sp|Q9SSM2|MDLL_ARATH ----> (R)-mandelonitrile lyase-like

Intron 1 ATGGGCTTGC ... TTATAAATAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60.66	36	67	44
A2	56.92	28	42	32
A3	60	31	50	43
A4	61.54	20	29	35
A5	55.88	15	27	11
A6	58.36	173	272	213
A7	62.05	277	498	408
A8	59.54	317	514	419
A9	60.31	285	451	415
A10	58.73	298	479	369

>TRINITY_DN105683_c0_g2_i5 from sample A4 / Example spliced isoform

CCAACCTCAAGAATCTCAAAATTGTGACAAGGGCAAAGGTCTTCAAGGTCTTCTTCGGTATCAGTGATAAAGAGCAAGAAACAGCAGGAGGACAAGCTATGTCAAAACCCAAGGCTTATGCCGTGGAGTATGTTGACAGTGCTGGAACACATCATCTGGTTTTATTAAAGCCAAGTGATGGAGGTGAGGTCATCATTTCC
TCTGGTGCTCTTGGGAGTCCTCAGCTGCTTCTCCTCAGCGGAATCGGCCCACGTGAGCACTTGGAATCTTTAGGCATCCCTGTGGTTATGGATTTACCTGGAGTTGGACAAGGAATGGGTGATAACCCAAAAGTTGGGATTGCATTTATTTCTTCTCGACAACTTGAATATGCATTGCCTCGAGTTGTGGGTATAACTCC
TGGAAGTTGTATTGAATCAGCTAGTATTCCAACTCACAACCCATTCATTTATGATACTCGTCACAAACCATTCCTGTATGATACTGATGATGACTCCAACGGCGACCCGGATCCAGAAAGAGCATACCCATATGCATATCTCAATGTGGCAAGCATTTTTGAGATTGTGGCAGGGCCTCTATCGAAGGGGGAGCTTCATC
TTAGGTCAAGGGATTTTAACGATACTCCTTCTGTCCAATTCAATTATTTTTCCCATCCGCAGGATCTAGAAAACTGTGTGAACGGGCTGAGAACCATCAAAAGGATTAAGGAAACAATTCGCAATTCTTTTTTTATTGGTACTCTATTCCCTGCAAATACAAGTGACAATGAGGCAATGGAAGCATTCTGCCGGATGAAT
TTTTCTACCTCATGGCACTATCACGGTGGTTGCCAAGTGGGCAGTGTTGTCAATGATAAATACCAAGTTCAGGGAATCGATTCTCTTCGGGTGATCGACGGATCGACCTTCAGTAGATCTCCTGGAAGTAATCCTCAAGCCACTGTAATGATGCTAGGAAGATACATGGTTGGCAAATTTTAAATTCAGAGGCTGTCAAA
TTTCTCTAAATCCTCACCAGCTGAATTGGTTGAGCCCTCTACTAAGGACAAAGACATCAGCAACACCACTTTCCAATTTGCAGAAAGTGAGATTTAGATACTCACAGTGGGTGCGGTTGCTCTCATTATCTTGAAAAGTCGGGGGATTCTTAGCCACAACCTCAACCAGAAGAAGCCTCAAAGAAATGTATATATAATTA
TGAATCTTGAATGTATGTCTCTTATCAGAAATTTTCCATACAAAGGATTCACATGTTTACATGACATTCAATGATGGCATC

>TRINITY_DN105683_c0_g2_i3 from sample A4 / Example unspliced isoform:

AGAAACAGCAGGAGGACAAGCTATGTCAAAACCCAAGGCTTATGCCGTGGAGAATGTTGACAGTGCTGGAACACATCATCTGGTTTTATTAAAGCCAAGTGATGGAGGTGAGGTCATCATTTCCTCTGGTGCTCTTGGGAGTCCTCAGCGGAATCGGCCCACGTGAGCACTTGGAATCTTTAGGCATCCCTGTGGTTATG
GATTTACCTGGAGTTGGACAAGGAATGGGTGATAACCCAAAAGTTGGGATTGCATTTATTTCTTCTCGACAACTTGAATATGCATTGCCTCGAGTTGTGGGTATAACTCCTGGAAGTTGTATTGAATCAGCTAGTATTCCAACTCACAACCCATTCATTTATGATACTCGTCACAAACCATTCCTGTATGATACTGATGA
TGACTCCAACGGCGACCCGGATCCAGAAAGAGCATACCCATATGCATATCTCAATGTGGCAAGCATTTTTGAGATTGTGGCAGGGCCTCTATCGAAGGGGGAGCTTCATCTTAGGTCAAGGGATTTTAACGATACTCCTTCTGTCCAATTCAATTATTTTTCCCATCCGCAGGATCTAGAAAACTGTGTGAACGGGCTGA
GAACCATCAAAAGGATTAAGGAAACAATTCGCAATTCTTTTTTTATTGGTACTCTATTCCCTGCAAATACAAGTGACAATGAGGCAATGGAAGCATTCTGCCGGATGAATTTTTCTACCTCATGGCACTATCACGGTGGTTGCCAAGTGGGCAGTGTTGTCAATGATAAATACCAAGTTCAGGGAATCGATTCTCTTCGG
GTGATCGACGGATCGACCTTCAGTAGATCTCCTGGAAGTAATCCTCAAGCCACTGTAATGATGCTAGGAAGATACatgggcttgcaaattttaaaagagaggttagcaaaatcttaattagtcctaatcagctgaaccggcaaagtccatttataaatacATGGTTGGCAAATTTTAAATTCAGAGGCTGTCAAATTTCT
CTAAATCCTCACCAGCTGAATTGGTTGAGCCCTCTACTAAGGACAAAGACATCAGCAACACCACTTTCCAATTTGCAGAAAGTGAGATTTAGATACTCACAGTGGGTGCGGTTGCTCTCATTATCTTGAAAAGTCGGGGGATTCTTAGCCACAACCTCAACCAGAAGAAGCCTCAAAGAAATGTATATATAATTATGAAT
CTTGAATGTATGTCTCTTATCAGAAATTTTCCATACAAAGGATTCACATGTTTACATGACATTCAATGATGGCATC

Intron 2 GTAGGTGCAT ... TGAGAAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	13.51	32	1	5
A2	33.96	35	1	18
A3	14.29	24	0	4
A4	29.17	17	0	7
A5	23.08	20	0	6
A6	22.06	53	0	15
A7	28.48	108	4	43
A8	21.28	74	1	20
A9	29.8	106	0	45
A10	28	90	1	35

>TRINITY_DN48586_c0_g3_i1 from sample A7 / Example spliced isoform

AAGTGGAGTACGCCATTCATCAGCAAATCTGCTGGACCATGCCAACCTCAAGAATCTCAAAATTGTTACAAGGGCAAAGGTCTTCAAGGTCTTCTTCGGTATCAGTGATAAAGAGCAAGCAGGAGGACAAGCTATGTCAAAACCCAAGGCTTATGCCGTGGAGAATGTTGACAGTGCTGGAACACATCATCTGGTTTTAT
TAAAGCCAAGTGATGGAGGTGAGGTCATCATTTCCTCTGGTGCTCTTGGGAGTCCTCAGCTGCTTCTCCTCAGCGGAATCGGCCCACGTGAGCACTTGGAATCTTTAGGCATCCCTGTGGTTATGGATTTACCTGGAGTTGGACAAGGAATGGGTGATAACCCAAAAGTTGGGATTGCATTTATTTCTACTCGACAACTT
GAATATGCATTACCTCGAGTTGTGGGTATAACTCCTGGAAGTTGTATTGAATCAGCTAGTATTCCAACTCACAACCCATTCATTTATGATACTCGTCACAAACCATTCCTGTATGATACTGATGATGACTCCAACGGCGACCCGGATCCAGAGATAGCATACCCATATGCATATCTCAATGTGGCAAGCATTTTTGAGAT
TGTGGCAGGGCCTCTATCGAAGGGGGAGCTTCATCTTAGGTCAAGGGATTTTAACGATACTCCTTCTGTCCAATTCAATTATTTTTCCCATCCGCAGGATCTAGAAAACTGTGTGAACGGGCTGAGAACCATCAAAAGGATTAAGGAAACAATTCGCAATTCTTTTTTTATTGGTACTCTATTCCCTGCAAATACAAGTG
ACAATGAGGCAATGGAAGCATTCTGCCGGATGA

>TRINITY_DN48586_c0_g3_i4 from sample A7 / Example unspliced isoform:

ATAAAGAGCAAGgtaggtgcatttctgttttctgattgcgtctttatagtagtattgcgtcttcttgatgtaaattgtgttgttccataattcattatattctgtaacttgttgagaaacagCAGGAGGACAAGCTATGTCAAAACCCAAGGCTTATGCCGTGGAGAATGTTGACAGTGCTGGAACACATCATCTGGTTT
TATTAAAGCCAAGTGATGGAGGTGAGGTCATCATTTCCTCTGGTGCTCTTGGGAGTCCTCAGCTGCTTCTCCTCAGCGGAATCGGCCCACGTGAGCACTTGGAATCTTTAGGCATCCCTGTGGTTATGGATTTACCTGGAGTTGGACAAGGAATGGGTGATAACCCAAAAGTTGGGATTGCATTTATTTCTACTCGACAA
CTTGAATATGCATTACCTCGAGTTGTGGGTATAACTCCTGGAAGTTGTATTGAATCAGCTAGTATTCCAACTCACAACCCATTCATTTATGATACTCGTCACAAACCATTCCTGTATGATACTGATGATGACTCCAACGGCGACCCGGATCCAGAGATAGCATACCCATATGCATATCTCAATGTGGCAAGCATTTTTGA
GATTGTGGCAGGGCCTCTATCGAAGGGGGAGCTTCATCTTAGGTCAAGGGATTTTAACGATACTCCTTCTGTCCAATTCAATTATTTTTCCCATCCGCAGGATCTAGAAAACTGTGTGAACGGGCTGAGAACCATCAAAAGGATTAAGGAAACAATTCGCAATTCTTTTTTTATTGGTACTCTATTCCCTGCAAATACAA
GTGACAATGAGGCAATGGAAGCATTCTGCCGGATGA