NA ----> NA
Intron 1 GTAAGGACGA ... AGTGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 9 | 8 | 10 |
| A2 | 60 | 5 | 6 | 9 |
| A3 | 33.33 | 11 | 5 | 6 |
| A4 | 47.83 | 6 | 11 | 0 |
| A5 | 42.86 | 4 | 3 | 3 |
| A6 | 32.08 | 54 | 13 | 38 |
| A7 | 44.95 | 30 | 27 | 22 |
| A8 | 15.07 | 31 | 6 | 5 |
| A9 | 42.55 | 27 | 21 | 19 |
| A10 | 36.59 | 39 | 28 | 17 |
>TRINITY_DN106563_c0_g1_i2 from sample A3 / Example spliced isoformTTAGACAACATTTTCCATACTAAAATTAGCACCTAGCTTCTCTGGTCGCGAACTTTGTTAACCATCTGGCCATTTATATGCATATTCTATGTATTGCAATTTCCTGTTGCGGCAAAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAATCCATGTAAGGA
CGATTCCTGTCTACACCGAGTTGCCCTGATAGACTAGAATGTAACATGAAGTTGAGGGGTCAATCTCAGGTTTCTACATATCAAATCTGCGTCAAACAACCTTCAATCCATTGTCTACTGAAGGTGCATCAACAAATATAATTAAGTATGGCAGCAACAGATGATTCTGGAGAAGTTGTTCAAAAGGATGCAGCAAGGAA
AAAGGCAAATATAGACTGGGGAGCCACAACAGTAATAGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAGGCACTTGCATCAGCTAGCAAGGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTAATGAGGGATGCCTTGGAGAAGAGGTTCATAAGAGTCGCACGTG
GCTCTATTTTAGGAGGGGCAAAGCTTGGCTTATTTACTGCATGTTTTAGTGGTCTGCAGCATCTTCTTGCAGAAAGACGAGGTGTCCATGATGCATTTAATATTGCCGGAGCTGGTTCTGCAACTGCCGCAGCATTTGGACTCCTATTGCCTGGATCCCTACGCTGGCGTGCTAGAAATGTGCTGGCAGGTTCAGTTCTA
GGTGCAGCAGTAGGCCTGCCACTCGGTTGGGTTCAAGTTAGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCATCGAATGTGGAAGACAGTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTGGAGGAAACTTTCACTAAGTAGGCTATGACGTGAACAAAATTTCTGGCCTTTATTGA
ATCAGTCATGCCAAAAATTGTTAGGGTGAAGGTTCCTTTAATGCTCTATGAATTTTTTTGACTTATATGTCCTAGTTACCATCAAAGATGTATATTGAAATTTCAGTTTATCACTTCTGTGTTACATTTAGATACAGCAGAAAACCCCGAGTAATGGATTTATTGCCTAGAGTAATTCAGCTGTATTTTGGGTCATTTTC
CACCTCATAATAACTGTTCCTCTCTTGCATTAATGCCAAACAGCTCTGTTGCCTATTTGTTGATATATATATTCTAAGGAAACAATGAGGGCTCTCCTCTATTATTTGCAATTGAGGAGAGGTTGCCGTTATAAGCTGACACACTATTACATCAAGGGTGGGTAGGCCGTCAGACTGAATGCAGCTTCACTGCTACAACA
ATGAAACAACAAGAAGCATTTGGGGATGGAGCATGCCTGCTCCTTGTTTGAACTTGGCTCATTGTGACGAGAGCTACTCCAAGTTGCCACTAGACCACATCTTGATGAATACGTTAATTAGGTG
>TRINITY_DN106563_c0_g1_i5 from sample A3 / Example unspliced isoform:TTAGACAACATTTTCCATACTAAAATTAGCACCTAGCTTCTCTGGTCGCGAACTTTGTTAACCATCTGGCCATTTATATGCATATTCTATGTATTGCAATTTCCTGTTGCGGCAAAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAATCCATGTAAGGA
CGATTCCTGTCTACACCGAGTTGCCCTGATAGACTAGAATGTAACATGAAGTTGAGGGGTCAATCTCAGGTTTCTACATATCAAATCTGCGTCAAACAACCTTCAATCCATgtaaggacgattcctgtctacaccgagttgccctgatagactatctatattctaaattagaccgattatctatattctaaattagagcg
attcaatagcttgtttgctcttcacgggcttcaattatttgctataagtccattcgaaatggttttgaaatagcaaggaagaaggaatgtgcgaaggacttattttgaatcggaaagagtgtatcagTGTCTACTGAAGGTGCATCAACAAATATAATTAAGTATGGCAGCAACAGATGATTCTGGAGAAGTTGTTCAAA
AGGATGCAGCAAGGAAAAAGGCAAATATAGACTGGGGAGCCACAACAGTAATAGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAGGCACTTGCATCAGCTAGCAAGGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTAATGAGGGATGCCTTGGAGAAGAGGTTC
ATAAGAGTCGCACGTGGCTCTATTTTAGGAGGGGCAAAGCTTGGCTTATTTACTGCATGTTTTAGTGGTCTGCAGCATCTTCTTGCAGAAAGACGAGGTGTCCATGATGCATTTAATATTGCCGGAGCTGGTTCTGCAACTGCCGCAGCATTTGGACTCCTATTGCCTGGATCCCTACGCTGGCGTGCTAGAAATGTGCT
GGCAGGTTCAGTTCTAGGTGCAGCAGTAGGCCTGCCACTCGGTTGGGTTCAAGTTAGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCATCGAATGTGGAAGACAGTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTGGAGGAAACTTTCACTAAGTAGGCTATGACGTGAACAAAAT
TTCTGGCCTTTATTGAATCAGTCATGCCAAAAATTGTTAGGGTGAAGGTTCCTTTAATGCTCTATGAATTTTTTTGACTTATATGTCCTAGTTACCATCAAAGATGTATATTGAAATTTCAGTTTATCACTTCTGTGTTACATTTAGATACAGCAGAAAACCCCGAGTAATGGATTTATTGCCTAGAGTAATTCAGCTGT
ATTTTGGGTCATTTTCCACCTCATAATAACTGTTCCTCTCTTGCATTAATGCCAAACAGCTCTGTTGCCTATTTGTTGATATATATATTCTAAGGAAACAATGAGGGCTCTCCTCTATTATTTGCAATTGAGGAGAGGTTGCCGTTATAAGCTGACACACTATTACATCAAGGGTGGGTAGGCCGTCAGACTGAATGCAG
CTTCACTGCTACAACAATGAAACAACAAGAAGCATTTGGGGATGGAGCATGCCTGCTCCTTGTTTGAACTTGGCTCATTGTGACGAGAGCTACTCCAAGTTGCCACTAGACCACATCTTGATGAATACGTTAATTAGGTG
Intron 2 GTAAGGACGA ... TTTGAAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 3 | 5 |
| A2 | 60 | 5 | 10 | 5 |
| A3 | 60 | 5 | 11 | 4 |
| A4 | 69.23 | 4 | 17 | 1 |
| A5 | 80.95 | 2 | 13 | 4 |
| A6 | 51.61 | 15 | 16 | 16 |
| A7 | 57.65 | 18 | 25 | 24 |
| A8 | 50 | 5 | 7 | 3 |
| A9 | 56.76 | 16 | 32 | 10 |
| A10 | 63.16 | 14 | 33 | 15 |
>TRINITY_DN45356_c7_g1_i2 from sample A8 / Example spliced isoformGGGGAGGAAAATTAGACAACATTTTCCATACTAAAATTAGCACCTAGCTTCTCTGGTCGCGAACTTTGTTAACCATCTGGCCATTTATATGCATATTCTATGTATTGCAATTTCCTGTTGCGGCAAAGAATGTAACATGAAGTTGAGGGGTCAATCTCAGGTTTCTACATATCAAATCTGCGTCAAACAACCTTCAATCC
ATCAAGGAAGAAGGAATGTGCGAAGGACTTATTTTGAATCGGAAAGAGTGTATCAGTGTCTACTGAAGGTTGCATCAACAAATATAATTAAGTATGGCAGCAACAGATGATTCTGGAGAAGTTGTTCAAAAGCAGGATGCAGCAAGGAAAAAGGCAAATATAGACTGGGGAGCCACAACAGTAATAGGTGTTATTGCTGG
GTTGCTATATGGGGGCAGCAGAGAGGCACTTGCATCAGCTAGCAAGGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTAATGAGGGATGCCTTGGAGAAGAGGTTCATAAGAGTCGCACGTGGCTCTATTTTAGGAGGGGCAAAGCTTGGCTTATTTACTGCATGTTTTAGTG
GTCTGCAGCATCTTCTTGCAGAAAGACGAGGTGTCCATGATGCATTTAATATTGCCGGAGCTGGTTCTGCAACTGCCGCAGCATTTGGACTCCTATTGCCTGGATCCCTACGCTGGCGTGCTAGAAATGTGCTGGCGGGTTCAGTTCTAGGTGCAGCAGTAGGCCTGCCACTCGGTTGGGTTCAAGTTAGACTTGTTGAG
AGTGCAAAAGAAAGGATTGCTTCTATGCCACCGAATGTGGAAGACAGTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTGGAGGAAACTTTCACTAAGTAGGCTATGATGTGAACAAAATTTCTGACCTTTATTGAATCAGTCATGCCAAAAATTGTTAGGGTGAAGGTTCCTTTAATGCTCTATGA
ATTTTTTTGACTTATATGTCCTAGTTACCATCAAAGATGTATATTGAAATTTCAGTTTATCACTTCTGTGTTACATTTAGATACAGCAGAAAACCCCGAGTAATGGATTTATTGCCTAGAGTAATTCAGCTGTATTTTGGGTCATTTTCCACCTCATAATAACTGTTCCTCTCTTGCATTAATGACAAACAGCTCTGTTG
CCTATTTGTTGATATATATATTCTAAGGAAACAATGAGGGCTCTCCTCTATTATTTGCAATTGAGGAGAGGTTGCCGTTATAAGCTGACACACTATTACATCAAGGGTGGGTAGGCCGTCAGACTGAATGCAGCTTCACTGCTACAACAATGAAACAACAAGAAGCATTTGGGGATGGAGCATGCCTGCTCCTTGTTTGA
ACTTGGCTCATTGTGACGAGAGCTACTCCAAGTTGCCACTAGACCACAACCCAATGGACAATGTTTATATATATATATATATAGGGGTGGAGCATGTCTGCCCCTGTTTGAACTTGGCTCATTGTGATGAGAGCTACTCCAAGTTGCTACTAGACCACAACCCAACAGACAATATGTGTGTGTGTGTGTAGGCTGAGAAG
CATGCCCAAAACTTGATCACCTTTAGACTTCCATTGATGGGGAGATGCAAATAATGTTTCTTTTGAATGGGTAATTTAAAGATTGAAGATTGAAAAGTATGCCTAGAAGTTAATCACCTTTTGGACTTCCACTGATGGACATTGCAAATATTGGTTCTTTTGTATACACCCCTATTGGAAATGTGTGAAGAAATCACTAG
TTTCCCAAACAGAAAAAAAGAAGAGATTGTTAT
>TRINITY_DN45356_c7_g1_i6 from sample A8 / Example unspliced isoform:GGGGAGGAAAATTAGACAACATTTTCCATACTAAAATTAGCACCTAGCTTCTCTGGTCGCGAACTTTGTTAACCATCTGGCCATTTATATGCATATTCTATGTATTGCAATTTCCTGTTGCGGCAAAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAAT
CCATgtaaggacgattcctgtctacaccgagttgccctgatagactagaatgtaacatgaagttgaggggtcaatctgaggtttctacatatcaaatctgtgcgtcaaacaaccttcaatccatgtaaggacgattcctgtctacaccgagttgccctgatagactatctatattctaaattagagcgattcaatagctt
gtttgctcttcacgggcttcaattatttgctataagtccattcgaaatggttttgaaatagCAAGGAAGAAGGAATGTGCGAAGGACTTATTTTGAATCGGAAAGAGTGTATCAGTGTCTACTGAAGGTTGCATCAACAAATATAATTAAGTATGGCAGCAACAGATGATTCTGGAGAAGTTGTTCAAAAGCAGGATGCA
GCAAGGAAAAAGGCAAATATAGACTGGGGAGCCACAACAGTAATAGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAGGCACTTGCATCAGCTAGCAAGGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTAATGAGGGATGCCTTGGAGAAGAGGTTCATAAGAGT
CGCACGTGGCTCTATTTTAGGAGGGGCAAAGCTTGGCTTATTTACTGCATGTTTTAGTGGTCTGCAGCATCTTCTTGCAGAAAGACGAGGTGTCCATGATGCATTTAATATTGCCGGAGCTGGTTCTGCAACTGCCGCAGCATTTGGACTCCTATTGCCTGGATCCCTACGCTGGCGTGCTAGAAATGTGCTGGCGGGTT
CAGTTCTAGGTGCAGCAGTAGGCCTGCCACTCGGTTGGGTTCAAGTTAGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCACCGAATGTGGAAGACAGTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTGGAGGAAACTTTCACTAAGTAGGCTATGATGTGAACAAAATTTCTGACC
TTTATTGAATCAGTCATGCCAAAAATTGTTAGGGTGAAGGTTCCTTTAATGCTCTATGAATTTTTTTGACTTATATGTCCTAGTTACCATCAAAGATGTATATTGAAATTTCAGTTTATCACTTCTGTGTTACATTTAGATACAGCAGAAAACCCCGAGTAATGGATTTATTGCCTAGAGTAATTCAGCTGTATTTTGGG
TCATTTTCCACCTCATAATAACTGTTCCTCTCTTGCATTAATGACAAACAGCTCTGTTGCCTATTTGTTGATATATATATTCTAAGGAAACAATGAGGGCTCTCCTCTATTATTTGCAATTGAGGAGAGGTTGCCGTTATAAGCTGACACACTATTACATCAAGGGTGGGTAGGCCGTCAGACTGAATGCAGCTTCACTG
CTACAACAATGAAACAACAAGAAGCATTTGGGGATGGAGCATGCCTGCTCCTTGTTTGAACTTGGCTCATTGTGACGAGAGCTACTCCAAGTTGCCACTAGACCACAACCCAATGGACAATGTTTATATATATATATATATAGGGGTGGAGCATGTCTGCCCCTGTTTGAACTTGGCTCATTGTGATGAGAGCTACTCCA
AGTTGCTACTAGACCACAACCCAACAGACAATATGTGTGTGTGTGTGTAGGCTGAGAAGCATGCCCAAAACTTGATCACCTTTAGACTTCCATTGATGGGGAGATGCAAATAATGTTTCTTTTGAATGGGTAATTTAAAGATTGAAGATTGAAAAGTATGCCTAGAAGTTAATCACCTTTTGGACTTCCACTGATGGACA
TTGCAAATATTGGTTCTTTTGTATACACCCCTATTGGAAATGTGTGAAGAAATCACTAGTTTCCCAAACAGAAAAAAAGAAGAGATTGTTAT
Intron 3 GTAAGGACGA ... TTTGAAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.24 | 1 | 10 | 5 |
| A2 | 76.92 | 3 | 15 | 5 |
| A3 | 67.88 | 3.3 | 10 | 4 |
| A4 | 80 | 2 | 15 | 1 |
| A5 | 73.07 | 1.3 | 3 | 4 |
| A6 | 60.51 | 11.3 | 17 | 16 |
| A7 | 76.77 | 8.3 | 30 | 24 |
| A8 | 67.58 | 2.7 | 8 | 3 |
| A9 | 52.19 | 17 | 27 | 10 |
| A10 | 68.62 | 12.7 | 40 | 15 |
>TRINITY_DN43395_c0_g1_i8 from sample A6 / Example spliced isoformCCCTACCTTCTCTGGTCGCGAACTTTGTTAACCATCTGGCCATTTATATGCATATTCTATGTATTGCAATTTCCTGTTGCGGCAAAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAATCCATGTAAGGACGATTCCTGTCTACACCGAGTTGCCCTGAT
AGACTAGAATGTAACATGAAGTTGAGGGGTCAATCTCAGGTTTCTACATATCAAATCTGCGTCAAACAACCTTCAATCCATCAAGGAAGAAGGAATGTGCGAAGGACTTATTTTGAATCGGAAAGAGTGTATCAGTGTCTACTGAAGGTGCATCAACAAATATAATTAAGTATGGCAGCAACAGATGATTCTGGAGAAGT
TGTTCAAAAGCAGGATGCAGCAAGGAAAAAGGCAAATATAGACTGGGGAGCCACAACAGTAATAGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAGGCACTTGCATCAGCTAGCAAGGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTAATGAGGGATGCCTTGG
AGAAGAGGTTCATAAGAGTCGCACGTGGCTCTATTTTAGGAGGGGCAAAGCTTGGCTTATTTACTGCATGTTTTAGTGGTCTGCAGCATCTTCTTGCAGAAAGACGAGGTGTCCATGATGCATTTAATATTGCCGGAGCTGGTTCTGCAACTGCCGCAGCATTTGGACTCCTATTGCCTGGATCCCTACGCTGGCGTGCT
AGAAATGTGCTGGCGGGTTCAGTTCTAGGTGCAGCAGTAGGCCTGCCACTCGGTTGGGTTCAAGTTAGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCACCGAATGTGGAAGACAGTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTGGAGGAAACTTTCACTAAGTAGGCTATGAT
GTGAACAAAATTTCTGACCTTTATTGAATCAGTCATGCCAAAATTGTTAGGGTGAAGGTTCCTTTAATGCTCTATGAATTTTTTTGACTTATATGTCCTAGTTACCATCAAAGATGTATATTGAAATTTCAGTTTATCACTTCTGTGTTACATTTGGATACAGCAGATTACATTTAGATACAGCAGAAAACCCCGAGTAA
TGGATTTATTGCCTAGAGTAATTCAGCTGTATTTTGGGTCATTTTCCACCTCATAATAACTGTTCCTCTCTTGCATTAATGCCAAACAGCTCTGTTGCCTATTTGTTGATATATATATTCTAAGGAAACAATGAGGGCTCTCCTCTATTATTTGCAATTGAGGAGAGGTTGCCGTTATAAGCTGACACACTATTACATCA
AGGGTGGGTAGGCCGTCAGACTGAATGCAGCTTCACTGCTACAACAATGAAACAACAAGAAGCATTTGGGGATGGAGCATGCCTGCTCCTTGTTTGAACTTGGCTCATTGTGACGAGAGCTACTCCAAGTTGCCACTAGACCACAACCCAATGGACAATGTTTATATATATATATATATAGGGGTGGAGCATGTCTGCCC
CTGTTTGAACTTGGCTCATTGTGATGAGAGCTACTCCAAGTTGCTACTAGACCACAACCCAACAGACAATATGTGTGTGTGTGTGTAGGCTGAGAAGCATGCCCAAAACTTGATCACCTTTAGACTTCCATTGATGGGGAGATGCAAATAATGTTTCTTTTGAATGGGTAATTTAAAGATTGAAGATTGAAAAGTATGCC
TAGAAGTTAATCACCTTTTGGACTTCCACTGATGGACATTGCAAATATTGGTTCTTTTGTATACACCCCTATTGGAAATGTGTGAAGAAATCACGAG
>TRINITY_DN43395_c0_g1_i5 from sample A6 / Example unspliced isoform:CCCTACCTTCTCTGGTCGCGAACTTTGTTAACCATCTGGCCATTTATATGCATATTCTATGTATTGCAATTTCCTGTTGCGGCAAAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAATCCATGTAAGGACGATTCCTGTCTACACCGAGTTGCCCTGAT
AGACTAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAATCCATgtaaggacgattcctgtctacaccgagttgccctgatagactatctatattctaaattagagcgattcaatagcttgtttgctcttcacgggcttcaattatttgctataagtccat
tcgaaatggttttgaaatagCAAGGAAGAAGGAATGTGCGAAGGACTTATTTTGAATCGGAAAGAGTGTATCAGTGTCTACTGAAGGTTGCATCAACAAATATAATTAAGTATGGCAGCAACAGATGATTCTGGAGAAGTTGTTCAAAAGGATGCAGCAAAGAAAAAGGCAAATATAGACTGGGGAGCCACAACAGTAAT
AGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAGGCACTTGCATCAGCTAGCAAGGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTAATGAGGGATGCCTTGGAGAAGAGGTTCATAAGAGTCGCACGTGGCTCTATTTTAGGAGGGGCAAAGCTTGGCTTATTTA
CTGCATGTTTTAGTGGTCTGCAGCATCTTCTTGCAGAAAGACGAGGTGTCCATGATGCATTTAATATTGCCGGAGCTGGTTCTGCAACTGCCGCAGCATTTGGACTCCTATTGCCTGGATCCCTACGCTGGCGTGCTAGAAATGTGCTGGCGGGTTCAGTTCTAGGTGCAGCAGTAGGCCTGCCACTCGGTTGGGTTCAA
GTTAGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCACCGAATGTGGAAGACAGTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTGGAGGAAACTTTCACTAAGTAGGCTATGATGTGAACAAAATTTCTGACCTTTATTGAATCAGTCATGCCAAAATTGTTAGGGTGAAGGTTCCT
TTAATGCTCTATGAATTTTTTTGACTTATATGTCCTAGTTACCATCAAAGATGTATATTGAAATTTCAGTTTATCACTTCTGTGTTACATTTGGATACAGCAGATTACATTTAGATACAGCAGAAAACCCCGAGTAATGGATTTATTGCCTAGAGTAATTCAGCTGTATTTTGGGTCATTTTCCACCTCATAATAACTGT
TCCTCTCTTGCATTAATGCCAAACAGCTCTGTTGCCTATTTGTTGATATATATATTCTAAGGAAACAATGAGGGCTCTCCTCTATTATTTGCAATTGAGGAGAGGTTGCCGTTATAAGCTGACACACTATTACATCAAGGGTGGGTAGGCCGTCAGACTGAATGCAGCTTCACTGCTACAACAATGAAACAACAAGAAGC
ATTTGGGGATGGAGCATGCCTGCTCCTTGTTTGAACTTGGCTCATTGTGACGAGAGCTACTCCAAGTTGCCACTAGACCACAACCCAATGGACAATGTTTATATATATATATATATAGGGGTGGAGCATGTCTGCCCCTGTTTGAACTTGGCTCATTGTGATGAGAGCTACTCCAAGTTGCTACTAGACCACAACCCAAC
AGACAATATGTGTGTGTGTGTGTAGGCTGAGAAGCATGCCCAAAACTTGATCACCTTTAGACTTCCATTGATGGGGAGATGCAAATAATGTTTCTTTTGAATGGGTAATTTAAAGATTGAAGATTGAAAAGTATGCCTAGAAGTTAATCACCTTTTGGACTTCCACTGATGGACATTGCAAATATTGGTTCTTTTGTATA
CACCCCTATTGGAAATGTGTGAAGAAATCACGAG
Intron 4 GTAAGGACGA ... AGTGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.63 | 9 | 10 | 10 |
| A2 | 70.59 | 5 | 15 | 9 |
| A3 | 42.11 | 11 | 10 | 6 |
| A4 | 55.56 | 6 | 15 | 0 |
| A5 | 42.86 | 4 | 3 | 3 |
| A6 | 33.74 | 54 | 17 | 38 |
| A7 | 46.43 | 30 | 30 | 22 |
| A8 | 17.33 | 31 | 8 | 5 |
| A9 | 46 | 27 | 27 | 19 |
| A10 | 42.22 | 39 | 40 | 17 |
>TRINITY_DN106563_c0_g1_i2 from sample A3 / Example spliced isoformTTAGACAACATTTTCCATACTAAAATTAGCACCTAGCTTCTCTGGTCGCGAACTTTGTTAACCATCTGGCCATTTATATGCATATTCTATGTATTGCAATTTCCTGTTGCGGCAAAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAATCCATGTAAGGA
CGATTCCTGTCTACACCGAGTTGCCCTGATAGACTAGAATGTAACATGAAGTTGAGGGGTCAATCTCAGGTTTCTACATATCAAATCTGCGTCAAACAACCTTCAATCCATTGTCTACTGAAGGTGCATCAACAAATATAATTAAGTATGGCAGCAACAGATGATTCTGGAGAAGTTGTTCAAAAGGATGCAGCAAGGAA
AAAGGCAAATATAGACTGGGGAGCCACAACAGTAATAGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAGGCACTTGCATCAGCTAGCAAGGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTAATGAGGGATGCCTTGGAGAAGAGGTTCATAAGAGTCGCACGTG
GCTCTATTTTAGGAGGGGCAAAGCTTGGCTTATTTACTGCATGTTTTAGTGGTCTGCAGCATCTTCTTGCAGAAAGACGAGGTGTCCATGATGCATTTAATATTGCCGGAGCTGGTTCTGCAACTGCCGCAGCATTTGGACTCCTATTGCCTGGATCCCTACGCTGGCGTGCTAGAAATGTGCTGGCAGGTTCAGTTCTA
GGTGCAGCAGTAGGCCTGCCACTCGGTTGGGTTCAAGTTAGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCATCGAATGTGGAAGACAGTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTGGAGGAAACTTTCACTAAGTAGGCTATGACGTGAACAAAATTTCTGGCCTTTATTGA
ATCAGTCATGCCAAAAATTGTTAGGGTGAAGGTTCCTTTAATGCTCTATGAATTTTTTTGACTTATATGTCCTAGTTACCATCAAAGATGTATATTGAAATTTCAGTTTATCACTTCTGTGTTACATTTAGATACAGCAGAAAACCCCGAGTAATGGATTTATTGCCTAGAGTAATTCAGCTGTATTTTGGGTCATTTTC
CACCTCATAATAACTGTTCCTCTCTTGCATTAATGCCAAACAGCTCTGTTGCCTATTTGTTGATATATATATTCTAAGGAAACAATGAGGGCTCTCCTCTATTATTTGCAATTGAGGAGAGGTTGCCGTTATAAGCTGACACACTATTACATCAAGGGTGGGTAGGCCGTCAGACTGAATGCAGCTTCACTGCTACAACA
ATGAAACAACAAGAAGCATTTGGGGATGGAGCATGCCTGCTCCTTGTTTGAACTTGGCTCATTGTGACGAGAGCTACTCCAAGTTGCCACTAGACCACATCTTGATGAATACGTTAATTAGGTG
>TRINITY_DN106563_c0_g1_i4 from sample A3 / Example unspliced isoform:TTAGACAACATTTTCCATACTAAAATTAGCACCTAGCTTCTCTGGTCGCGAACTTTGTTAACCATCTGGCCATTTATATGCATATTCTATGTATTGCAATTTCCTGTTGCGGCAAAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAATCCATGTAAGGA
CGATTCCTGTCTACACCGAGTTGCCCTGATAGACTAGAATGTAACATGAAGTTGAGGGGTCAATCTGAGGTTTCTACATATCAAATCTGTGCGTCAAACAACCTTCAATCCATgtaaggacgattcctgtctacaccgagttgccctgatagactatctatattctaaattagagcgattcaatagcttgtttgctcttc
acgggcttcaattatttgctataagtccattcgaaatggttttgaaatagcaaggaagaaggaatgtgcgaaggacttattttgaatcggaaagagtgtatcagTGTCTACTGAAGGTGCATCAACAAATATAATTAAGTATGGCAGCAACAGATGATTCTGGAGAAGTTGTTCAAAAGGATGCAGCAAGGAAAAAGGCA
AATATAGACTGGGGAGCCACAACAGTAATAGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAGGCACTTGCATCAGCTAGCAAGGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTAATGAGGGATGCCTTGGAGAAGAGGTTCATAAGAGTCGCACGTGGCTCTAT
TTTAGGAGGGGCAAAGCTTGGCTTATTTACTGCATGTTTTAGTGGTCTGCAGCATCTTCTTGCAGAAAGACGAGGTGTCCATGATGCATTTAATATTGCCGGAGCTGGTTCTGCAACTGCCGCAGCATTTGGACTCCTATTGCCTGGATCCCTACGCTGGCGTGCTAGAAATGTGCTGGCAGGTTCAGTTCTAGGTGCAG
CAGTAGGCCTGCCACTCGGTTGGGTTCAAGTTAGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCATCGAATGTGGAAGACAGTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTGGAGGAAACTTTCACTAAGTAGGCTATGACGTGAACAAAATTTCTGGCCTTTATTGAATCAGTC
ATGCCAAAAATTGTTAGGGTGAAGGTTCCTTTAATGCTCTATGAATTTTTTTGACTTATATGTCCTAGTTACCATCAAAGATGTATATTGAAATTTCAGTTTATCACTTCTGTGTTACATTTAGATACAGCAGAAAACCCCGAGTAATGGATTTATTGCCTAGAGTAATTCAGCTGTATTTTGGGTCATTTTCCACCTCA
TAATAACTGTTCCTCTCTTGCATTAATGCCAAACAGCTCTGTTGCCTATTTGTTGATATATATATTCTAAGGAAACAATGAGGGCTCTCCTCTATTATTTGCAATTGAGGAGAGGTTGCCGTTATAAGCTGACACACTATTACATCAAGGGTGGGTAGGCCGTCAGACTGAATGCAGCTTCACTGCTACAACAATGAAAC
AACAAGAAGCATTTGGGGATGGAGCATGCCTGCTCCTTGTTTGAACTTGGCTCATTGTGACGAGAGCTACTCCAAGTTGCCACTAGACCACATCTTGATGAATACGTTAATTAGGTG