sp|Q9LX33|FNTA_ARATH ----> Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
Intron 1 GTAATGCGTC ... TTTCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.99 | 85 | 10 | 11 |
| A2 | 11.71 | 49 | 7 | 6 |
| A3 | 12.4 | 53 | 7 | 8 |
| A4 | 11.11 | 52 | 7 | 6 |
| A5 | 11.32 | 47 | 6 | 6 |
| A6 | 9.11 | 414 | 23 | 60 |
| A7 | 8.83 | 356 | 8 | 61 |
| A8 | 10.21 | 255 | 11 | 47 |
| A9 | 10.42 | 258 | 16 | 44 |
| A10 | 9.19 | 247 | 20 | 30 |
>TRINITY_DN113934_c0_g1_i1 from sample A1 / Example spliced isoformCGTGCCCTTTTGCTTTGTCTTTGGATCCAAAGAAAAACTGTGTTAGGCTTTGCATTCTTCTGCCCTTTTGCTTTTCTTGTGGGGCTTGTCTTTGGATCCCCCAAAAAATGTGTTATACTTGCATTCTTCGGTTGGACATTTCGTTGGGTTCCGTAGCATAGGAGGGCATAGAACACCCAGCAAGTTGTATTTTGACACAA
AGAAAATGGAGTCAGATGAGGACGAGGAAGTAGAGAGGGTTCCTCTCAGCCAGAGGCAGGAATGGAGTGATGTTGTGCCAATCCCTCAGGATGATGGTCCCGATCCAATTGTTTCAATTGCTTACACGGATGAATTCAGAGAAACCATGGACTACTTCAGAGCTGTTTTCGCTGCGGACGAGAGGAGTCCTCGGGCTTTG
GAGCTCACTGCTGAAGTCATTCACTTGAATGCTGGCAACTACACGGTTTGGCATTTCAGGCGTCTTATCCTGGAATCACTTCAAAGTGATCTGCAAGAGGAATTTAAATTCATTGAGCTTGTAGCTAAGGGCAGCTACAAGAATTACCAAATCTGGCATCATCGTCGATGGGTTGCTGAAAAATTGGGAACCATAGCAAC
TACCAGTGAACTACAGTTTACACAGAAAGTGCTATGCCTTGATGCTAAACATTATCATGCTTGGTCACATCGACAGTGGGCTCTGCAAGCGTTGGGAGGATGGGAAAATGAGCTTGAATATTGTCGGGAGCTTCTAGAAGTTGACATATTTAACAACTCTGCTTGGAATCAGAGGTATTTTGTTATAACAAAGAGTCCCT
TTTTGGGAGGTCTACAGGCTATGAGGGATTCTGAAGTAAGCTACTGCACTAATGCCATCTTAGGAAATCCTGACAATGAAAGTCCATGGAGATATTTAAGAGGGCTTTACAAAGGAGATAATGAAGCTTTTGTTAATGATCCTGCTATTTACAAAGTATGTATTTGTGTGCTGGAAAAGAACAAAAACTGTGTTTTTGCT
CTAAATCTCCTTTTAGATCTTTTATGTCACGGTTTTCAACCAACACCTGACCTGACTCAGATTGTAAGTACATGGGGGTTTTCTGGTTCAGACCAAAAGTATGCTAACTTTGTGTGTTTGATGTTGGAGAAAGTTGATCCGATGCGTGCACGATATTGGATTTGGCGTAGAGACAGCCTTCCAAGTCATATTTGCTAAAC
TAGCCACTATTTATATTGAATGTCAGCCGTATATTTCAATAATGAAATTTACATGTTTGGTAATACATTAGAGGGAGTTTGATTTTCCCTATTGAATTG
>TRINITY_DN113934_c0_g1_i3 from sample A1 / Example unspliced isoform:CGTGCCCTTTTGCTTTGTCTTTGGATCCAAAGAAAAACTGTGTTAGGCTTTGCATTCTTCTGCCCTTTTGCTTTTCTTGTGGGGCTTGTCTTTGGATCCCCCAAAAAATGTGTTATACTTGCATTCTTCGGTTGGACATTTCGTTGGGTTCCGTAGCATAGGAGGGCATAGAACACCCAGCAAGTTGTATTTTGACACAA
AGAAAATGGAGTCAGATGAGGACGAGGAAGTAGAGAGGGTTCCTCTCAGCCAGAGGCAGGAATGGAGTGATGTTGTGCCAATCCCTCAGGATGATGGTCCCGATCCAATTGTTTCAATTGCTTACACGGATGAATTCAGAGAAACCATGGACTACTTCAGAGCTGTTTTCGCTGCGGACGAGAGGAGTCCTCGGGCTTTG
GAGCTCACTGCTGAAGTCATTCACTTGAATGCTGGCAACTACACGGTTTGGCATTTCAGGCGTCTTATCCTGGAATCACTTCAAAGTGATCTGCAAGAGGAATTTAAATTCATTGAGCTTGTAGCTAAGGGCAGCTACAAGAATTACCAAATCTGGCATCATCGTCGATGGGTTGCTGAAAAATTGGGAACCATAGCAAC
TACCAGTGAACTACAGTTTACACAGAAAGTGCTATGCCTTGATGCTAAACATTATCATGCTTGGTCACATCGACAGTGGGCTCTGCAAGCGTTGGGAGGATGGGAAAATGAGCTTGAATATTGTCGGGAGCTTCTAGAAGTTGACATATTTAACAACTCTGCTTGGAATCAGgtaatgcgtcttcaatggcttagcttaa
agttgtgtttctgtaaaataaattatttctttcaatttttatacgttgcaacttcggaaaatatgattcttttccctgatacgcttgtatttccttcagtgattagagttcaatgtttggatgcgattgcatgatttctgcctatcagcttttctgaaaatattaacaatgcaggatctttggatgccattgcatcattc
ctgcctatcagtatttctgaaaatattaacattgcaggatcttcgttcttcttgtttctgttcacggtttgtcctataagcaatctgtgagatagtcacagcattctgtaatctgccaacagtattttgtatttattatcaatccataaattatcaattttctgggtggttttgagcagaggtgacatacctagataatt
ttgatgtttcttacggctgcagaattttgattgaaagcttctagattgtatgtatagattaaaatttaatatttatttgctttcacgttttcctgcagAGGTATTTTGTTATAACAAAGAGTCCCTTTTTGGGAGGTCTACAGGCTATGAGGGATTCTGAAGTAAGCTACTGCACTAATGCCATCTTAGGAAATCCTGAC
AATGAAAGTCCATGGAGATATTTAAGAGGGCTTTACAAAGGAGATAATGAAGCTTTTGTTAATGATCCTGCTATTTACAAAGTATGTATTTGTGTGCTGGAAAAGAACAAAAACTGTGTTTTTGCTCTAAATCTCCTTTTAGATCTTTTATGTCACGGTTTTCAACCAACACCTGACCTGAATCAGATTCTAAGTACATG
GGGGTTTTCTGGTTCAGACCAAAAGTATGCTAACTTTGTGTGTTTGATGTTGGAGAAAGTTGATCCGATGCGTGCACGATATTGGATTTGGCGTAGAGACAGCCTTCCAAGTCATATTTGCTAAACTAGCCACTATTTATATTGAATGTCAGCCGTATATTTCAATAATGAAATTTACATGTTTGGTAATACATTAGAGG
GAGTTTGATTTTCCCTATTGAATTG
Intron 2 GCATCATCGT ... ACATCGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.99 | 11.8 | 30 | 47 |
| A2 | 75.54 | 10.4 | 29 | 34 |
| A3 | 78.25 | 11.4 | 35 | 45 |
| A4 | 71.79 | 12.2 | 21 | 35 |
| A5 | 75.07 | 5.2 | 10 | 19 |
| A6 | 74.37 | 41.6 | 95 | 140 |
| A7 | 67.86 | 34.4 | 54 | 87 |
| A8 | 68.91 | 31.4 | 46 | 88 |
| A9 | 74.05 | 34 | 66 | 125 |
| A10 | 67.13 | 30.4 | 63 | 59 |
>TRINITY_DN95987_c0_g1_i1 from sample A4 / Example spliced isoformCTTGTCTTTGGATCCCTCAAAAAATGTGTTATACTTGCATTCTTCGGTTGGACATTTCGTTGGGTTCCGTAGCATAGGAGGGCATAGAACACCCAGCAAGTTGTATTTTGACACAAAGAAAATGGAGTCAGATGAGGACGAGGAAGTAGAGAGGGTTCCTCTCAGCCAGAGGCAGGAATGGAGTGATGTTGTGCCAATCC
CTCAGGATGATGGTCCCGATCCAATTGTTTCAATTGCTTACACGGATGAATTCAGAGAAACCATGGACTACTTCAGAGCTGTTTTCGCTGCGGACGAGAGGAGTCCTCGGGCTTTGGAGCTCACTGCTGAAGTCATTCACTTGAATGCTGGCAACTACACGGTTTGGCATTTCAGGCGTCTTATCCTGGAATCACTTCAA
AGTGATCTGCAAGAGGAATTTAAATTCATTGAGCTTGTAGCTAAGGGCAGCTACAAGAATTACCAAATCTGTGGGCTCTGCAAGCGTTGGGAGGATGGGAAAATGAGCTTGAATATTGTCGGGAGCTTCTAGAAGTTGACATATTTAACAACTCTGCTTGGAATCAGGTAATGCAGCTTATCTTAAAGTTGTGTTTCTGT
AAAATAAATTATTTCTTTCAATTTTTATACGTTGCAACTTCGGAAAATATGATTCTTTTCCCTGATACGCTTGTATTTCCTTCAGTGCTTAGAGTTCAATGTTTGGATGCGATTGCATGATTTCTGCCTATCAGCTTTTCTGAAAATATTA
>TRINITY_DN95987_c0_g1_i2 from sample A4 / Example unspliced isoform:CTTGTCTTTGGATCCCTCAAAAAATGTGTTATACTTGCATTCTTCGGTTGGACATTTCGTTGGGTTCCGTAGCATAGGAGGGCATAGAACACCCAGCAAGTTGTATTTTGACACAAAGAAAATGGAGTCAGATGAGGACGAGGAAGTAGAGAGGGTTCCTCTCAGCCAGAGGCAGGAATGGAGTGATGTTGTGCCAATCC
CTCAGGATGATGGTCCCGATCCAATTGTTTCAATTGCTTACACGGATGAATTCAGAGAAACCATGGACTACTTCAGAGCTGTTTTCGCTGCGGACGAGAGGAGTCCTCGGGCTTTGGAGCTCACTGCTGAAGTCATTCACTTGAATGCTGGCAACTACACGGTTTGGCATTTCAGGCGTCTTATCCTGGAATCACTTCAA
AGTGATCTGCAAGAGGAATTTAAATTCATTGAGCTTGTAGCTAAGGGCAGCTACAAGAATTACCAAATCTGgcatcatcgtcgatgggttgctgaaaaattgggaaccatagcaactaccagtgaactacagtttacacagaaagtgctatgccttgatgctaaaaattatcatgcttggtcacatcgacagTGGGCTCT
GCAAGCGTTGGGAGGATGGGAAAATGAGCTTGAATATTGTCGGGAGCTTCTAGAAGTTGACATATTTAACAACTCTGCTTGGAATCAGAGGTATTTTGTTATAACAAAGAGTCCCTTTTTGGGAGGTCTACAGGCTATGAGGGATTCTGAAGTAAGCTACTGCACTAATGCCATCTTAGGAAATCCTGACAATGAAAGTC
CATGGAGATATTTAAGAGGGCTTTACAAAGGAGATAATGAAGCTTTTGTTAATGATCCTGCTATTTACAAAGTATGTATTTGTGTGCTGGAAAAGAACAAAAACTGTGTTTTTGCTCTAAATCTCCTTTTAGATCTTTTATGTCACGGTTTTCAACCAACACCTGACCTGACTCAGATTGTAAGTACATGGGGGTTTTCT
GGTTCAGACCAAAAGTATGCTAACTTTGTGTGTTTGATGTTGGAGAAAGTTGATCCGATGCGTGCACGATATTGGATTTGGCGTAGAGACAGCCTTCCAAGTCATATTTGCTAAACTAGCCACTATTTATATTGAATGTCAGCCGTATATTTCAATAATGAAATTTACATGTTTGGTAATACATTAGAGGGAGG
Intron 3 GTAATGCGTC ... AGGTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.06 | 23 | 10 | 26 |
| A2 | 50 | 8 | 7 | 8 |
| A3 | 53.85 | 18 | 7 | 21 |
| A4 | 48 | 13 | 7 | 12 |
| A5 | 55.56 | 8 | 6 | 10 |
| A6 | 58.38 | 82 | 23 | 115 |
| A7 | 66.17 | 45 | 8 | 88 |
| A8 | 59.6 | 61 | 11 | 90 |
| A9 | 57.42 | 66 | 16 | 89 |
| A10 | 53.97 | 58 | 20 | 68 |
>TRINITY_DN113934_c0_g1_i2 from sample A1 / Example spliced isoformCGTGCCCTTTTGCTTTGTCTTTGGATCCAAAGAAAAACTGTGTTAGGCTTTGCATTCTTCTGCCCTTTTGCTTTTCTTGTGGGGCTTGTCTTTGGATCCCCCAAAAAATGTGTTATACTTGCATTCTTCGGTTGGACATTTCGTTGGGTTCCGTAGCATAGGAGGGCATAGAACACCCAGCAAGTTGTATTTTGACACAA
AGAAAATGGAGTCAGATGAGGACGAGGAAGTAGAGAGGGTTCCTCTCAGCCAGAGGCAGGAATGGAGTGATGTTGTGCCAATCCCTCAGGATGATGGTCCCGATCCAATTGTTTCAATTGCTTACACGGATGAATTCAGAGAAACCATGGACTACTTCAGAGCTGTTTTCGCTGCGGACGAGAGGAGTCCTCGGGCTTTG
GAGCTCACTGCTGAAGTCATTCACTTGAATGCTGGCAACTACACGGTTTGGCATTTCAGGCGTCTTATCCTGGAATCACTTCAAAGTGATCTGCAAGAGGAATTTAAATTCATTGAGCTTGTAGCTAAGGGCAGCTACAAGAATTACCAAATCTGGCATCATCGTCGATGGGTTGCTGAAAAATTGGGAACCATAGCAAC
TACCAGTGAACTACAGTTTACACAGAAAGTGCTATGCCTTGATGCTAAACATTATCATGCTTGGTCACATCGACAGTGGGCTCTGCAAGCGTTGGGAGGATGGGAAAATGAGCTTGAATATTGTCGGGAGCTTCTAGAAGTTGACATATTTAACAACTCTGCTTGGAATCAGGCTATGAGGGATTCTGAAGTAAGCTACT
GCACTAATGCCATCTTAGGAAATCCTGACAATGAAAGTCCATGGAGATATTTAAGAGGGCTTTACAAAGGAGATAATGAAGCTTTTGTTAATGATCCTGCTATTTACAAAGTATGTATTTGTGTGCTGGAAAAGAACAAAAACTGTGTTTTTGCTCTAAATCTCCTTTTAGATCTTTTATGTCACGGTTTTCAACCAACA
CCTGACCTGAATCAGATTCTAAGTACATGGGGGTTTTCTGGTTCAGACCAAAAGTATGCTAACTTTGTGTGTTTGATGTTGGAGAAAGTTGATCCGATGCGTGCACGATATTGGATTTGGCGTAGAGACAGCCTTCCAAGTCATATTTGCTAAACTAGCCACTATTTATATTGAATGTCAGCCGTATATTTCAATAATGA
AATTTACATGTTTGGTAATACATTAGAGGGAGTTTGATTTTCCCTATTGAATTG
>TRINITY_DN113934_c0_g1_i3 from sample A1 / Example unspliced isoform:CGTGCCCTTTTGCTTTGTCTTTGGATCCAAAGAAAAACTGTGTTAGGCTTTGCATTCTTCTGCCCTTTTGCTTTTCTTGTGGGGCTTGTCTTTGGATCCCCCAAAAAATGTGTTATACTTGCATTCTTCGGTTGGACATTTCGTTGGGTTCCGTAGCATAGGAGGGCATAGAACACCCAGCAAGTTGTATTTTGACACAA
AGAAAATGGAGTCAGATGAGGACGAGGAAGTAGAGAGGGTTCCTCTCAGCCAGAGGCAGGAATGGAGTGATGTTGTGCCAATCCCTCAGGATGATGGTCCCGATCCAATTGTTTCAATTGCTTACACGGATGAATTCAGAGAAACCATGGACTACTTCAGAGCTGTTTTCGCTGCGGACGAGAGGAGTCCTCGGGCTTTG
GAGCTCACTGCTGAAGTCATTCACTTGAATGCTGGCAACTACACGGTTTGGCATTTCAGGCGTCTTATCCTGGAATCACTTCAAAGTGATCTGCAAGAGGAATTTAAATTCATTGAGCTTGTAGCTAAGGGCAGCTACAAGAATTACCAAATCTGGCATCATCGTCGATGGGTTGCTGAAAAATTGGGAACCATAGCAAC
TACCAGTGAACTACAGTTTACACAGAAAGTGCTATGCCTTGATGCTAAACATTATCATGCTTGGTCACATCGACAGTGGGCTCTGCAAGCGTTGGGAGGATGGGAAAATGAGCTTGAATATTGTCGGGAGCTTCTAGAAGTTGACATATTTAACAACTCTGCTTGGAATCAGgtaatgcgtcttcaatggcttagcttaa
agttgtgtttctgtaaaataaattatttctttcaatttttatacgttgcaacttcggaaaatatgattcttttccctgatacgcttgtatttccttcagtgattagagttcaatgtttggatgcgattgcatgatttctgcctatcagcttttctgaaaatattaacaatgcaggatctttggatgccattgcatcattc
ctgcctatcagtatttctgaaaatattaacattgcaggatcttcgttcttcttgtttctgttcacggtttgtcctataagcaatctgtgagatagtcacagcattctgtaatctgccaacagtattttgtatttattatcaatccataaattatcaattttctgggtggttttgagcagaggtgacatacctagataatt
ttgatgtttcttacggctgcagaattttgattgaaagcttctagattgtatgtatagattaaaatttaatatttatttgctttcacgttttcctgcagaggtattttgttataacaaagagtccctttttgggaggtctacagGCTATGAGGGATTCTGAAGTAAGCTACTGCACTAATGCCATCTTAGGAAATCCTGAC
AATGAAAGTCCATGGAGATATTTAAGAGGGCTTTACAAAGGAGATAATGAAGCTTTTGTTAATGATCCTGCTATTTACAAAGTATGTATTTGTGTGCTGGAAAAGAACAAAAACTGTGTTTTTGCTCTAAATCTCCTTTTAGATCTTTTATGTCACGGTTTTCAACCAACACCTGACCTGAATCAGATTCTAAGTACATG
GGGGTTTTCTGGTTCAGACCAAAAGTATGCTAACTTTGTGTGTTTGATGTTGGAGAAAGTTGATCCGATGCGTGCACGATATTGGATTTGGCGTAGAGACAGCCTTCCAAGTCATATTTGCTAAACTAGCCACTATTTATATTGAATGTCAGCCGTATATTTCAATAATGAAATTTACATGTTTGGTAATACATTAGAGG
GAGTTTGATTTTCCCTATTGAATTG