACATCTATGTGAGCATGCCGCTTCAGTGGATGCACAGGCAGAGGAGATTTTGTCTAATGAAACTCAGGAAAAAAATGTATCACAA
GGTGTCACATCAGCCTGGGCTTCAAATTCTAATCTTAATGAAAATAAAAGGGACTGTAAAGAAAATATCCTGAATATGAATTTTAGAGGGAAGTGTTCCACACAATTTTCAAGTTACAGTGAGTGTGGTATGAAAAAGGGTTCACATTTTGTTCTAGCTTTATGTTACACTTGAATAGCCTTTTCTATTTTGGGTTAGAA
AATATCGTTTGTATCTTTGCTCTTAGATTGCCTATGCATGCTTGGAGCTACATTGGACATTATTACTACCAATTTATACCCAAGAAATACCTTCTGATTCTAGTATTATCTTCTTCTAATGGTTGTTTGAACTGCTCATATCGATCAATGATTAGAAGGAATGAATTTGTATTGATACCCTCTATCCAAGAAACATTCAA
TGAAACTGATAAATATGTTCTGGAGTGTCTGGTTGTAATGCCTAGGACACTAGCGATAAATATAAGAAGTACTCTAGGCATGGACAAAGAATCAGCAGGTGTCTAATAATATCACCTGGAGAAGAGTTTGGAGGCAATTTTTGGTGTAGTTGTGAGTGGCTGAGAAACTATTCTGATCTGGATCTTAACATCTTTGCAAT
CTGATTTATCATTTTCTACACAAACATATTGTGTCTGCCAGATAAAAGATACAGAGGTGCAATTTTGTGTTACAAAACGGTAGTCCTCAAATATTAATCATAATTAACCCGATTTTATGAGTTCT
>TRINITY_DN47615_c0_g3_i2 from sample A10 / Example unspliced isoform:CCGTGCCAAAGACGTCTAACCCTATAGCAAGCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTG
ACACAGCGGCCTTCTCGAGCTGTCCTAAGGTTGAAACAACGGAGGAATCGCAATTTATTGCAGCTCTGAATATTTATTGGCAATCAGGTCTACTTTCTGTGTTAAATGACCGAGATGCGGCTCTGATAATGTCTGAAACCTTTTGCCTTACGCCGCATTTCAGCTGCTCGGTCTGCGAGTTCGAGTCCCGCAGCCTCGCC
AGCCGTAAAACCCTAGGTCTTTAAGTAAAGGACGTGGCAAACGCGGATTGTGTTTGATCAAACTCTCCTTGGCTTTGCAGGGATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAG
AGAGTGCAAAACTAACAGAGCTCAAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAACATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAAAATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCAC
CGGTGCACGGGCGGATAGGAGGTCCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGAGAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATCTTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAG
GGTCCTTGGAAGAAAGCAGAAGATGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCAAAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACAACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCA
CCAAATACATGGGAACAAATGGGCTGAATTGGCCAAGTTTCTACCGGGAAGgtacagtctaggaccttgatagagGACAGATAATGCGATAAAGAATCATTGGAACAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTGAAAGAGTTTCCTGGTTTGGCTGTTTTGAAGCCTACAATAGGGTCTG
CCTCCTCAGCAGGAGGATCCTTTAATGAAGTTCAAGAAGGAGCAGCATTGGAAGAGATATCTGAATGTAGTCAGGAATCTACTTCTTCTCATTGTCATTTATCTGGTTCATTTGTGGTGCATCCTACATCATCTGTACAAATGGGACATGAAAGATCAGAATTGCAAAAGGAATTATGCAAGATGAATTCAGATAATGAA
TTAGAAATCTTGCATGAACCTCTGCTGTCATTAGGTTCTAAGACTGATGGTTTCTTGCTGCTACAAGATGGACATGCTGGGTATTCTAATTCTCCCATATCTGAAGCAGTGCCTCGTGTATCATCTTGTGAAATAAATGAACTTACAGAGTCTGTTATAACAGGAAATAGCTGCTCTGTTGGCAGCCCAAAAGAAGTTTC
CAACACTGTTAATGTGTCAATGTCTATGCCTTCAGGTGGTCTCGAATCATTAGGCTTCGAGCCTGGAGGGTCAACATCTGCTGCCCAAGACATGGTCTCATCTTCAGCATTTTACACGTGTCTTCTGTTGGACTCGACTGATATGGTTGGGATACCACATAGTCCATGTGCACCAGCTTTTGTGGATTCAATGTATCCAA
TTTGTCCAGGTTCCTCAGATAGGATGTTGAATAGCATTGTCAGGGTAGGGGATGGAATCTGCTCAACAGAAATACCCTCTTCTGTATTGAATAGTGGTATATGTGATGGGGCAGGATGTGTTCAATTGGCCTCTGAGTTTCAGCACAGTGATGAGATGTTGCAATACTGCAAACCTATTATTCAGGATTTAAAGATGGAC
TATCAGGATGGTAGGTCTGGTCCTGAAGTGTTGAGTTTGACATTTGATGAGAAAGTAGTCAGTTCCAAGGTGGAAACTACTAATGTGCAGGCAGAAAGTCCAATTTCTGAGTCTTTGTTCTATGAACCCCCTCGTCTTCCTAGCTTGGATTTTCCATTTATTAACTGTGATATAAATTCATGTAACCATCTTCAGCAGGC
ATACAGCCCTCTTGGTGTTCGGCAAATGATAATGTCAGCAGTTAACTGTTCTACTCCTTACTCTATATGGGGTTCTCATGACAAAAGTCCAGACTCTTTCTTAAAGAGTGCAGCAAAGAGCTTCAGAAATACACCTTCCATTTTAAGGAAACGGCGACGAGAGTCTTCAACTCCGGTGCAGAGTGGTCAACATGACAAAA
ATAGGCTCAGTGCAATAGATTATGACAGTTTTCTTTCGCATAGTTCATTGGATGAAAAAGAGAATTCATTGAAGGATACCTCCAGTGCAGATTTCCAGATTGCCTTTGCTGAAGATGGAGTGTTTTCCCCTTCAAACAAAAAACCAATTATTGTATCGCCACCATATTACTTGTATACAAAAAGTACTGTACCAGGAAAA
TCCAAGGAGAAACAGTTATTGTATGCTCGTGAAGGTACAAATTATACAAGAGCTGAAAATGGGTGTAGTGCAGATATTGGTGTTGTAGGTAGCCGTGAATCTGACACCAGACAAACTGGCAAAGATGAAATACACAGGGCAAACATCCATTTGAGTTTTGAAAATGTGCAAACTGGTGGGATTCTTGTTGAACAAGACAT
AAATAGTCCACTGTTCTCTACAAGTGGAAATAATTCACATCAAACTCGCAGAATGATTTACTCTCCATTAACTCCAAAGACACTTTTTGGTAGAAGATCAGAGACACCTGCAAAACATACTGACCACAAAGGAACAATGAAATCCACATCAGGAATTATACAATCACCATATATTGATTCACCTAATTCATGTGAAAAGA
AGCAGGAGTTAAAATCGAATTATTTGGTTTCAAGCTGTCAAACTCCTGCTGTTAGTGCTTCAAAGGTTGTTGATCACATCATTGACCAAGATTGGCTGAACAATGTCCCCGATTTAGACAACCTCAGCATAAATTTTTGCCCATTTAGTGTTGATAGAAGTCTTGGATCTCCTTTTGAATGGAAATCACCGTGGTCTTTG
GATGCACGTTCGCCATCGGAAAAGCATGACATGAGCATGCTGATAAACAGTGCGGATGGAAAAGATGATGCTGTTGGATTGATGAAACATTTATGTGAGCATGCTGCTTCAGCATATGCACAGGCAGAGGAGATTTTGTCTAATGATGAAAAGAATTTATCACAAATTGCCACAGCAGCCCGAGCTTGAAATTCTAATCT
TAACGAAGATAACAGGGATTGTAAAGAAAATACCCTGGATAAGAATTTTAGTAGGGAGAGTTCCACACAATTTTCTGGTTACAGTGGTATGGGAAAGGTTGACATTTTGATCTAGCTCTATATTTGTTGGATTAATGAAACATCTATGTGAGCATGCCGCTTCAGTGGATGCACAGGCAGAGGAGATTTTGTCTAATGAA
ACTCAGGAAAAAAATGTATCACAAGGTGTCACATCAGCCTGGGCTTCAAATTCTAATCTTAATGAAAATAAAAGGGACTGTAAAGAAAATATCCTGAATATGAATTTTAGAGGGAAGTGTTCCACACAATTTTCAAGTTACAGTGAGTGTGGTATGAAAAAGGGTTCACATTTTGTTCTAGCTTTATGTTACACTTGAAT
AGCCTTTTCTATTTTGGGTTAGAAAATATCGTTTGTATCTTTGCTCTTAGATTGCCTATGCATGCTTGGAGCTACATTGGACATTATTACTACCAATTTATACCCAAGAAATACCTTCTGATTCTAGTATTATCTTCTTCTAATGGTTGTTTGAACTGCTCATATCGATCAATGATTAGAAGGAATGAATTTGTATTGAT
ACCCTCTATCCAAGAAACATTCAATGAAACTGATAAATATGTTCTGGAGTGTCTGGTTGTAATGCCTAGGACACTAGCGATAAATATAAGAAGTACTCTAGGCATGGACAAAGAATCAGCAGGTGTCTAATAATATCACCTGGAGAAGAGTTTGGAGGCAATTTTTGGTGTAGTTGTGAGTGGCTGAGAAACTATTCTGA
TCTGGATCTTAACATCTTTGCAATCTGATTTATCATTTTCTACACAAACATATTGTGTCTGCCAGATAAAAGATACAGAGGTGCAATTTTGTGTTACAAAACGGTAGTCCTCAAATATTAATCATAATTAACCCGATTTTATGAGTTCT
Intron 2 GTCTACTTTC ... GGCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.91 | 16 | 90 | 32.2 |
| A2 | 70.94 | 34 | 83 | 34 |
| A3 | 70.3 | 30 | 71 | 60.9 |
| A4 | 71.15 | 30 | 74 | 34.3 |
| A5 | 62.69 | 25 | 42 | 20.2 |
| A6 | 54.55 | 5 | 6 | 5.3 |
| A7 | 64.71 | 24 | 44 | 22.4 |
| A8 | 65.22 | 8 | 15 | 6.9 |
| A9 | 75 | 17 | 51 | 25.3 |
| A10 | 73.26 | 23 | 63 | 27.8 |
>TRINITY_DN123595_c0_g3_i5 from sample A2 / Example spliced isoformGCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTGACACAGCGGCCTTCTCGAGCTGTCCTAAGG
TTGAAACAACGGAGGAATCGCAATTTATTGCAGCTCTGAATATTTATTGGCAATCAGGGATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAGAGAGTGCAAAACTAACAGAGCTC
AAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAACATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAAAATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCACCGGTGCACGGGCGGATAGGAGGT
CCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGAGAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATCTTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAGGGTCCTTGGAAGAAAGCAGAAGA
TGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCAAAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACAACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCACCAAATACATGGGAACAAATGGG
CTGAATTGGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAACAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTGAAAGAGTTTCCTG
>TRINITY_DN123595_c0_g3_i2 from sample A2 / Example unspliced isoform:GCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTGACACAGCGGCCTTCTCGAGCTGTCCTAAGG
TTGAAACAACGGAGGAATCGCAATTTATTGCAGCTCTGAATATTTATTGGCAATCAGgtctactttctgtgttaaatgaccgagatgcggctctgataatgtctgaaaccttttgccttacgccgcatttcagctgctcggtctgcgagttcgagtcccgcagcctcgccagccgtaaaaccctaggtctttaagtaaag
gacgtggcaaacgcggattgtgtttgatcaaactctccttggctttgcagGGATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGGTTCCTGTTTTACTTTTAGACCTCTAGCTTGTTAAGTTTCTTTCCTGTCATATTTCAGTTCGATTCCCTCAGTTGAAGCCCTAATTTGCCAGAA
ACGCAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAGAGAGTGCAAAACTAACAGAGCTCAAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAACATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAA
AATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCACCGGTGCACGGGCGGATAGGAGGTCCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGAGAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATC
TTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAGGGTCCTTGGAAGAAAGCAGAAGATGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCAAAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACA
ACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCACCAAATACATGGGAACAAATGGGCTGAATTGGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAACAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTG
AAAGAGTTTCCTG
Intron 3 GTTGAAACAA ... GGCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.42 | 20 | 47 | 32.2 |
| A2 | 48.17 | 46 | 53 | 34 |
| A3 | 50.81 | 48 | 39 | 60.9 |
| A4 | 55.84 | 34 | 52 | 34.3 |
| A5 | 54.26 | 17 | 21 | 20.2 |
| A6 | 55.01 | 5 | 7 | 5.3 |
| A7 | 39.1 | 33 | 21 | 22.4 |
| A8 | 56.89 | 6 | 9 | 6.9 |
| A9 | 54.4 | 23 | 30 | 25.3 |
| A10 | 45.7 | 28 | 20 | 27.8 |
>TRINITY_DN123595_c0_g3_i4 from sample A2 / Example spliced isoformGCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTGACACAGCGGCCTTCTCGAGCTGTCCTAAGG
GATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAGAGAGTGCAAAACTAACAGAGCTCAAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAAC
ATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAAAATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCACCGGTGCACGGGCGGATAGGAGGTCCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGA
GAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATCTTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAGGGTCCTTGGAAGAAAGCAGAAGATGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCA
AAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACAACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCACCAAATACATGGGAACAAATGGGCTGAATTGGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAA
CAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTGAAAGAGTTTCCTG
>TRINITY_DN123595_c0_g3_i3 from sample A2 / Example unspliced isoform:GCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTGACACAGCGGCCTTCTCGAGCTGTCCTAAGg
ttgaaacaacggaggaatcgcaatttattgcagctctgaatatttattggcaatcaggtctactttctgtgttaaatgaccgagatgcggctctgataatgtctgaaaccttttgccttacgccgcatttcagctgctcggtctgcgagttcgagtcccgcagcctcgccagccgtaaaaccctaggtctttaagtaaag
gacgtggcaaacgcggattgtgtttgatcaaactctccttggctttgcagGGATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAGAGAGTGCAAAACTAACAGAGCTCAAAGTTC
GTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAACATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAAAATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCACCGGTGCACGGGCGGATAGGAGGTCCTACAA
GACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGAGAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATCTTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAGGGTCCTTGGAAGAAAGCAGAAGATGAAAGG
ATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCAAAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACAACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCACCAAATACATGGGAACAAATGGGCTGAATT
GGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAACAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTGAAAGAGTTTCCTG
Intron 4 GTTGAAACAA ... TGGCAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.46 | 20 | 9 | 16 |
| A2 | 36.11 | 46 | 18 | 34 |
| A3 | 30.94 | 48 | 13 | 30 |
| A4 | 43.33 | 34 | 22 | 30 |
| A5 | 51.43 | 17 | 11 | 25 |
| A6 | 52.38 | 5 | 6 | 5 |
| A7 | 34 | 33 | 10 | 24 |
| A8 | 42.86 | 6 | 1 | 8 |
| A9 | 35.21 | 23 | 8 | 17 |
| A10 | 40.43 | 28 | 15 | 23 |
>TRINITY_DN123595_c0_g3_i4 from sample A2 / Example spliced isoformGCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTGACACAGCGGCCTTCTCGAGCTGTCCTAAGG
GATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAGAGAGTGCAAAACTAACAGAGCTCAAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAAC
ATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAAAATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCACCGGTGCACGGGCGGATAGGAGGTCCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGA
GAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATCTTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAGGGTCCTTGGAAGAAAGCAGAAGATGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCA
AAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACAACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCACCAAATACATGGGAACAAATGGGCTGAATTGGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAA
CAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTGAAAGAGTTTCCTG
>TRINITY_DN123595_c0_g3_i5 from sample A2 / Example unspliced isoform:GCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTGACACAGCGGCCTTCTCGAGCTGTCCTAAGg
ttgaaacaacggaggaatcgcaatttattgcagctctgaatatttattggcaatcagGGATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAGAGAGTGCAAAACTAACAGAGCTC
AAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAACATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAAAATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCACCGGTGCACGGGCGGATAGGAGGT
CCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGAGAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATCTTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAGGGTCCTTGGAAGAAAGCAGAAGA
TGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCAAAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACAACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCACCAAATACATGGGAACAAATGGG
CTGAATTGGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAACAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTGAAAGAGTTTCCTG
Intron 5 GTTCCTGTTT ... AGAAACGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.17 | 29.8 | 24 | 16 |
| A2 | 16.36 | 51.3 | 6 | 14 |
| A3 | 21.92 | 66.2 | 20 | 17 |
| A4 | 29.12 | 36.6 | 14 | 16 |
| A5 | 19.87 | 26.4 | 7 | 6 |
| A6 | 23.57 | 5.2 | 3 | 0 |
| A7 | 23.46 | 31.2 | 9 | 10 |
| A8 | 36.22 | 10.6 | 6 | 6 |
| A9 | 30.13 | 22.3 | 11 | 8 |
| A10 | 15.09 | 33.8 | 2 | 10 |
>TRINITY_DN123595_c0_g3_i4 from sample A2 / Example spliced isoformGCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTGACACAGCGGCCTTCTCGAGCTGTCCTAAGG
GATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAGAGAGTGCAAAACTAACAGAGCTCAAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAAC
ATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAAAATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCACCGGTGCACGGGCGGATAGGAGGTCCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGA
GAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATCTTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAGGGTCCTTGGAAGAAAGCAGAAGATGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCA
AAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACAACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCACCAAATACATGGGAACAAATGGGCTGAATTGGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAA
CAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTGAAAGAGTTTCCTG
>TRINITY_DN123595_c0_g3_i2 from sample A2 / Example unspliced isoform:GCGGCGGTGACGGGGCTCGAGAGTTACTTACTCGAATCGGACGGCCAGGAAAGACTCGAGATACCTCTGCCGTCGGATTCGTCTCAACTGCCTGAACTTTATGAGAACCATGTACAAGGCGCTTATGCAGATTTGAAAGAGTAAAGAGACTGGAAATGATCGAACGATTGACACAGCGGCCTTCTCGAGCTGTCCTAAGG
TTGAAACAACGGAGGAATCGCAATTTATTGCAGCTCTGAATATTTATTGGCAATCAGGTCTACTTTCTGTGTTAAATGACCGAGATGCGGCTCTGATAATGTCTGAAACCTTTTGCCTTACGCCGCATTTCAGCTGCTCGGTCTGCGAGTTCGAGTCCCGCAGCCTCGCCAGCCGTAAAACCCTAGGTCTTTAAGTAAAG
GACGTGGCAAACGCGGATTGTGTTTGATCAAACTCTCCTTGGCTTTGCAGGGATTTGCTTCTACGGATCGTTGACATATTTATGGCTCCGTTGCTTCCATTATAAGgttcctgttttacttttagacctctagcttgttaagtttctttcctgtcatatttcagttcgattccctcagttgaagccctaatttgccagaa
acgcagAGGGAAGTGCGAAATTTGGAACATGCTTGGCTTTCGAGGAAATGGCAGGGGTTAAAGTAAAGAGAGAGTGCAAAACTAACAGAGCTCAAAGTTCGTATCACTCCACTGGCATTAACGATGGGTTACAGAAATTGGAGCCTGTAACATGCTCGGCTTTGGAGGAAACGGCAGGTGATGAAATAAAGAGGGAGGAA
AATGCAGAGAACAAAGCTAACAGCTCGTCTCTCTCTGTCGCCGTTGACGATGCATTGCAGGAATTACCACCGGTGCACGGGCGGATAGGAGGTCCTACAAGACGCTCATCCAAGGGGGGATGGACACCTGAAGAGGATGAGACATTGAGGAGAGCTGTTCAGTTTTACAAGGGCAAAAATTGGAAGAAAATAGCGGAATC
TTTTACTGGTCGTACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTTAATCCAGAGCTTGTGAAGGGTCCTTGGAAGAAAGCAGAAGATGAAAGGATTGTGGAGCTTGTCAATAAGTATGGGGGCAAAAAGTGGTCTGTGATTGCAAAGCATTTGCCAGGGCGCATTGGAAAACAATGCCGTGAAAGGTGGCACA
ACCATCTAAATCCAGAAATAAATAAAGATGCATGGAGCTTAGAGGAAGAGTTGTCACTCGTTCGTGCTCACCAAATACATGGGAACAAATGGGCTGAATTGGCCAAGTTTCTACCGGGAAGGACAGATAATGCGATAAAGAATCATTGGAACAGCTCAATAAAGAAGAAGCTGGAGTCATATCTGGCATCTGGTCTTGTG
AAAGAGTTTCCTG