sp|Q9SZA4|CDC21_ARATH ----> Cell division cycle 20.1, cofactor of APC complex

Intron 1 GTATTTATGA ... GTTACTGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	51.22	10	15	6
A2	18.64	24	4	7
A3	54.55	5	9	3
A4	52.38	5	9	2
A5	20	6	1	2
A6	47.75	29	31	22
A7	35.29	55	29	31
A8	36.73	93	48	60
A9	48.31	23	29	14
A10	33.9	39	18	22

>TRINITY_DN42362_c0_g1_i6 from sample A10 / Example spliced isoform

CTGTGGCTTAAGTTTGAGAGGCTTTGTACTGTTGTATTTAAAAGGTGGTTGTAATTAAAGAATTTTCATATAAATTGCTAACCCCTTTTCATGGTGTTACTATTGTTTATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTT
ATGATACATAATATCAGCAGTGGTTCCATGCTGACATTTCTGATATGTTGTATTTAACTGTGGCTTAAGTTTGAGAGATTTTGCAGGTTTTGTATTGAACTCGTGGAGTTGCATTTTCAACGTGATAAATTTTCAGGTGGTTGTATTCCAAGGTGGAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAATGGTTTCA
AGAACTTTAATATCCACTCAGAAAGTTACTTTAATATGCTGATAGTTACTGAAGGTGAAGAAACAAATTTGCCTGTTGTTTCCAATATGCTGATAGTTACTGAAGGTAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAGACAGTTACTTTAATAT
GCTGATAGTTACTGAAGGTAAAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAGTGGTTCAAGAACTTTAATATCCACTCAGAAAGTTACTTTAATATGCTGATAGTTACTGAAGGTGAAGAAACAAATTTGCCTGAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGATT
GTTTCCGCTTCATTCA

>TRINITY_DN42362_c0_g1_i2 from sample A10 / Example unspliced isoform:

GCCTGTTGTTTCCGCTTCATTCAGTGGTATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGgtatttatgatacataatatcagcagtggttccatgctgatagttactgaaggtatttatgatacataatatcagcagtggttccatgctgacatttctgatatgttgtatttaactgtggcttaagtttgagagatt
ttgcaggttttgtattgaactcgtggagttgcattttcaacgtgataaattttcaggtggttgtattccaaggtggagaaacaaatttgcctgttgtttccgcttcattcaatggtttcaagaactttaatatccactcagaaagttactttaatatgctgatagttactgaagGTGAAGAAACAAATTTGCCTGAATAT
GCTGATAGTTACTGAAGGTAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAGACAGTTACTTTAATATGCTGATAGTTACTGAAGGTAAAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAGTGGTTCAAGAACTTTAATATCCACTCAGAAA
GTTACTTTAATATGCTGATAGTTACTGAAGGTAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGAGCTTCATTCA

Intron 2 ATTTGCCTGA ... GAAGAAACAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	47.22	19	17	0
A2	54.76	19	23	0
A3	59.38	13	19	0
A4	32.26	21	10	0
A5	71.43	2	5	0
A6	20	48	12	0
A7	30.94	96	43	0
A8	30.38	165	72	0
A9	33.33	60	30	0
A10	33.33	52	26	0

>TRINITY_DN42362_c0_g1_i3 from sample A10 / Example spliced isoform

TATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGACATTTCTGATATGTTGTATTTAACTGTGGCTTAAGTTTGAGAGATTTTGCAGGTTTTGTATTGAACTCGTGGA
GTTGCATTTTCAACGTGATAAATTTTCAGGTGGTTGTATTCCAAGGTGGAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAAAAAATTACAGAAAGTTACTTTAATATGCTGATAGTTACTGAAGGTGAAGAAACAAATTTGCCTGTTGTTTCCAATATGCTGATAGT
TACTGAAGGTAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAGACAGTTACTTTAATATGCTGATAGTTACTGAAGGTAAAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAGTGGTTCAAGAACTTTAATATCCACTCAGAAAGTTACTTTA
ATATGCTGATAGTTACTGAAGGTGAAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCA

>TRINITY_DN42362_c0_g1_i1 from sample A10 / Example unspliced isoform:

TATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGACATTTCTGATATGTTGTATTTAACTGTGGCTTAAGTTTGAGAGATTTTGCAGGTTTTGTATTGAACTCGTGGA
GTTGCATTTTCAACGTGATAAATTTTCAGGTGGTTGTATTCCAAGGTGGAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAGAAAGTTACTTTAATATGCTGATAGTTACTGAAGGTGAAGAAACAAATTTGCCTGTTGTTTCCTCTCCATTCAATGGTTTCAAGAAC
TTTGATATCCACTCAGAAAGTTACTTTAATATGCTGATAGTTACTGAAGGTAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAGACAGTTACTTTAATATGCTGATAGTTACTGAAGGTAAAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCA
GTGGTTCAAGAACTTTAATATCCACTCAGAAAGTTACTTTAATATGCTGATAGTTACTGAAGGTGAAGAAACAAatttgcctgaaactctggtgaagaaacacATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGATTGTTTCCTCTTCGTTCAACAAGAACTTTTAATATTCACTCATAAAGTGCAAAATATG
AGAGAGAGATGTCGAAGTGGGAAATTGAGTTTTCTGTACAGCTTAGTGGGCTTACTTATCCAGAATATGGCTTCTATCTTTAGTCAAGCTTTTGCAAGGATAGAGGAGATGATTCAGATTTCTCAGAATCTGAAATGTTTTTAATTGATGTGTCCGGGGCCGAGCAACTCTGCAAGAATTTAGTTAGGCCTAAGTTGAAA
ATTTTCTGATGATAATAAACACGGTCAACAGTTGCTTTGTTCTAATATAATATTCTGCACTTTGTTAGCTGACATGATAATAAAGTATAACAGCTTTGTTCTAGTATAACATTGGCTTGATTGATCCGTATGTCACTCTGATGTATTTTCATCAATGATATTTGACGCTTCATTCA

Intron 3 GTGAAGAAAC ... GTTACTGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	38.46	4	2	3
A2	51.72	7	8	7
A3	0	2	0	0
A4	41.18	5	2	5
A5	100	0	2	0
A6	49.4	21	21	20
A7	45.1	28	25	21
A8	41.44	53	45	30
A9	46.34	11	13	6
A10	43.86	16	14	11

>TRINITY_DN42362_c0_g1_i2 from sample A10 / Example spliced isoform

GCCTGTTGTTTCCGCTTCATTCAGTGGTATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGACATTTCTGATATGTTGTATTTAACTGTGGCTTAAGTTTGAGAGATT
TTGCAGGTTTTGTATTGAACTCGTGGAGTTGCATTTTCAACGTGATAAATTTTCAGGTGGTTGTATTCCAAGGTGGAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAGAAAGTTACTTTAATATGCTGATAGTTACTGAAGGTGAAGAAACAAATTTGCCTGAATAT
GCTGATAGTTACTGAAGGTAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAGACAGTTACTTTAATATGCTGATAGTTACTGAAGGTAAAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAGTGGTTCAAGAACTTTAATATCCACTCAGAAA
GTTACTTTAATATGCTGATAGTTACTGAAGGTAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGAGCTTCATTCA

>TRINITY_DN42362_c0_g1_i3 from sample A10 / Example unspliced isoform:

TATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGATAGTTACTGAAGGTATTTATGATACATAATATCAGCAGTGGTTCCATGCTGACATTTCTGATATGTTGTATTTAACTGTGGCTTAAGTTTGAGAGATTTTGCAGGTTTTGTATTGAACTCGTGGA
GTTGCATTTTCAACGTGATAAATTTTCAGGTGGTTGTATTCCAAGGTGGAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAAAAAATTACAGAAAGTTACTTTAATATGCTGATAGTTACTGAAGgtgaagaaacaaatttgcctgttgtttccaatatgctgatagt
tactgaagGTAAACTCTGGTGAAGAAACACATTTGCCTGTTGTTTGCGCTTCATTCAATGGTTTCAAGAACTTTAATATCCACTCAGACAGTTACTTTAATATGCTGATAGTTACTGAAGGTAAAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCAGTGGTTCAAGAACTTTAATATCCACTCAGAAAGTTACTTTA
ATATGCTGATAGTTACTGAAGGTGAAGAAACAAATTTGCCTGTTGTTTCCGCTTCATTCA