sp|O64884|OFT20_ARATH ----> O-fucosyltransferase 20
Intron 1 GTAATTAAGT ... TGTGTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.51 | 13.1 | 2.3 | 6.6 |
| A2 | 40.49 | 13.4 | 1 | 9 |
| A3 | 39.51 | 49 | 1.9 | 32 |
| A4 | 28.3 | 17.8 | 1.6 | 7 |
| A5 | 45 | 11 | 0 | 9 |
| A6 | 38.41 | 40.5 | 4.9 | 25.3 |
| A7 | 36.76 | 85.4 | 7.5 | 49.6 |
| A8 | 33.43 | 55.8 | 3.3 | 28 |
| A9 | 35.12 | 86.9 | 4.9 | 47 |
| A10 | 30.09 | 90.6 | 0.6 | 39 |
>TRINITY_DN44727_c2_g4_i1 from sample A6 / Example spliced isoformGCATGCATACACTTCCCAAGAGATTCTACTTAAAGAACATATAGCAGAGATCTACGTGTCTGGTACAGCTTCCGTTGAAACAACGCCTTTTGTAGCTGCCATTGTTTGTGATTCGTTACAAGAATTGGAGAGAGACCATTAGCTCAGGCACATCGCCGCCGACATTGCAGGAGTTTCCAAAACGCAGAATCATGTTTTTC
TTTATTAGGAACTGCCAAAATGGAAGAAGCCCCGCCCCTTCATTTGACTGATTTCTCATTGCTTTTCAAATCTGTGCTCCCAAGCAGGCTTGCTGCAACGATCATGAATTCTTGCAAAAGTCTGGCCGGAATACCCATCACTGCAACTGAAAAGAAACTCAGAAAGAAGCCCAGCTGGATTAAGAAGTTTTTGCAAACAT
AATCATCGATCGAGAATCACACCAAAAAGTATTTATAAATTCCCAGGGAAATGATAACTTCTGATCTTGCGACGTCTGTGAAAGGTCATCTCATGCGGCCCAGGAAAGGCCTCACACAAGCACTTCGCAATTTATTTATTTTTCTGATCGCTCTCCTGGCGTTTTGTGCTTGCCTTACCACACTTCGAATCGTTTCTACT
TGGCAATCCGCCAACACGTTCACAGATTCTCGTCGCAGCTTGCCACCTTCCACGGCTCTACTTGCAGAAGCGCCGTCATCTGATCTCCTAATTCGGCATGATTTATCGCCGAACGTAACAGAGGACGATAAACGTTTCTGGGCTCAGCCAGATAATTTGGGGTACAAGCCGTGTATTGAGTTCAGTATTGAGTACAGGCA
GGCGTCGCTGGGCATTGTGAAGAGAAGGCGCAGGTATTTGATGGTGGTCGTCTCGGGTGGTCTCAATCAGCAGCGCAATCAGATTGTTGACGCGGTTGTCATTGCCAGAATTCTGGAGACAGCTTTGGTTATTCCCGTTCTGCAATTCAATCAAATTTGGGAGGACGACAGTGAATTCTCTGATATCTTCGACGTCGACC
ATTTCAAGAAAACTCTTAAAGACGACGTCACAATCCTTTCTTCGCTGCCTTCCACTCATTTGACGTCGAGGCCAGTGGAGGAGAAGATAAATAATCTCCACGTTAGCCCCAGCTGGTTTCGATCTCGCTACCTCACGCGGTTGAACAAAGAAATTCTGGTTCTTCGAAAATTGGATTCGAGACTTTCCAAGAATCTTCCT
TCCGATCTTCAAAAGCTCCGTTGCAAGGTCGCCTTCCACGCCTTACGATTTGCAGCACCAATTCAAGAACTGGGGAACAGGCTGGCGAAAAGAATGTCGAAAAAGGGTCCTTACATAGCTCTTCATTTACGGCTGGAGAAAGATGTGTGGGTTAGAACCGGATGCCTTCCCAGCTTGGGTCCAGAATACGACCAAATAAT
CCAACAGGAGCGCAGAAGCCATCCAGATTTCCTCACGTCACGATCCAACATGACTTACACAGAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCGCCAGGCTTCTTAAAGCCCTGGGAGCGCCGAAAAACAGCCTCATATACTGGGCAGGCGGGGAACCGTTAGGAGGAAAGAAGGCGGTGGAGCCTC
TGATCAAACACTTCCCAAATCTTTACAACAAGCAGAGCCTGGCCTTGCCAGGCGAGCTCGAACCTTTGAACAACAGAGCATCGCTTCTTGCTGCAATCGATTACATTGTGGCACTAAACAGCGATGTTTTCATGGCGTCACATGGAGGAAACATGGGCCGTGTGATTCAGGGCCACAGGGCATACGCAGGCCACAAAAAG
CACATAACTCCCAACAAAAAACAGATGCTCCCTCGCTTCCTTGACAAAACATTGGGTGAAGAAGATTTTAACAAGATTGTTAGACATCTGCATAACAACTCTGTGGGGCAACCGGTATTCAGAACGAAGAAAGCAGGACGCGATGTGGTGGCTTACCCTGTTCCCGAGTGCATGTGCACAAACCAGAACAGGACTAGGAC
CACAAGCAGTCCTGTCCCTTCCACATGGTAGCTTTCTTTAACTGCGCCACGAATTTAATTGCAAGTGGTCAAGGCAGCCATCCGAAGTTCGACTGAAGATTTGCAAAACGGTGGATAATTTAAACGTCTGCTCCTAAAATATTTAGGTATGAGCAGATCAGTAGAATATTGCCGGAGACCACAATTTTTTGGTGTTATCG
ACGCCAGTAAGAGGCAGAGTTGTTGTTTGAATAATCTGCAAACTGTTGAACAAGCCCTACCGGGCTCCTGAACAGATTTACGGTGGGGACTCAATCTGTTTTCCATGAAACCCGTCCCGGTCATCAGGACCCAGACGGCCTCCAAAAGTCAGCACTTCATTTCATTTTTTTCAAATTTTTTTACGCTGACCCTGATATTC
ACCCCTGTGAATCAAGGGTAGCACTTCATTTCATTTATGTATACAAAATCCTCTAAAGGGATCGAAGACCAATTCCAATCCTCGTCTAGCACATCGATGTCAAGATTAAATTTTATGAAAAATCAGCCCTTGCCATTCATGTGCAACTTACATAATAAAAATCGCTAAAGAGAAGGTTTGCTTTTGGTTTAATGAAATGA
AAAAGAGAAATGAAGAGAAGTTTTGCTTTTGGTTTTAATGAAATGAAAAAGAGAAATGAAAAGAGAAGTTTTGTTTTTGGTTTTAATGAAATGAAAAAGAGAAATGAAAAGAGAAGTTTTGTTTTTGGTTTTAATGAAATGAAAA
>TRINITY_DN44727_c2_g4_i2 from sample A6 / Example unspliced isoform:GTAATTTGTTTATAATATGCGCCCATGCCGTCACCTTCATTTATTTAGCGTTCTATGCAGATTTTGACTATGTCTTTTATGCAGTGAATTCTCTGATATCTTCGACGTCGACCATTTCAAGAAAACTCTTAAAGACGACGTCACAATCCTTTCTTCGCTGCCTTCCACTCATTTGACGTCGAGGCCAGTGGAGGAGAAGA
TAAATAATCTCCACGTTAGCCCCAGCTGGTTTCGATCTCGCTACCTCACGCGGGTGAGCGCGTAATTTATTCAAATTCCACGAATCTCATCTTTTGCATAGTGCGTTTAGAATTTCCCAATTTAAATTAATGACTGTTGAGCATGATCTATATTCGATGGCAGTTGAACAAAGAAATTCTGGTTCTTCGAAAATTGGATT
CGAGACTTTCCAAGAATCTTCCTTCCGATCTTCAAAAGCTCCGTTGCAAGgtaattaagttggcaatagacgacagacggtttcttaatacagtactatagtttaatgtttgtgttccagGTCGCCTTCCACGCCTTACGATTTGCAGCACCAATTCAAGAACTGGGGAACAGGCTGGCGAAAAGAATGTCGAAAAAGGG
TCCTTACATAGCTCTTCATTTACGGCTGGAGAAAGATGTGTGGGTTAGAACCGGATGCCTTCCCAGCTTGGGTCCAGAATACGACCAAATAATCCAACAGGAGCGCAGAAGCCATCCAGATTTCCTCACGTCACGATCCAACATGACTTACACAGAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCG
CCAGGCTTCTTAAAGCCCTGGGAGCGCCGAAAAACAGCCTCATATACTGGGCAGGCGGGGAACCGTTAGGAGGAAAGAAGGCGGTGGAGCCTCTGATCAAACACTTCCCAAATCTTTACAACAAGCAGAGCCTGGCCTTGCCAGGCGAGCTCGAACCTTTGAACAACAGAGCATCGCTTCTTGCTGCAATCGATTACATT
GTGGCACTAAACAGCGATGTTTTCATGGCGTCACATGGAGGAAACATGGGCCGTGTGATTCAGGGCCACAGGGCATACGCAGGCCACAAAAAGCACATAACTCCCAACAAAAAACAGATGCTCCCTCGCTTCCTTGACAAAACATTGGGTGAAGAAGATTTTAACAAGATTGTTAGACATCTGCATAACAACTCTGTGGG
GCAACCGGTATTCAGAACGAAGAAAGCAGGACGCGATGTGGTGGCTTACCCTGTTCCCGAGTGCATGTGCACAAACCAGAACAGGACTAGGACCACAAGCAGTCCTGTCCCTTCCACATGGTAGCTTTCTTTAACTGCGCCACGAATTTAATTGCAAGTGGTCAAGGCAGCCATCCGAAGTTCGACTGAAGATTTGCAAA
ACGGTGGATAATTTAAACGTCTGCTCCTAAAATATTTAGGTATGAGCAGATCAGTAGAATATTGCCGGAGACCACAATTTTTTGGTGTTATCGACGCCAGTAAGAGGCAGAGTTGTTGTTTGAATAATCTGCAAACTGTTGAACAAGCCCTACCGGGCTCCTGAACAGATTTACGGTGGGGACTCAATCTGTTTTCCATG
AAACCCGTCCCGGTCATCAGGACCCAGACGGCCTCCAAAAGTCAGCACTTCATTTCATTTTTTTCAAATTTTTTTACGCTGACCCTGATATTCACCCCTGTGAATCAAGGGTAGCACTTCATTTCATTTATGTATACAAAATCCTCTAAAGGGATCGAAGACCAATTCCAATCCTCGTCTAGCACATCGATGTCAAGATT
AAATTTTATGAAAAATCAGCCCTTGCCATTCATGTGCAACTTACATAATAAAAATCGCTAAAGAGAAG
Intron 2 GTTATTTTCT ... CTTGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.45 | 61 | 31.1 | 32.7 |
| A2 | 47.2 | 33.1 | 23.8 | 35.4 |
| A3 | 30.99 | 57.5 | 19 | 32.4 |
| A4 | 29.85 | 31.1 | 11.8 | 14.7 |
| A5 | 32.96 | 21.4 | 11 | 10 |
| A6 | 11.58 | 90.5 | 5.6 | 18 |
| A7 | 12.3 | 149.9 | 17.2 | 24.9 |
| A8 | 15.92 | 117.4 | 18 | 26.4 |
| A9 | 16.51 | 151.3 | 21.8 | 37.6 |
| A10 | 12.49 | 136.6 | 12.4 | 27 |
>TRINITY_DN118502_c1_g3_i7 from sample A2 / Example spliced isoformATTGTAAAATAGCATGCATACACTTCCCAAGAGATTCTACTTAAAGAACATATAGCAGAGATCTACGTGTCTGGTACAGCTTCCGTTGAAACAACGCCTTTTGTAGCTGCCATTGTTTGTGATTCGTTACAAGAATTGGAGAGAGACCATTAGCTCAGGCACATCGCCGCCGACATTGCAGGAGTTTCCAAAACGCAGAA
TCATGTTTTTCTTTATTAGGAACTGCCAAAATGGAAGAAGCCCCGCCCCTTCATTTGACTGATTTCTCATTGCTTTTCAAATCTGTGCTCCCAAGCAGGCTTGCTGCAACGATCATGAATTCTTGCAAAAGTCTGGCCGGAATACCCATCACTGCAACTGAAAAGAAACTCAGAAAGAAGCTGAGCTGGATTAATAAGTT
TTTGCAAACATAATCATCGATCGAGAATCACACCAAAAAGTATTTATAAATTCCCAGGGAAATGATAACTTCTGATCTTGCGACGTCTGTGAAAGGTCATCTCATGCGGCCCAGGAAAGGCCTCACACAAGCACTTCGCAATTTATTTATTTTTCTGATCGCTCTCCTGGCGTTTTGTGCTTGCCTTACCACACTTCGAA
TCGTTTCTACTTGGCAATCCGCCAACACGTTCACAGATTCTCGTCGCAGCTTGCCACCTTCCACGGCTCTACTTGCAGAAGCGCCGTCATCTGATCTCCTAATTCGGCATGATTTATCGCCGAACGTAACAGAGGACGATAAACGTTTCTGGGCTCAGCCAGATAATTTGGGGTACAAGCCGTGTATTGAGTTCAGTATT
GAGTACAGGCAGGCGTCGCTGGGCATTGTGAAGAGAAGGCGCAGGTATTTGATGGTGGTCGTCTCGGGTGGTCTCAATCAGCAGCGCAATCAGATTGTTGACGCGGTTGTCATTGCCAGAATTCTGGAGACAGCTTTGGTTATTCCCGTTCTGCAATTCAATCAAATTTGGGAGGACGACAGTGAATTCTCTGATATCTT
CGACGTCGACCATTTCAAGAAAACTCTTAAAGACGACGTCACAATCCTTTCTTCGCTGCCTTCCACTCATTTGACGTCGAGGCCAGTGGAGGAGAAGATAAATAATCTCCACGTTAGCCCCAGCTGGTTTCGATCTCGCTACCTCACGCGGTTGAACAAAGAAATTCTGGTTCTTCGAAAATTGGATTCGAGACTTTCCA
AGGATCTTCCTTCCGATCTTCAAAAGCTCCGTTGCAAGGTCGCCTTCCACGCCTTACGATTTGCAGCACCAATTCAAGAACTGGGGAACAGGCTGGCGAAAAGAATGTCGAAAAAGGGTCCTTACATAGCTCTTCATTTACGGCTGGAGAAAGATGTGTGGGTTAGAACCGGATGCCTTCCCAGCTTGGGTCCAGAATAC
GACCAAATAATCCAACAGGAGCGCAGAAGCCATCCAGATTTCCTCACGTCACGATCCAACATGACTTACACAGAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCGCCAGGCTTCTTAAAGCCCTGGGAGCGCCGAAAAACAGCCTCATATACTGGGCAGGCGGGGAACCGTTAGGAGGAAAGAAGGC
GGTGGAGCCTCTGATCAAACACTTCCCAAATCTTTACAACAAGCAGAGCCTGGCCTTGCCAGGCGAGCTCGAACCTTTGAACAACAGAGCATCGCTTCTTGCTGCAATCGATTACATTGTGGCACTAAACAGCGATGTTTTCATGGCGTCACATGGAGGAAACATGGGCCGTGTGATTCAGGGCCACAGGGCATACGCAG
GCCACAAAAAGCACATAACTCCCAACAAAAAACAGATACTCCCTCGCTTCCTTGACAAAACATTGCCTGAAGAAGATTTTAACAAGATTGTTAGGCATCTGCATAACAACTCTGTGGGGCAACCGGTATTCAGAACGAAGAAAGCAGGGCGTGATGTGGTGGCTTACCCTGTTCCCGAGTGCATGTGCACAAACCAGAAC
AGGACTAGGAGCACAAGCAGTCCTGTCCCTTCCACCTGGTAACTTTCTTTAACTGCGCCACGAATTTAATTGCAAGTGGTCAAGGCAGCCATCAGAAGTTCGACTCAAGATTTGCAAAACGGTGGATAATTTAAACGTCTGGTCCTAAAATATTTAGGTCTGAGCAGATCAGTAGAATATTGCCGGAGACCACAATTTTT
TGGTGTTATCGACGCCAGTAAGAGGCAGAGTTGTTGTTTGAATAATCTACAAACTGTTGCACAAGTTCTTCCCGGCCTTTGAACAGATTTACGGCGGGGCCATCCCTGGAAATACAGCAGCATCAGTCTGTTTTCTCTGGAACCCGTCCCGGTCATACTTCGTTTATGTCTACAAAATACTCTGAAGACCAATTCCAATA
CTCGTCTAGCACATCGATTGTTTTTCGAAAGATATGACTACGTCAAATTAAATTTTATGAAAAATCAGCCCTCGCCACAGAACTGCCTTATTCCTCTCTCAGGTGTAAAGCACAGCAAAACAAACAGAACTCGGGTGCTCCTATTCGTCTTTCAGGGAAGCAGAGCCTAAAATAAGAACGGCAAAAGAAACAGAACTCAG
ACCGTTCAATTATGGAGTTGGCATACATTTGCTACGAAGTCAGAATCCAGAGGATTTACCGCAAAAATCTGAGATTAATCCAAAGGATAATCACGTAT
>TRINITY_DN118502_c1_g3_i1 from sample A2 / Example unspliced isoform:ATTGTAAAATAGCATGCATACACTTCCCAAGAGATTCTACTTAAAGAACATATAGCAGAGATCTACGTGTCTGGTACAGCTTCCGTTGAAACAACGCCTTTTGTAGCTGCCATTGTTTGTGATTCGTTACAAGAATTGGAGAGAGACCATTAGCTCAGGCACATCGCCGCCGACATTGCAGGAGTTTCCAAAACGCAGAA
TCATGTTTTTCTTTATTAGGAACTGCCAAAATGGAAGAAGCCCCGCCCCTTCATTTGACTGATTTCTCATTGCTTTTCAAATCTGTGCTCCCAAGCAGGCTTGCTGCAACGATCATGAATTCTTGCAAAAGTCTGGCCGGAATACCCATCACTGCAACTGAAAAGAAACTCAGAAAGAAGCTGAGCTGGATTAATAAGTT
TTTGCAAACATAATCATCGATCGAGAATCACACCAAAAAGTATTTATAAATTCCCAGGGAAATGATAACTTCTGATCTTGCGACGTCTGTGAAAGGTCATCTCATGCGGCCCAGGAAAGGCCTCACACAAGCACTTCGCAATTTATTTATTTTTCTGATCGCTCTCCTGGCGTTTTGTGCTTGCCTTACCACACTTCGAA
TCGTTTCTACTTGGCAATCCGCCAACACGTTCACAGATTCTCGTCGCAGCTTGCCACCTTCCACGGCTCTACTTGCAGAAGCGCCGTCATCTGATCTCCTAATTCGGCATGATTTATCGCCGAACGTAACAGAGGACGATAAACGTTTCTGGGCTCAGCCAGATAATTTGGGGTACAAGCCGTGTATTGAGTTCAGTATT
GAGTACAGGCAGGCGTCGCTGGGCATTGTGAAGAGAAGGCGCAGGTATTTGATGGTGGTCGTCTCGGGTGGTCTCAATCAGCAGCGCAATCAGATTGTTGACGCGGTTGTCATTGCCAGAATTCTGGAGACAGCTTTGGTTATTCCCGTTCTGCAATTCAATCAAATTTGGGAGGACGACAGTGAATTCTCTGATATCTT
CGACGTCGACCATTTCAAGAAAACTCTTAAAGACGACGTCACAATCCTTTCTTCGCTGCCTTCCACTCATTTGACGTCGAGGCCAGTGGAGGAGAAGATAAATAATCTCCACGTTAGCCCCAGCTGGTTTCGATCTCGCTACCTCACGCGGTTGAACAAAGAAATTCTGGTTCTTCGAAAATTGGATTCGAGACTTTCCA
AGGATCTTCCTTCCGATCTTCAAAAGCTCCGTTGCAAGGTCGCCTTCCACGCCTTACGATTTGCAGCACCAATTCAAGAACTGGGGAACAGGCTGGCGAAAAGAATGTCGAAAAAGGGTCCTTACATAGCTCTTCATTTACGGCTGGAGAAAGATGTGTGGGTTAGAACCGGATGCCTTCCCAGCTTGGGTCCAGAATAC
GACCAAATAATCCAACAGGAGCGCAGAAGCCATCCAGATTTCCTCACGTCACGATCCAACATGACTTACACAGAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCGCCAGgttattttctttccctcttcttttaagcatgaatattccttacaattttcattattgatctcctatctgcatccatct
tggccttacttgtaacagGCTTCTTAAAGCCCTGGGAGCACCGAAAAACAGCCTCATATACTGGGCAGGCGGGGAACCGTTAGAAGGAAGGAAGGCGGTAGAGCCTCTGATCAAACACCTCCCAAATCTTTACAACAAGCAGAGCCTGGCCTTGCCAGGCGAGCTCGAACCTTTGAACAACAGAGCATCGCTTCTTGCTG
CAATCGATTACATTGTGGCACTAAACAGCGATGTTTTCATGGCATCGCATGGAGGAAACATGGGCCGTGTGATTCAGGGCCACAGGGCATACGCAGGCCACAAAAAGCACATAACTCCCAACAAAAAACAGATGCTCCCTCGCTTCCTTGACAAAACATTGGGTGAAGAAGATTTTAACAAGATTGTTAGGCATCTGCAT
AACAACTCTGTGGGGCAACCGGTATTCAGAACGAAGAAAGCAGGACGCGATGTGGTGGCTTACCCTGTTCCCGAGTGCATGTGCACAAACCAGAACAGGACTAGGAGCACAAGCAGTCCTGTCCCTTCCACATGGTAGCTTTCTTTAACTGCGCCACGAATTTAATTGCAAGTGGTCAAGGCAGCCATCCGAAGTTCGAC
TGAAGATTTGCAAAACGGTGGATAATTTAAACGTCTGGTCCTAAAATATTTAGGTCTGAGCAGATCAGTAGAATATTGCCGGAGACCACAATTTTTTGGTGTTATCGACGCCAGTAAGAGGCAGAGTTGTTGTTTGAATAATCT
Intron 3 GTGAGCGCGT ... TCGATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.84 | 12 | 7 | 1.7 |
| A2 | 22.22 | 14 | 4 | 0 |
| A3 | 20.83 | 19 | 5 | 5 |
| A4 | 19.05 | 17 | 4 | 4 |
| A5 | 33.33 | 4 | 2 | 2.7 |
| A6 | 20 | 20 | 5 | 3.3 |
| A7 | 32.08 | 36 | 17 | 4.7 |
| A8 | 32.14 | 19 | 9 | 4 |
| A9 | 20 | 60 | 15 | 6 |
| A10 | 18.89 | 73 | 17 | 9 |
>TRINITY_DN44727_c2_g4_i1 from sample A6 / Example spliced isoformGCATGCATACACTTCCCAAGAGATTCTACTTAAAGAACATATAGCAGAGATCTACGTGTCTGGTACAGCTTCCGTTGAAACAACGCCTTTTGTAGCTGCCATTGTTTGTGATTCGTTACAAGAATTGGAGAGAGACCATTAGCTCAGGCACATCGCCGCCGACATTGCAGGAGTTTCCAAAACGCAGAATCATGTTTTTC
TTTATTAGGAACTGCCAAAATGGAAGAAGCCCCGCCCCTTCATTTGACTGATTTCTCATTGCTTTTCAAATCTGTGCTCCCAAGCAGGCTTGCTGCAACGATCATGAATTCTTGCAAAAGTCTGGCCGGAATACCCATCACTGCAACTGAAAAGAAACTCAGAAAGAAGCCCAGCTGGATTAAGAAGTTTTTGCAAACAT
AATCATCGATCGAGAATCACACCAAAAAGTATTTATAAATTCCCAGGGAAATGATAACTTCTGATCTTGCGACGTCTGTGAAAGGTCATCTCATGCGGCCCAGGAAAGGCCTCACACAAGCACTTCGCAATTTATTTATTTTTCTGATCGCTCTCCTGGCGTTTTGTGCTTGCCTTACCACACTTCGAATCGTTTCTACT
TGGCAATCCGCCAACACGTTCACAGATTCTCGTCGCAGCTTGCCACCTTCCACGGCTCTACTTGCAGAAGCGCCGTCATCTGATCTCCTAATTCGGCATGATTTATCGCCGAACGTAACAGAGGACGATAAACGTTTCTGGGCTCAGCCAGATAATTTGGGGTACAAGCCGTGTATTGAGTTCAGTATTGAGTACAGGCA
GGCGTCGCTGGGCATTGTGAAGAGAAGGCGCAGGTATTTGATGGTGGTCGTCTCGGGTGGTCTCAATCAGCAGCGCAATCAGATTGTTGACGCGGTTGTCATTGCCAGAATTCTGGAGACAGCTTTGGTTATTCCCGTTCTGCAATTCAATCAAATTTGGGAGGACGACAGTGAATTCTCTGATATCTTCGACGTCGACC
ATTTCAAGAAAACTCTTAAAGACGACGTCACAATCCTTTCTTCGCTGCCTTCCACTCATTTGACGTCGAGGCCAGTGGAGGAGAAGATAAATAATCTCCACGTTAGCCCCAGCTGGTTTCGATCTCGCTACCTCACGCGGTTGAACAAAGAAATTCTGGTTCTTCGAAAATTGGATTCGAGACTTTCCAAGAATCTTCCT
TCCGATCTTCAAAAGCTCCGTTGCAAGGTCGCCTTCCACGCCTTACGATTTGCAGCACCAATTCAAGAACTGGGGAACAGGCTGGCGAAAAGAATGTCGAAAAAGGGTCCTTACATAGCTCTTCATTTACGGCTGGAGAAAGATGTGTGGGTTAGAACCGGATGCCTTCCCAGCTTGGGTCCAGAATACGACCAAATAAT
CCAACAGGAGCGCAGAAGCCATCCAGATTTCCTCACGTCACGATCCAACATGACTTACACAGAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCGCCAGGCTTCTTAAAGCCCTGGGAGCGCCGAAAAACAGCCTCATATACTGGGCAGGCGGGGAACCGTTAGGAGGAAAGAAGGCGGTGGAGCCTC
TGATCAAACACTTCCCAAATCTTTACAACAAGCAGAGCCTGGCCTTGCCAGGCGAGCTCGAACCTTTGAACAACAGAGCATCGCTTCTTGCTGCAATCGATTACATTGTGGCACTAAACAGCGATGTTTTCATGGCGTCACATGGAGGAAACATGGGCCGTGTGATTCAGGGCCACAGGGCATACGCAGGCCACAAAAAG
CACATAACTCCCAACAAAAAACAGATGCTCCCTCGCTTCCTTGACAAAACATTGGGTGAAGAAGATTTTAACAAGATTGTTAGACATCTGCATAACAACTCTGTGGGGCAACCGGTATTCAGAACGAAGAAAGCAGGACGCGATGTGGTGGCTTACCCTGTTCCCGAGTGCATGTGCACAAACCAGAACAGGACTAGGAC
CACAAGCAGTCCTGTCCCTTCCACATGGTAGCTTTCTTTAACTGCGCCACGAATTTAATTGCAAGTGGTCAAGGCAGCCATCCGAAGTTCGACTGAAGATTTGCAAAACGGTGGATAATTTAAACGTCTGCTCCTAAAATATTTAGGTATGAGCAGATCAGTAGAATATTGCCGGAGACCACAATTTTTTGGTGTTATCG
ACGCCAGTAAGAGGCAGAGTTGTTGTTTGAATAATCTGCAAACTGTTGAACAAGCCCTACCGGGCTCCTGAACAGATTTACGGTGGGGACTCAATCTGTTTTCCATGAAACCCGTCCCGGTCATCAGGACCCAGACGGCCTCCAAAAGTCAGCACTTCATTTCATTTTTTTCAAATTTTTTTACGCTGACCCTGATATTC
ACCCCTGTGAATCAAGGGTAGCACTTCATTTCATTTATGTATACAAAATCCTCTAAAGGGATCGAAGACCAATTCCAATCCTCGTCTAGCACATCGATGTCAAGATTAAATTTTATGAAAAATCAGCCCTTGCCATTCATGTGCAACTTACATAATAAAAATCGCTAAAGAGAAGGTTTGCTTTTGGTTTAATGAAATGA
AAAAGAGAAATGAAGAGAAGTTTTGCTTTTGGTTTTAATGAAATGAAAAAGAGAAATGAAAAGAGAAGTTTTGTTTTTGGTTTTAATGAAATGAAAAAGAGAAATGAAAAGAGAAGTTTTGTTTTTGGTTTTAATGAAATGAAAA
>TRINITY_DN44727_c2_g4_i2 from sample A6 / Example unspliced isoform:GTAATTTGTTTATAATATGCGCCCATGCCGTCACCTTCATTTATTTAGCGTTCTATGCAGATTTTGACTATGTCTTTTATGCAGTGAATTCTCTGATATCTTCGACGTCGACCATTTCAAGAAAACTCTTAAAGACGACGTCACAATCCTTTCTTCGCTGCCTTCCACTCATTTGACGTCGAGGCCAGTGGAGGAGAAGA
TAAATAATCTCCACGTTAGCCCCAGCTGGTTTCGATCTCGCTACCTCACGCGGgtgagcgcgtaatttattcaaattccacgaatctcatcttttgcatagtgcgtttagaatttcccaatttaaattaatgactgttgagcatgatctatattcgatggcagTTGAACAAAGAAATTCTGGTTCTTCGAAAATTGGATT
CGAGACTTTCCAAGAATCTTCCTTCCGATCTTCAAAAGCTCCGTTGCAAGGTAATTAAGTTGGCAATAGACGACAGACGGTTTCTTAATACAGTACTATAGTTTAATGTTTGTGTTCCAGGTCGCCTTCCACGCCTTACGATTTGCAGCACCAATTCAAGAACTGGGGAACAGGCTGGCGAAAAGAATGTCGAAAAAGGG
TCCTTACATAGCTCTTCATTTACGGCTGGAGAAAGATGTGTGGGTTAGAACCGGATGCCTTCCCAGCTTGGGTCCAGAATACGACCAAATAATCCAACAGGAGCGCAGAAGCCATCCAGATTTCCTCACGTCACGATCCAACATGACTTACACAGAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCG
CCAGGCTTCTTAAAGCCCTGGGAGCGCCGAAAAACAGCCTCATATACTGGGCAGGCGGGGAACCGTTAGGAGGAAAGAAGGCGGTGGAGCCTCTGATCAAACACTTCCCAAATCTTTACAACAAGCAGAGCCTGGCCTTGCCAGGCGAGCTCGAACCTTTGAACAACAGAGCATCGCTTCTTGCTGCAATCGATTACATT
GTGGCACTAAACAGCGATGTTTTCATGGCGTCACATGGAGGAAACATGGGCCGTGTGATTCAGGGCCACAGGGCATACGCAGGCCACAAAAAGCACATAACTCCCAACAAAAAACAGATGCTCCCTCGCTTCCTTGACAAAACATTGGGTGAAGAAGATTTTAACAAGATTGTTAGACATCTGCATAACAACTCTGTGGG
GCAACCGGTATTCAGAACGAAGAAAGCAGGACGCGATGTGGTGGCTTACCCTGTTCCCGAGTGCATGTGCACAAACCAGAACAGGACTAGGACCACAAGCAGTCCTGTCCCTTCCACATGGTAGCTTTCTTTAACTGCGCCACGAATTTAATTGCAAGTGGTCAAGGCAGCCATCCGAAGTTCGACTGAAGATTTGCAAA
ACGGTGGATAATTTAAACGTCTGCTCCTAAAATATTTAGGTATGAGCAGATCAGTAGAATATTGCCGGAGACCACAATTTTTTGGTGTTATCGACGCCAGTAAGAGGCAGAGTTGTTGTTTGAATAATCTGCAAACTGTTGAACAAGCCCTACCGGGCTCCTGAACAGATTTACGGTGGGGACTCAATCTGTTTTCCATG
AAACCCGTCCCGGTCATCAGGACCCAGACGGCCTCCAAAAGTCAGCACTTCATTTCATTTTTTTCAAATTTTTTTACGCTGACCCTGATATTCACCCCTGTGAATCAAGGGTAGCACTTCATTTCATTTATGTATACAAAATCCTCTAAAGGGATCGAAGACCAATTCCAATCCTCGTCTAGCACATCGATGTCAAGATT
AAATTTTATGAAAAATCAGCCCTTGCCATTCATGTGCAACTTACATAATAAAAATCGCTAAAGAGAAG
Intron 4 GTAATTTGTT ... TTTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.52 | 66 | 15 | 15 |
| A2 | 20.48 | 33 | 12 | 5 |
| A3 | 22.22 | 70 | 24 | 16 |
| A4 | 18.18 | 36 | 7 | 9 |
| A5 | 22.73 | 34 | 14 | 6 |
| A6 | 21.35 | 105 | 37 | 20 |
| A7 | 24.23 | 197 | 67 | 59 |
| A8 | 22.26 | 103 | 33 | 26 |
| A9 | 22.9 | 165 | 60 | 38 |
| A10 | 24.16 | 237 | 86 | 65 |
>TRINITY_DN44114_c0_g2_i1 from sample A9 / Example spliced isoformGTTAATATAAATTGAAAGCGATTTGAAATTTGAAATTGTAAAATAGCATGCATACACTTCCCAAGAGATTCTACTTAAAGAACATATAGCAGAGATCTACGTGTCTGGTACAGCTTCCGTTGAAACAACGCCTTTTGTAGCTGCCATTGTTTGTGATTCGTTACAAGAATTGGAGAGAGACCATTAGCTCAGGCACATCG
CCGCCGACATTGCAGGAGTTTCCAAAACGCAGAATCATGTTTTTCTTTATTAGGAACTGCCAAAATGGAAGAAGCCCCGCCCCTTCATTTGACTGATTTCTCATTGCTTTTCAAATCTGTGCTCCCAAGCAGGCTTGCTGCAACGATCATGAATTCTTGCAAAAGTCTGGCCGGAATACCCATCACTGCAACTGAAAAGA
AACTCAGAAAGAAGCCCAGCTGGATTAAGAAGTTTTTGCAAACATAATCATCGATCGAGAATCACACCAAAAAGTATTTATAAATTCCCAGGGAAATGATAACTTCTGATCTTGCGACGTCTGTGAAAGGTCATCTCATGCGGCCCAGGAAAGGCCTCACACAAGCACTTCGCAATTTATTTATTTTTCTGATCGCTCTC
CTGGCGTTTTGTGCTTGCCTTACCACACTTCGAATCGTTTCTACTTGGCAATCCGCCAACACGTTCACAGATTCTCGTCGCAGCTTGCCACCTTCCACGGCTCTACTTGCAGAAGCGCCGTCATCTGATCTCCTAATTCGGCATGATTTATCGCCGAACGTAACAGAGGACGATAAACGTTTCTGGGCTCAGCCAGATAA
TTTGGGGTACAAGCCGTGTATTGAGTTCAGTATTGAGTACAGGCAGGCGTCGCTGGGCATTGTGAAGAGAAGGCGCAGGTATTTGATGGTGGTCGTCTCGGGTGGTCTCAATCAGCAGCGCAATCAGATTGTTGACGCGGTTGTCATTGCCAGAATTCTGGAGACAGCTTTGGTTATTCCCGTTCTGCAATTCAATCAAA
TTTGGGAGGACGACAGTGAATTCTCTGATATCTTCGACGTCGACCATTTCAAGAAAACTCTTAAAGACGACGTCACAATCCTTTCTTCGCTGCCTTCCACTCATTTGACGTCGAGGCCAGTGGAGGAGAAGATAAATAATCTCCACGTTAGCCCCAGCTGGTTTCGATCTCGCTACCTCACGCGGTTGAACAAAGAAATT
CTGGTTCTTCGAAAATTGGATTCGAGACTTTCCAAGAATCTTCCTTCCGATCTTCAAAAGCTCCGTTGCAAGGTCGCCTTCCACGCCTTACGATTTGCAGCACCAATTCAAGAACTGGGGAACAGGCTGGCGAAAAGAATGTCGAAAAAGGGTCCTTACATAGCTCTTCATTTACGGCTGGAGAAAGATGTGTGGGTTAG
AACCGGATGCCTTCCCAGCTTGGGTCCAGAATACGACCAAATAATCCAACAGGAGCGCAGAAGCCATCCAGATTTCCTCACGTCACGATCCAACATGACTTACACAGAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCGCCAGGCTTCTTAAAGCCCTGGGAGCGCCGAAAAACAGCCTCATATACT
GGGCAGGCGGGGAACCGTTAGGAGGAAAGAAGGCGGTGGAGCCTCTGATCAAACACTTCCCAAATCTTTACAACAAGCAGAGCCTGGCCTTGCCAGGCGAGCTCGAACCTTTGAACAACAGAGCATCGCTTCTTGCTGCAATCGATTACATTGTGGCACTAAACAGCGATGTTTTCATGGCGTCACATGGAGGAAACATG
GGCCGTGTGATTCAGGGCCACAGGGCATACGCAGGCCACAAAAAGCACATAACTCCCAACAAAAAACAGATACTCCCTCGCTTCCTTGACAAAACATTGGGTGAAGAAGATTTTAACAAGATTGTTAGGCATCTGCATAACAACTCTGTGGGGCAACCGGTATTCAGAACGAAGAAAGCAGGACGCGATGTGGTGGCTTA
CCCTGTTCCCGAGTGCATGTGCACAAACCAGAACAGGACTAGGACCACAAGCAGTCCTGTCCCTTCCACATGGTAGCTTTCTTTAACTGCGCCACGAATTTAATTGCAAGTGGTCAAGGCAGCCATCCGAAGTTCGACTGAAGATTTGCAAAACGGTGGATAATTTAAACGTCTGCTCCTAAAATATTTAGGTATGAGCA
GATCAGTAGAATATTGCCGGAGACCACAATTTTTTGGTGTTATCGACGCCAGTAAGAGGCAGAGTTGTTGTTTGAATAATCTGCAAACTGTTGAACAAGCCCTACCGGGCTCCTGAACAGATTTACGGTGGGGACTCAATCTGTTTTCCATGAAACCCGTCCCGGTCATCAGGACCCAGACGGCCTCCAAAAGTCAGCAC
TTCATTTCATTTTTTTCAAATTTTTTTACGCTGACCCTGATATTCACCCCTGTGAATCAAGGGTAGCACTTCATTTCATTTATGTATACAAAATCCTCTAAAGGGATCGAAGACCAATTCCAATCCTCGTCTAGCACATCGATGTCAAGATTAAATTTTATGAAAAATCAGCCCTTGCCATTCATGTGCAACTTACATAA
TAAAAATCGCTAAAGAGAAGGTTTGCTTTTGGTTTAATGAAATGAAAAAGAGAAATGAAGAGAAGGTTTGCTTTTGGTTTTAATGAAATGAAAAAGAGAAATGAAAAGAGAAGTTTTGTTT
>TRINITY_DN44114_c0_g2_i6 from sample A9 / Example unspliced isoform:GTTAATATAAATTGAAAGCGATTTGAAATTTGAAATTGTAAAATAGCATGCATACACTTCCCAAGAGATTCTACTTAAAGAACATATAGCAGAGATCTACGTGTCTGGTACAGCTTCCGTTGAAACAACGCCTTTTGTAGCTGCCATTGTTTGTGATTCGTTACAAGAATTGGAGAGAGACCATTAGCTCAGGCACATCG
CCGCCGACATTGCAGGAGTTTCCAAAACGCAGAATCATGTTTTTCTTTATTAGGAACTGCCAAAATGGAAGAAGCCCCGCCCCTTCATTTGACTGATTTCTCATTGCTTTTCAAATCTGTGCTCCCAAGCAGGCTTGCTGCAACGATCATGAATTCTTGCAAAAGTCTGGCCGGAATACCCATCACTGCAACTGAAAAGA
AACTCAGAAAGAAGCCCAGCTGGATTAAGAAGTTTTTGCAAACATAATCATCGATCGAGAATCACACCAAAAAGTATTTATAAATTCCCAGGGAAATGATAACTTCTGATCTTGCGACGTCTGTGAAAGGTCATCTCATGCGGCCCAGGAAAGGCCTCACACAAGCACTTCGCAATTTATTTATTTTTCTGATCGCTCTC
CTGGCGTTTTGTGCTTGCCTTACCACACTTCGAATCGTTTCTACTTGGCAATCCGCCAACACGTTCACAGATTCTCGTCGCAGCTTGCCACCTTCCACGGCTCTACTTGCAGAAGCGCCGTCATCTGATCTCCTAATTCGGCATGATTTATCGCCGAACGTAACAGAGGACGATAAACGTTTCTGGGCTCAGCCAGATAA
TTTGGGGTACAAGCCGTGTATTGAGTTCAGTATTGAGTACAGGCAGGCGTCGCTGGGCATTGTGAAGAGAAGGCGCAGGTATTTGATGGTGGTCGTCTCGGGTGGTCTCAATCAGCAGCGCAATCAGATTGTTGACGCGGTTGTCATTGCCAGAATTCTGGAGACAGCTTTGGTTATTCCCGTTCTGCAATTCAATCAAA
TTTGGGAGGACGACAGgtaatttgtttataatatgcgcccatgccgtcaccttcatttatttagcgttctatgcagattttgactatgtcttttatgcagTGAATTCTCTGATATCTTCGACGTCGACCATTTCAAGAAAACTCTTAAAGACGACGTCACAATCCTTTCTTCGCTGCCTTCCACTCATTTGACGTCGAGG
CCAGTGGAGGAGAAGATAAATAATCTCCACGTTAGCCCCAGCTGGTTTCGATCTCGCTACCTCACGCGGTTGAACAAAGAAATTCTGGTTCTTCGAAAATTGGATTCGAGACTTTCCAAGAATCTTCCTTCCGATCTTCAAAAGCTCCGTTGCAAGGTCGCCTTCCACGCCTTACGATTTGCAGCACCAATTCAAGAACT
GGGGAACAGGCTGGCGAAAAGAATGTCGAAAAAGGGTCCTTACATAGCTCTTCATTTACGGCTGGAGAAAGATGTGTGGGTTAGAACCGGATGCCTTCCCAGCTTGGGTCCAGAATACGACCAAATAATCCAACAGGAGCGCAGAAGCCATCCAGATTTCCTCACGTCACGATCCAACATGACTT
Intron 5 GTGCTCTCTT ... ACTGCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 83.3 | 27.7 | 12 |
| A2 | 21.23 | 45.3 | 12 | 13 |
| A3 | 21.99 | 61 | 17 | 7.3 |
| A4 | 29.12 | 27 | 11 | 9 |
| A5 | 14.75 | 24.7 | 4 | 9.3 |
| A6 | 25.48 | 127.7 | 43 | 21.7 |
| A7 | 24.4 | 222.7 | 71 | 30 |
| A8 | 25.74 | 178 | 61 | 25.7 |
| A9 | 19.62 | 189.3 | 45.7 | 22.7 |
| A10 | 19.22 | 212 | 50 | 25 |
>TRINITY_DN108290_c0_g1_i5 from sample A4 / Example spliced isoformATAGCGAGAAGGTTATGTCATTTCGGTCTAGAATCCTCCTGCCCCGGCTTTGATAACTTTCAACGTTCTATGCTCGTCTTTCATTTAATCCCTCAACCACTGGTAAAAACAAATAGGGCGAGAAAAAAAAACGCTGCCTTATTCCTCTCTCAGGTGTAAAGCACAGCAAAACAAACAGAACTCGGGTGCTCCTATTCGTC
TTTCGTCTTTCAGGGAAGCAGAGCCTAAAATAAGAACGGCAAAAGAAACAAAACTCGGTTGCCTTATTCCTCTTTGCATATATTATTTGTGTGCATGTTGCTCTGAGCTATAGCTCTTATTCTACCATTTTTTTTTAAGGATTCCATTTATTGGTAGAGATTTCCTCACATCACGAACCAACATGACTTGCGCTCACACA
GAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCGCCAGGTTATTTTCTTTCCCTCTTCTTTTAAGCATGAATATTCCTTACAATTTTCATTATTGATCTCCTATCTGCATCCATCTTGGCCTTACTTGTAACAGGCTTCTTAAAGCCCTGGGAGCGCCGAAAAACAGCCTCATATACTGGGCAGGCGG
GGAACCGTTAGAAGAAAAGAAGGCGGTAGAGCCTCTGATCAAACACCTCCCAAATCTTTACAACAAGCAGAACCTGGCCTTGCCAGGCGAGCTCGAACCTTTGAACAACAGAGCATCGCTTCTTGCTGCAATCGATTACATTGTGGCACTAAACAGCGATGTTTTCATGGCATCGCATGGAGGAAACATGGGCCGTGTGG
TTCAGGGCCACAGGGCATACGCAGGCCACAAAAAGCACATAACTCCCAACAAAAAACAGATACTCCCTCGCTTCCTTGACAAAACATTG
>TRINITY_DN108290_c0_g1_i11 from sample A4 / Example unspliced isoform:ATAGCGAGAAGGTTATGTCATTTCGGTCTAGAATCCTCCTGCCCCGGCTTTGATAACTTTCAACGTTCTATGCTCGTCTTTCATTTAATCCCTCAACCACTGGTAAAAACAAATAGGGCGAGAAAAAAAAACGCTGCCTTATTCCTCTCTCAGGTGTAAAGCACAGCAAAACAAACAGAACTCGGGTGCTCCTATTCGTC
TTTCGTCTTTCAGGGAAGCAGAGCCTAAAATAAGAACGGCAAAAGAAACAAAACTCGGTTGCCTTATTCCTCTTTGCATATATTATTTGTGTGCATGTTGCTCTGAGCTATAGCTCTTATTCTACCATTTTTTTTTAAGGATTCCATTTATTGGTAGAGATTTCCTCACATCACGAACCAACATGACTTGCGCTCACACA
GAGCGCAAGCTTGCTGGTCTCTGTCCTCTTAATGCCATGGAAGTCGCCAGGCTTCTTAAAGCCCTGGGAGCGCCGAAAAACAGCCTCATATACTGGGCAGGCGGGGAACCGTTAGAAGGAAGGAAGGCGGTAGAGCCTCTGATCAAACACCTCCCAAATCTTTACAACAAGCAGAACCTGGCCTTGCCAGGCGAGCTCGA
ACCTTTGAACAACAGAGCATCGCTTCTTGCTGCAATCGATTACATTGTGGCACTAAACAGCGATGTTTTCATGGCATCGCATGGAGGAAACATGGGCCGTGTGGTTCAGgtgctctcttcttctccgtgcttagaattgtatagcatattctatccattattgcaccatggaatttaatattggtctatacgattgtact
gcaacagGGCCACAGGGCATACGCAGGCCACAAAAAGCACATAACTCCCAACAAAAAATAGATACTCCCTCGCTTCCTTGACAAAACATTG