sp|Q9SNC6|PUB13_ARATH ----> U-box domain-containing protein 13
Intron 1 GTACTAGTCG ... TGTGATCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.93 | 17 | 5 | 4 |
| A2 | 25 | 15 | 5 | 5 |
| A3 | 31.58 | 13 | 3 | 9 |
| A4 | 15.79 | 24 | 7 | 2 |
| A5 | 29.41 | 6 | 0 | 5 |
| A6 | 31.03 | 20 | 13 | 5 |
| A7 | 23.08 | 30 | 8 | 10 |
| A8 | 18.75 | 13 | 1 | 5 |
| A9 | 23.68 | 29 | 10 | 8 |
| A10 | 17.86 | 23 | 3 | 7 |
>TRINITY_DN43118_c0_g1_i1 from sample A6 / Example spliced isoformGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGG
AGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGAC
CTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAG
GGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAGATGGCATGCCATATG
ATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTT
TCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCC
TGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTC
AATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGAT
AACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAG
GGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTG
TGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTGCTGTGCTGCTAGCTTTG
GCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCCTATATTTATTGTAAATATGTCAGGGTACA
TTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTTTTCAATTTGAGGTTTCCTTCCTGGCATAT
GGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGACAATATTTATGATGTGGGATGCCAATGTT
ACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGGTAATTTAATGAAGTTCAACCTGTGGACAA
GGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCAATGTGAACAACTTCCTACAGTCTTACATTATATTATATTGTTCAGTTCCTGAAAGCTAGATAAATAGCCTTCTCCAA
TAAATTGGTTGTTTTGTGGTCTTCGGCAAGTGAAGGTCAACACCTGTAGCAACGTGCTGGGTATGAACTGCATTTCTATGACCTAGTTTGACATCACAAGATATTCGGAGCTGGTTAAGAATCCCTATTCTTAAAATGGTAGTGTGATTTTCATTAACGTCATGTATCTTTAAGAAACAGTTAATC
>TRINITY_DN43118_c0_g1_i4 from sample A6 / Example unspliced isoform:AGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGG
GTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAG
CAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAAC
ATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGgtactagtcgcttcattcattctcttctttctgcccctcctttacatcgactcatttctgggccacatgttgcttggtcggtcagaagttcatttgtaatacacaatgctcagcatgttttcattcataaaatttagtgttt
gagctcttgggagtggcagttgcataacatttctttatctttcagctacagactacatagagatttatttcatgttgtttttagtcacatcggatgattaatttgagggtttcaactttcatggtgtgatctagGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTA
GATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACT
CCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAG
AGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTT
CGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGC
AAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATG
GCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCT
GTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTGC
TGTGCTGCTAGCTTTGGCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCCTATATTTATTGTA
AATATGTCAGGGTACATTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTTTTCAATTTGAGGT
TTCCTTCCTGGCATATGGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGACAATATTTATGAT
GTGGGATGCCAATGTTACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGGTAATTTAATGAAG
TTCAACCTGTGGACAAGGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCAATGTGAACAACTTCCTACAGTCTTACATTATATTATATTGTTCAGTTCCTGAAAGCTAGAT
AAATAGCCTTCTCCAATAAATTGGTTGTTTTGTGGTCTTCGGCAAGTGAAGGTCAACACCTGTAGCAACGTGCTGGGTATGAACTGCATTTCTATGACCTAGTTTGACATCACAAGATATTCGGAGCTGGTTAAGAATCCCTATTCTTAAAATGGTAGTGTGATTTTCATTAACGTCATGTATCTTTAAGAAACAGTTAA
TC
Intron 2 GTGCGGATCT ... GGATCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.17 | 8.8 | 9.8 | 11 |
| A2 | 80.38 | 6.3 | 26.3 | 24 |
| A3 | 68.44 | 14.8 | 30.3 | 34 |
| A4 | 84.98 | 7.6 | 41.1 | 45 |
| A5 | 83.78 | 3 | 13 | 18 |
| A6 | 80 | 2 | 4 | 12 |
| A7 | 74.86 | 7.6 | 23.3 | 22 |
| A8 | 71.46 | 2.6 | 3.6 | 9 |
| A9 | 66.45 | 10.8 | 26.8 | 16 |
| A10 | 72.31 | 11.6 | 26.6 | 34 |
>TRINITY_DN115353_c0_g1_i1 from sample A1 / Example spliced isoformGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGAC
AGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTC
TCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGC
ATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCA
AACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATG
GATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAA
AGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGT
GGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATA
GATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTT
GTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACT
>TRINITY_DN115353_c0_g1_i5 from sample A1 / Example unspliced isoform:GCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGgtgcggatctcttcttcacccttgcgttcaattcagtgttgataata
acaacatcttattccaatctggcatatgcattattcatcacagagctggttgttgttgctttctcggatctgtagAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAA
TGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGG
GGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATT
GTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAG
ATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTC
CAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGA
GAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGGTAGGGATCAATCTCTTTTTGTATCATTTGAAGTTGCATATGCAGTTAGTTTGGAAAAATTAAATAAAGTGTGTGCTGGTTGTGTGTAGACATATGACCGATTATGCAT
T
Intron 3 GCTTTGGACG ... TGATATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85 | 3 | 17 | 0 |
| A2 | 75 | 5 | 15 | 1 |
| A3 | 92.86 | 1 | 13 | 5 |
| A4 | 75 | 8 | 24 | 1 |
| A5 | 100 | 0 | 6 | 2 |
| A6 | 69.23 | 8 | 18 | 1 |
| A7 | 76.92 | 9 | 30 | 15 |
| A8 | 81.25 | 3 | 13 | 4 |
| A9 | 74.36 | 10 | 29 | 5 |
| A10 | 79.31 | 6 | 23 | 6 |
>TRINITY_DN46486_c0_g1_i10 from sample A7 / Example spliced isoformGTTCATTTGGGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGT
GTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTATTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGA
ATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATG
AAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCT
TACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCAACTCATTGGAAAGGACACATGTTTTGCCATTGGCCTTTATACAGGTAGAACTGA
TGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAA
GAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGAT
GAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTC
CAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTG
AAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGA
GAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGG
TTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAACCATTCATATTCTTGTCAAGCTCATTTATTTAGGCTCTGCTCACAATAAGGAGAATGCTCTTGCAATTTTTGTTTAAAAGCCAACCCGGCCACACTTTTCCGC
>TRINITY_DN46486_c0_g1_i3 from sample A7 / Example unspliced isoform:GTTCATTTGGGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGT
GTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTATTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGA
ATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATG
AAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCT
TACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGgctttggacggtgaagcaatttctggtagattccatgcactgactgaagaactagat
cgtattctagatggcatgccatatgatttattagagatttcagatgaagtcagagagcaggcaaccttcttgatatccagGCAACTCATTGGAAAGGACACATGTTTTGCCATTGGCCTTTATACAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGG
ATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAA
GGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTG
GGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAG
ATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTG
TCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGG
AACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTG
GACATCAATCA
Intron 4 GTAATGATCT ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.48 | 20 | 11 | 1.8 |
| A2 | 34.78 | 15 | 8 | 0 |
| A3 | 41.94 | 18 | 13 | 3.6 |
| A4 | 38.46 | 16 | 10 | 1 |
| A5 | 0 | 4 | 0 | 1.8 |
| A6 | 35.42 | 31 | 17 | 3.6 |
| A7 | 30.56 | 50 | 22 | 5.3 |
| A8 | 35.23 | 20 | 10.9 | 3.6 |
| A9 | 25 | 36 | 12 | 7.9 |
| A10 | 25.93 | 20 | 7 | 6.3 |
>TRINITY_DN99124_c0_g1_i1 from sample A3 / Example spliced isoformGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGTGTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTA
TTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTT
TCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATC
ATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCT
TCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAG
ATGAAGTCAGAGAGCAGGCAACTCATTGGAAAGGACACATGTTTTGCCATTGGCCTTTATACAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGC
TAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCT
AGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACC
AAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAAC
TTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAG
CTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAA
CAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGG
AGAATGCTGCTGCTGTGCTGCTAGCTTTGGCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCC
TATTTTTATTGTAAATATGTCAGGGTACATTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTT
TTCAATTTGAGGTTTCCTTCCTGGCATATGGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGA
CAATATTTATGATGTGGGATGCCAATGTTACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGG
TAATTTAATGAAGTTCAACCTGTGGACAAGGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCA
>TRINITY_DN99124_c0_g1_i2 from sample A3 / Example unspliced isoform:GAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGTGTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTA
TTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTT
TCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATC
ATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCT
TCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAG
ATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAG
TCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTA
CATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGgtaatgatctgcttctcatgtttctcttgaagttgcaagtcttttttaattgttaggttcaataaactaagatttttgtcttttgcagACCTATGAGCGATCA
Intron 5 GTAATACACA ... TGTGATCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 4 | 2 | 4 |
| A2 | 83.33 | 1 | 0 | 5 |
| A3 | 60 | 6 | 2 | 9 |
| A4 | 50 | 2 | 0 | 2 |
| A5 | 71.43 | 2 | 0 | 5 |
| A6 | 35.71 | 9 | 4 | 5 |
| A7 | 55.56 | 8 | 1 | 10 |
| A8 | 71.43 | 2 | 1 | 5 |
| A9 | 53.33 | 7 | 2 | 8 |
| A10 | 50 | 7 | 2 | 7 |
>TRINITY_DN43118_c0_g1_i2 from sample A6 / Example spliced isoformGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGTGTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTATTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAG
ATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTT
TGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAG
TCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAG
ACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGTACTAGTCGCTTCATTCATTCTCTTCTTTCTGCCCCTCCTTTACATCGACTCATTTCTGGGCCACATGTTGCTTGGTCGGTCAGAAGTTCATTTGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCT
AGATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAAC
TCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCA
GAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCT
TCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTG
CAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACAT
GGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGC
TGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTG
CTGTGCTGCTAGCTTTGGCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCCTATATTTATTGT
AAATATGTCAGGGTACATTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTTTTCAATTTGAGG
TTTCCTTCCTGGCATATGGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGACAATATTTATGA
TGTGGGATGCCAATGTTACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGGTAATTTAATGAA
GTTCAACCTGTGGACAAGGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCAATGTGAACAACTTCCTACAGTCTTACATTATATTATATTGTTCAGTTCCTGAAAGCTAGA
TAAATAGCCTTCTCCAATAAATTGGTTGTTTTGTGGTCTTCGGCAAGTGAAGGTCAACACCTGTAGCAACGTGCTGGGTATGAACTGCATTTCTATGACCTAGTTTGACATCACAAGATATTCGGAGCTGGTTAAGAATCCCTATTCTTAAAATGGTAGTGTGATTTTCATTAACGTCATGTATCTTTAAGAAACAGTTA
ATC
>TRINITY_DN43118_c0_g1_i4 from sample A6 / Example unspliced isoform:AGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGG
GTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAG
CAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAAC
ATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGTACTAGTCGCTTCATTCATTCTCTTCTTTCTGCCCCTCCTTTACATCGACTCATTTCTGGGCCACATGTTGCTTGGTCGGTCAGAAGTTCATTTgtaatacacaatgctcagcatgttttcattcataaaatttagtgttt
gagctcttgggagtggcagttgcataacatttctttatctttcagctacagactacatagagatttatttcatgttgtttttagtcacatcggatgattaatttgagggtttcaactttcatggtgtgatctagGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTA
GATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACT
CCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAG
AGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTT
CGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGC
AAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATG
GCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCT
GTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTGC
TGTGCTGCTAGCTTTGGCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCCTATATTTATTGTA
AATATGTCAGGGTACATTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTTTTCAATTTGAGGT
TTCCTTCCTGGCATATGGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGACAATATTTATGAT
GTGGGATGCCAATGTTACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGGTAATTTAATGAAG
TTCAACCTGTGGACAAGGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCAATGTGAACAACTTCCTACAGTCTTACATTATATTATATTGTTCAGTTCCTGAAAGCTAGAT
AAATAGCCTTCTCCAATAAATTGGTTGTTTTGTGGTCTTCGGCAAGTGAAGGTCAACACCTGTAGCAACGTGCTGGGTATGAACTGCATTTCTATGACCTAGTTTGACATCACAAGATATTCGGAGCTGGTTAAGAATCCCTATTCTTAAAATGGTAGTGTGATTTTCATTAACGTCATGTATCTTTAAGAAACAGTTAA
TC
Intron 6 GTGCGGATCT ... TTCATCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.31 | 3 | 10 | 13 |
| A2 | 79.49 | 8 | 27 | 35 |
| A3 | 79.07 | 9 | 31 | 37 |
| A4 | 96.26 | 2 | 42 | 61 |
| A5 | 82.86 | 3 | 13 | 16 |
| A6 | 80.95 | 2 | 4 | 13 |
| A7 | 70.27 | 11 | 24 | 28 |
| A8 | 76.47 | 2 | 4 | 9 |
| A9 | 96.3 | 1 | 27 | 25 |
| A10 | 74.68 | 10 | 27 | 32 |
>TRINITY_DN46486_c0_g1_i5 from sample A7 / Example spliced isoformGTTCATTTGGGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTC
AGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTT
GAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACA
AACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTC
ATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGA
GCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGG
TGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTG
CTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTC
AGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGA
CCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAG
CTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATT
CTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTGCTGTGCTGCTAGCTTTGGCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGA
ACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCCTATTTTTATTGTAAATATGTCAGGGTACATTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAA
GGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTTTTCAATTTGAGGTTTCCTTCCTGGCATATGGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCA
GCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGACAATATTTATGATGTGGGATGCCAATGTTACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTAC
TATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGGTAATTTAATGAAGTTCAACCTGTGGACAAGGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTA
AAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCAATGTGAACAACTTCCTACAGTCTTACATTATATTATATTGTTCAGTTCCTGAAAGCTAGATAAATAGCCTTCCC
>TRINITY_DN46486_c0_g1_i3 from sample A7 / Example unspliced isoform:GTTCATTTGGGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGgtgcggatctcttcttcacccttgcgttcaattcagt
gttgataataacaacatcttattccaatctggcatatgcattattcatcacagAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGA
ATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATG
AAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCT
TACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGAT
CGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGCAACCTTCTTGATATCCAGGCAACTCATTGGAAAGGACACATGTTTTGCCATTGGCCTTTATACAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGG
ATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAA
GGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTG
GGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAG
ATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTG
TCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGG
AACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTG
GACATCAATCA
Intron 7 GCAACTCATT ... CTTTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 16 | 4 | 5.1 |
| A2 | 15.59 | 10 | 1.9 | 4.3 |
| A3 | 45.45 | 12 | 10 | 3.7 |
| A4 | 22.22 | 7 | 2 | 3.4 |
| A5 | 36.36 | 7 | 4 | 2 |
| A6 | 17.65 | 14 | 3 | 2.6 |
| A7 | 34.76 | 26 | 13.9 | 15.1 |
| A8 | 34.93 | 14 | 7.6 | 3.4 |
| A9 | 28.83 | 19 | 7.7 | 9.4 |
| A10 | 23.16 | 25 | 7.6 | 8.6 |
>TRINITY_DN99124_c0_g1_i5 from sample A3 / Example spliced isoformGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGTGTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTA
TTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTT
TCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATC
ATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCT
TCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAG
ATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAG
TCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTA
CATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATG
GGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCA
GAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAAC
CCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAAT
TGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTGCTGTGCTGCTAGCTTTGGCTATAAATGATTCATCC
CATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCCTATTTTTATTGTAAATATGTCAGGGTACATTCAAACCTGCCATAAAA
TCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTTTTCAATTTGAGGTTTCCTTCCTGGCATATGGTTCTGCAGTTGTACTA
GTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGACAATATTTATGATGTGGGATGCCAATGTTACTCTTTGGACATGTCAA
GAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGGTAATTTAATGAAGTTCAACCTGTGGACAAGGACCTGAGAGAAGCCAC
GCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCA
>TRINITY_DN99124_c0_g1_i1 from sample A3 / Example unspliced isoform:GAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGTGTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTA
TTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTT
TCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATC
ATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCT
TCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAG
ATGAAGTCAGAGAGCAGgcaactcattggaaaggacacatgttttgccattggcctttatacagGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGC
TAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCT
AGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACC
AAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAAC
TTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAG
CTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAA
CAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGG
AGAATGCTGCTGCTGTGCTGCTAGCTTTGGCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCC
TATTTTTATTGTAAATATGTCAGGGTACATTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTT
TTCAATTTGAGGTTTCCTTCCTGGCATATGGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGA
CAATATTTATGATGTGGGATGCCAATGTTACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGG
TAATTTAATGAAGTTCAACCTGTGGACAAGGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCA
Intron 8 GCAACCTTCT ... CTTTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.81 | 16 | 4 | 6 |
| A2 | 25.93 | 10 | 2 | 5 |
| A3 | 36.84 | 12 | 10 | 4 |
| A4 | 30 | 7 | 2 | 4 |
| A5 | 30 | 7 | 4 | 2 |
| A6 | 17.65 | 14 | 3 | 3 |
| A7 | 44.09 | 26 | 19 | 22 |
| A8 | 26.32 | 14 | 6 | 4 |
| A9 | 35.59 | 19 | 9 | 12 |
| A10 | 23.08 | 25 | 5 | 10 |
>TRINITY_DN46486_c0_g1_i11 from sample A7 / Example spliced isoformGTTCATTTGGGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGG
AGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACC
TGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGA
ATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCAT
GATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGATCGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGA
GCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGA
ACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATT
CAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAA
AGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCAC
TTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTG
CTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCA
AAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTGCTGTGCTGCTAGCTTTGGCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATATGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGA
GAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCCTATTTTTATTGTAAATATGTCAGGGTACATTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGGAAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCA
CAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTTTTCAATTTGAGGTTTCCTTCCTGGCATATGGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAACTGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACC
TAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGACAATATTTATGATGTGGGATGCCAATGTTACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGTTTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAA
CTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGGTAATTTAATGAAGTTCAACCTGTGGACAAGGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGCATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCC
TTTTCAATTTCATCACTGATTGGTCAATGTGAACAACTTCCTACAGTCTTACATTATATTATATTGTTCAGTTCCTGAAAGCTAGATAAATAGCCTTCCC
>TRINITY_DN46486_c0_g1_i3 from sample A7 / Example unspliced isoform:GTTCATTTGGGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGT
GTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTATTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGA
ATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATG
AAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCT
TACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCTTTGGACGGTGAAGCAATTTCTGGTAGATTCCATGCACTGACTGAAGAACTAGAT
CGTATTCTAGATGGCATGCCATATGATTTATTAGAGATTTCAGATGAAGTCAGAGAGCAGgcaaccttcttgatatccaggcaactcattggaaaggacacatgttttgccattggcctttatacagGTAGAACTGATGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGG
ATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAA
GGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTG
GGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAG
ATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTG
TCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGG
AACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTG
GACATCAATCA
Intron 9 GCTTTGGACG ... CAGAGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.09 | 3.5 | 17 | 4 |
| A2 | 60.79 | 5.5 | 15 | 2 |
| A3 | 92 | 1 | 13 | 10 |
| A4 | 60.5 | 8.5 | 24 | 2 |
| A5 | 85.72 | 1 | 6 | 4 |
| A6 | 55.3 | 8.5 | 18 | 3 |
| A7 | 67.31 | 11.5 | 30 | 16.5 |
| A8 | 80.19 | 2.5 | 13 | 7 |
| A9 | 60.39 | 12.5 | 29 | 8.5 |
| A10 | 77.22 | 4.5 | 23 | 6.5 |
>TRINITY_DN46486_c0_g1_i10 from sample A7 / Example spliced isoformGTTCATTTGGGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGGTGCGGATCTCTTCTTCACCCTTGCGTTCAATTCAGT
GTTGATAATAACAACATCTTATTCCAATCTGGCATATGCATTATTCATCACAGAGCTGGTTGTTGTTGCTTTCTCGGATCTGTAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGGAGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGA
ATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACCTGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATG
AAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGAATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCT
TACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCATGATGGCAGCAAACTGTACCTGGCAACTCATTGGAAAGGACACATGTTTTGCCATTGGCCTTTATACAGGTAGAACTGA
TGCACATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAA
GAAAAGGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGAT
GAAAGATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTC
CAAGTCGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTG
AAGCTGTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGA
GAACAAGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGG
TTGATGAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAACCATTCATATTCTTGTCAAGCTCATTTATTTAGGCTCTGCTCACAATAAGGAGAATGCTCTTGCAATTTTTGTTTAAAAGCCAACCCGGCCACACTTTTCCGC
>TRINITY_DN46486_c0_g1_i4 from sample A7 / Example unspliced isoform:GTTCATTTGGGCTAAACATTTTTTTTAGATAAATGGGGAAATTGAAAAAAATGAAAAGAAAACTCCTCTTATTTGCTATGAAAGCCTATTGCAGCGATGGAAAGTGCTGATGGGCAGCGGAGCAGAGTTAGCGAGCATTCGTTGCCTGAACATGTGCAGCAAGAGTTCAGCGAAGATTAAGATACTTATTCAAGAGAGGG
AGGGACCGACAGAATTCATTATACTGAATCAGGGCAGCAGTATGCCTTTCTTGTTTCTTCAGAATCATGGTGTGTAGAATCAGACAAATGGGTACAAGTTTGGAGGCCATACAAGCCTGTTTCTGCATTATGGGGCACCGGTTTCGCCTTACGATTTAGATGGGTTTTGAAAGTAAGATTTTGGGTATAGAAAAAGAACC
TGGAGGATTCTCTATGGATCAAGGTACCCAAGACCCCAACTGCTGTACTGTGGGGTTTTCAATGCGAGTTTATAAATGAAATTGTGGGGGTTGATTGATTGACCTGTTATGTTTGGTAATCATAAGTAGAAGCAGAGCAGACAACATGTCAGAGGGTGGTAAGCAACAAACCTTAGTCGAGTCTCTGGGAAATGCAGTGA
ATGCAATGGCATTGAGCAGGGACTACAGAAAAAGCCAGAAGAAGGATTGTTTCGACCTCGTAAGGAGGATTAAACTCTTACTTCCATTGTTTGAAGAACTTAGGGAATTGGATGGACCTCTTCCTCGGGTGGCAGTGGAGTGCTTTTCTTCGCTGCGAAAAACATTTCATTCTGCGAAAAGACTGCTTCAACTCTGCCAT
GATGGCAGCAAACTGTACCTGgctttggacggtgaagcaatttctggtagattccatgcactgactgaagaactagatcgtattctagatggcatgccatatgatttattagagatttcagatgaagtcagagagcagGCAACTCATTGGAAAGGACACATGTTTTGCCATTGGCCTTTATACAGGTAGAACTGATGCAC
ATACAGTTAAAGAGAGCAAAGGGAAGGGCTAATACTCAGGATGTTGAGCTCTCCATGGATATCATGATAGCACTTTCTCAAAAGGATGGCAGGAACGCCGACATTGCCATCCTGGAAAGGCTAGCAGTCAAACTCCAGCTTCAAACTGTTTCAGAATTGAATATGGAGTCAAGGGCAGTGAAGAAACTCATTAAAGAAAA
GGGTGAAGAAATGGGTGAGATTACTGAGCAGATCATTTATCTTCTGAACAAGCTGAAAGGCATGCTGCAAATGCAAATTTTTGAGGAGAATAGGGTTGGTTTTGAAAATCTTGTTTTGTCTAGAAACCCATCAGAGAAAATAAACTCTCCTGTTATTCCCGAGGACTACATTTGTCCAATTTCATTGGACCTGATGAAAG
ATCCTGTTATTGTTGCTACAGGACAGACCTATGAGCGATCATGCATTCAGAAATGGTGGGATTCAGGACATAAAACTTGTCCCAAGACTCAGCAAGTTTTGCTTCACTTAACACTAACACCAAATTATGCTCTTCGCAGCTTAATTTCTCAATGGTGTGAAACCAATGGGGTTGAGTTACCGAGAAAACTAGGTCCAAGT
CGGACAACAAGACTCAGTAAAAGTTCAGATTTTTCTTTTGGAGAAAAAGCAAATATAGATGTTTTGGTTCAAAATCTCTCTTGCCAGCAAGTTGATGTGCAAAGAGCTGCTGCTGGAGAACTTCGATTGCTTGCAAAGAGAAATGCAGATAACAGGATTTTTATTGCAGAGGCTGGAGCTGTGCCTCCATTGGTGAAGCT
GTTATCCTCCACTGACCCAAAGACCCAGGAGCATGCCGTTACTGCACTTCTAAACTTGTCTATTCATGAAAGGAATAAGGGCATGATTGTTCAACTAGGAGCTATCCACCCTGTTACAGAGCTGCTAAAACATGGCAGTATGGAGGCAAGGGAAAATTCTGCAGCAACCCTGTTTAGCTTGTCTGTAATAGATGAGAACA
AGGTCAAAATTGGAGCTTCAGGAGCTATCTCGGCTTTGGTCGATCTGCTTCGTGATGGAACTATAAGAGGGAAAAAGGATGCTGCAACTGCTCTTTTTAATTTGTCTATGTGTCAAGCAAACAAAGCCAGGGCTGTCAGAGCTGGGGTTGTGCCACTGCTATTGGAATTGCTTATTGACGAAATCACAGGAATGGTTGAT
GAAGCTCTTGCAATTCTTTCTATACTTGCTACTCATCAGGATGGTCAAAGTGCAATTGGACATCAATCAGCTATTCATATTCTTGTCAATCTCATTTGTTCAGGCTCTGCTCGCAATAAGGAGAATGCTGCTGCTGTGCTGCTAGCTTTGGCTATAAATGATTCATCCCATCTATTGACGGGACTGCAGTTTGGTGTATA
TGGGCCTTTGATTGAACTTACTCATAATGGAACTAGTAGAGCGAAGAGAAAGGCTAAAGCACTTTTAGAGCTCATGAGCAAGCATGAACAGATTTCTAAAAGCACCTGCTAAGAACTGTCCTATTTTTATTGTAAATATGTCAGGGTACATTCAAACCTGCCATAAAATCAGAGGGTACATTTTCTTTTGTAGGCAAAGG
AAGCAAAGTTACGAAGGGAAAGTAAGTTATGGTTTCAAACCCTCTCACAACTTTCTGCTTTCCAAGCCTAGGAGAGCTATGCACCCAACTTCCAAGATTCTCATCTGACTTTCAACTGGTTTTCAATTTGAGGTTTCCTTCCTGGCATATGGTTCTGCAGTTGTACTAGTACTCAAAACGTTTGTTGCTGCAAGCACAAC
TGTAGTGTGTTTGCAGCTTTTAACATGACTTGGACCCACAACTAACCTAACTGGACCATTTTCATGGTTACCTTACACATCTGTTCGTATACTAAAAATTGTGTATACTGAATGGTGTTGACAATATTTATGATGTGGGATGCCAATGTTACTCTTTGGACATGTCAAGAATTTAGGCTAGTGGGATTGGTAGTATAAGT
TTTTCAGAGGATTACTATCTGCTGCTCTAGACACAATGCATTGACAACTTGGCACTGGGTGGTAGGTGAAGTCTGCCTCTGTGTGTCTGTACTAGATCAGGAATGGGAAGGATAGTTATGGTAATTTAATGAAGTTCAACCTGTGGACAAGGACCTGAGAGAAGCCACGCTGCATTATCAAGTTTATCTCTAATAAAGGC
ATTGCTTTTCTTCTAAAGTTCTTTGGATGTCTACACTTTATTCTTCCTTTTCAATTTCATCACTGATTGGTCAATGTGAACAACTTCCTACAGTCTTACATTATATTATATTGTTCAGTTCCTGAAAGCTAGATAAATAGCCTTCCC