NA ----> NA

Intron 1 GTCTGTATTT ... TCATCAATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	21.04	159	45	39
A2	13.74	107.5	21.5	12.5
A3	23.39	91.5	30	24
A4	18.21	128	30	27
A5	20.3	36.5	12	6.5
A6	21.38	29	9.5	5.5
A7	23.2	144.5	36	50.5
A8	24.5	194.5	58.5	64.5
A9	10.15	140.5	18	13
A10	25.37	112.5	44	30

>TRINITY_DN122487_c1_g1_i5 from sample A3 / Example spliced isoform

GAAATATCTATGTAAGAGAGATTGTAGTATACTATGCAGAAGCAGAGGCATTGCTTGGTATCAATCCAAAGGAGCTAGACAATGAAGCTCTTGCTTTAATCCTTTATCACATTAAGGCTCGTACATATGTTGGGGTCGATGTTTGCGAGGATCTACAACAATCGTCAAAACAAAGATGACGATTATGGTTAGGCGATGAT
GGATACTGGACTACCTGTTTAGCGTTTCTTCAGATTCACACTTGGGGGCTTGCAGCTTGGTGTCAATCCAAAGGAGCTAGACAATGAAGCTCTTGCTTTAATCCTTTATCACTTTGAGGCTCGTACCTATGTTGGGG

>TRINITY_DN122487_c1_g1_i4 from sample A3 / Example unspliced isoform:

GTAATGGAAATAAGGCACTATAGGGTAACCTTCCCATTAAATGTAGTCTCTATCCAAGATATATTCTCTAGAAGGGACACTTCACATTTGAAATTGCTGCAACTTGGTTAATTTAATCAGTGAAACTCCTGTGTGTCTTCCAATGATGTTGTTTTCCTTATTATTAATAGACGATGATGGTTAGGCGATGATGGATACTG
GACTACCTGTTTAGCGTTTCTTCAGATTCACACTTGGGGGgtctgtattttgctctgtttatctttgtttcagattaatatttgggagtcttattttgctctattctgttgatgataaagcacaattttatattaattttaactgtgttctatttcatcaatagCTTGCAGCTTGGTGTCAATCCAAAGGAGCTAGACAA
TGAAGCTCTTGCTTTAATCCTTTATCACTTTGAGGCTCGTACCTATGTTGGGG

Intron 2 GTAATGGAAA ... TTATTAATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.58	299	82	73
A2	17.88	186	57	24
A3	17.67	212	60	31
A4	17.41	230	70	27
A5	16.36	69	13	14
A6	13.51	64	13	7
A7	21.25	339	136	47
A8	18.85	366	100	70
A9	15.77	299	72	40
A10	19.51	198	64	32

>TRINITY_DN122487_c1_g1_i6 from sample A3 / Example spliced isoform

GAAATATCTATGTAAGAGAGATTGTAGTATACTATGCAGAAGCAGAGGCATTGCTTGGTATCAATCCAAAGGAGCTAGACAATGAAGCTCTTGCTTTAATCCTTTATCACATTAAGGCTCGTACTTATTTTGGGGTCGATGTTTGCGAGGATCTACAACAATCGTCAAAACAAAGATGACGATGATGGTTAGGCGATGAT
GGATACTGGACTACCTGTTTAGCGTTTCTTCAGATTCACACTTGGGGGCTTGCAGCTTGGTATCAATCCAAAGAAGCTAGACAATGAAGCTCTTGCTTTAATCCTTTATCACTTTGAGGCTCGTACCTATGTTGGGG

>TRINITY_DN122487_c1_g1_i1 from sample A3 / Example unspliced isoform:

GAAATATCTATGTAAGAGAGATTGTAGTATACTATGCAGAAGCAGAGGCATTGCTTGGTATCAATCCAAAGGAGCTAGACAATGAAGCTCTTGCTTTAATCCTTTATCACATTAAGGCTCGTACATATGTTGGGGTCGATGTTTGCGAGGATCTACAACAATCGTCAAAACAAAGATGgtaatggaaataaggcactata
gggtaaccttcccattaaatgtagtctctatccaagatatattctctagaagggacacttcacatttgaaattgctgcaacttggttaatttaatcagtgaaactcctgtgtgtcttccaatgatgttgttttccttattattaatagACGATGATGGTTAGGCGATGATGGATACTGGACTACCTGTTTAGCGTTTCTT
CAGATTCACACTTGGGGGCTTGCAGCTTGTTATCAATCCAAAGGAGCTAGACAAGCTAGACAATGAAGCTCTTGCTTTAATCCTTTATCACTTTGAGGCTCGTACCTATGTTGGGG