sp|Q56X46|MSL2_ARATH ----> Mechanosensitive ion channel protein 2, chloroplastic

Intron 1 GTATGTTCTG ... GCATTGCTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	24.04	72.7	25	21
A2	16.57	73	16	13
A3	13.75	69	10	12
A4	17.77	81	23	12
A5	23.4	36	13	9
A6	17.24	12	2	3
A7	18.71	63	13	16
A8	27.27	8	4	2
A9	16.52	48	10	9
A10	24.36	59	16	22

>TRINITY_DN47456_c1_g6_i1 from sample A7 / Example spliced isoform

GCCAAGGAGGGGAAAACATCTCATTTCATTAGCCATCAAGGATTGGTTTTGTGGAGTGGGGATTGAAATTTGGAATCCAATCAACAACAATGGTCAACTACATTTCAAGGCCAATAATGCTTTTTGGAAACATAGGGCAATAGAGGACCAGCCATTCATGTCGAGTCGTCGTCTCTCATCATGTGCTCGGAGACAGGATG
CTTGGAGCCTCAGGTTGTCGAAAAGAGTAAGCATGCCACTGCGTAGAGTCCCCACTTTTCGTGGTGTTGTCACCTGCCAATCTGTATTCAGTTCAAGACAATTAAACCATGCAATTTTACTGTCCATTAAACCTGCAGCTTTATCATTGACCAGGGCATACAATGCCTTGCAAGGGAGCCCTCTTTTGCTTCAGTGTGCT
CCAGCAGTTGGGCTAATGGCATTTTCTGTCTGGGGTCTTGCGCCAACTCTGCAAGTTATTCGTCATTTGATACTTCGTCGGAATGCTAGCAATTGGAAAAAAAGCAGCACATATTACATCATGACCTCTTATTTACAGCCAATTCTGCTATGGGCTGGTGCAATATTGATATGCAGGGCATTTGATCCTGTTGTGTTATC
CTCTGAAACAAGCCAAGCTGTCAAGCAGCGGCTTGTAAATTTTGTGAGATCGCTATCAACTGTCCTGGCATTTGCATATTGTATATCTAGCTTGATTCAGCAGGTGCAGAAATTTGCAATGGAGCACAATGACACCCAGGACACAAGACATGTTGGATTCAATTTCATTGGAAAAGCTATTTATACTGCAGTGTGGGTGG
CGGCAGTATCCTTGTTCATGGAGCTGTTGGGGTTTTCAACACAGAAATGGATCACTGCTGGAGGGCTGGGAACAGTTCTGTTGACTCTTGCTGGTCGTGAGATATTTACCAATTTCCTGTCAAGTGTAATGATCCATGCGACCCGGCCTTTTATCGTGAATGAGTGGATTCAAACCAAGATTGATGGCTATGAAGTTTCT
GGAACCGTGGAACATGTTGGTTGGTGGTCTCCAACTATTGTCAGAGGAGATGATCGGGAGGCTGTGCATAT

>TRINITY_DN47456_c1_g6_i3 from sample A7 / Example unspliced isoform:

CACACGTCAGTAGTCTTCCATGGCTATAAACAATTATCGACAAAAGAGATAAGGGGGAAATCATTATTGTTGTACTTTTCAATCTTTTAAATTCCTACCAAGCCTCTGAAACCCTCCCCCTTCACATCAGACACAAGAAATGAAATAGTGGGGGATTCGGAGGAACAGTGGCCTTATTCTCCCAACATCTTGGTTCCAAT
TTATTGGCAAATTTAATCGGAAGCTCTGCACTGATTCGGCTATAGCTAAATCAGGTTTTGATAATTCATATTGTCCTTGCTGTTAAGGACTTTTTCTTCCAATCTTCAGTTCAAGTACTTAGAAAGAAGCAAAATTCTGGAGTTTGAGAAACAATATGGTTCTTCCAAACTAATATTTACACTGAATCAATATCAATGAT
GGCGGCTACAAGTTCTTTGCAATTATTTCATGTTGAAAGGATTTGCAACCACCGTGGACAGTCTACTTGCTTTGAGAGACAGGATGCTTGGAGCCTCAGGTTGTCGAAAAGAGTAAGCATGCCACTGCGTAGAGTCCCCACTTTTCGTGGTGTTGTCACCTGCCAATCTGTATTCAGTTCAAGACAATTAAACCATGCAA
TTTTACTGTCCATTAAACCTGCAGCTTTATCATTGACCAGGGCATACAATGCCTTGCAAGGGAGCCCTCTTTTGCTTCAGTGTGCTCCAGCAGTTGGGCTAATGGCATTTTCTGTCTGGGGTCTTGCGCCAACTCTGCAAGTTATTCGTCATTTGATACTTCGTgtatgttctgaaacccgaagaatggcattgctagCG
GAATGCTAGCAATTGGAAAAAAAGCAGCACATATTACATCATGACCTCTTATTTACAGCCAATTCTGCTATGGGCTGGTGCAATATTGATATGCAGGGCATTTGATCCTGTTGTGTTATCCTCTGAAACAAGCCAAGCTGTCAAGCAGCGGCTTGTAAATTTTGTGAGATCGCTATCAACTGTCCTGGCATTTGCATATT
GTATATCTAGCTTGATTCAGCAGGTGCAGAAATTTGCAATGGAGCACAATGACACCCAGGACACAAGACATGTTGGATTCAATTTCATTGGAAAAGCTATTTATACTGCAGTGTGGGTGGCGGCAGTATCCTTGTTCATGGAGCTGTTGGGGTTTTCAACACAGAAATGGATCACTGCTGGAGGGCTGGGAACAGTTCTG
TTGACTCTTGCTGGTCGTGAGATATTTACCAATTTCCTGTCAAGTGTAATGATCCATGCGACCCGGCCTTTTATCGTGAATGAGTGGATTCAAACCAAGATTGATGGCTATGAAGTTTCTGGAACCGTGGAACATGTTGGTTGGTGGTCTCCAACTATTGTCAGAGGAGATGATCGGGAGGCTGTGCATAT