sp|Q9C5S2|IRE1A_ARATH ----> Serine/threonine-protein kinase/endoribonuclease IRE1a
Intron 1 GTATGTGTAT ... TTTGGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 3 | 2 | 5 |
| A2 | 14.29 | 6 | 0 | 1 |
| A3 | 37.5 | 10 | 0 | 6 |
| A4 | 33.33 | 4 | 1 | 2 |
| A5 | 20 | 4 | 0 | 1 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 0 | 3 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 10 | 9 | 0 | 1 |
| A10 | 33.33 | 6 | 0 | 3 |
>TRINITY_DN112128_c0_g1_i2 from sample A1 / Example spliced isoformCATCAGTGGAGAGTTTGAAATAGGTTACAGAGATGTGAAAGAGGACCAATTTTTATTCTGTGGAAAAGACTGGAACTTGGATGCCTTTGACAAGCATTATGGGACAAATTTTCTTCCAAAGGCACCAGCAGAACTGGTTAACAGTACACCCCATTTATCACCAGATGGATCACTTATTCTCGGATCTAAAACAATGACAA
CGTTTCTTATTGATGCCAAGACTGGAAATATCATCCATAGATATGATTCAGGGGTTCCACTGTCCACAGATGAGGCAGACATGTTTTTTCATGATAATTCTGTGGTTTCTGATGAAAATGTTGGTAACAACAGTACAGAATCGGGAACTGTTGATTTTTCTTCTATTGAACCAATTTTTATCACACGGACAGATTATTTT
CTGCGGTCATACAAAGCAAACACTGCAAAAATTCAGTGGAATGTGAGCGTTGCTGAAATCGATGCCATTGGTGTTGGTTTTCCTGGGATCACTTCGGAAGTCGGTGTTAGATCACCAAATACCTTGACATATCCAATAAAGATAAAAGTATATCAAATGCTCCCATCTACAGGGACTGTGAATCATCAAAATGAATTTGT
CTTCCATCCAAGTTACAGGTTTGAAATTAATTATGATAAGAAGAGCATCCTCGCACTGCCTCCTGTTGAGAACATGCATATTGAGCTATTTAATCAAGAGAACAAAAAAGGTGTCTTATCAAATCAATTAGAAAACAGTCAAAACACTTGTGAATTTAAAAAGAACTGTTTAGCAGAGATTAAAAATGTTAAAAATCAGG
CAGATCAGTTCGTGTCTGGGGTCTCTGACAGACATTCAGGTTTCTCATTTGGTCTATGGACTGTGTTGGTTGCAACAGTATTATCTGTTGGGACTTATCTGATTTTTAGGAAAGGCAGAAATCAGAAGCAATTGAAGAAATTCAATGAGAAACAAGTCGGAAGCAGCAAGAAGAAAAAAGTACGTAAATTAAATAACAAT
AAAAATGGAACAAGTGATAGCAATAGCATTGAGAAACAGCATAAACTGGAAACTAAAGATTTGCAGACCACTGGCCTTACACTATCCCAGAACACCAGCAGTGAAACATTCAGAGTATTGGATCAAAGAAAAGAGGAACCTTGTCTTGGCACCGGGCGCTTGATTGGCAGATTGTTCATGTCTGATAGTGTCATTGATAA
TGGGAGTAATGGCACAATGATACTGGAAGGTTATTTTGATGGGAGAGATGTTGCAGTTAAACGCATTGTAAAGGCATATTATGAAGCGGCTTGGAAAGAGATTGAAAATCTAATTGCATCAGATCAACATCCAAACATTGTTAGATGGTATGGGGTGGAAACTGATGCAGATTTTGTTTATGTTGCTTTGGAGCGTTGCA
ACTGCAGCCTTAGTGATTTTGTTACGACTTTATCAAAATCTGTCCGGGATGACATGCATGCAAAGAATGAAACTACTAATGCCATACAGATGAAGAAGATTCAGCAGGTGTCTGGAATATGTGAAAAAATGAACATAAGTTTGTGGACTGACAATGGACGTGCTTCTCAACAACTGTTGAAATTGATGAGGGATGTTGTA
TCAGGTCTTTCACATCTACATGACTTGGGAATTATACATAGAGATCTGAAACCTCAAAACATATTGATAAGCAGTGGGAATGGTCTTTGTGCAAAACTTTCTGATATGGGCATAAGCAAGCGGCTAGTGAATGATGCATCTTCTCTGGGTCAACACACATCTGGTATTGGTAGTTCGGGGTGGCGAGCACCAGAACAACT
TCTTGATGGTCGTCAAACTCGAGCTATAGATTTATTCAGTCTAGGATGTGTTCTTTTCTTTTGCATCACTGGAGGTAAACATCCATTTGGTGCAGAGTATGAACGCGATGGGAACGTTGTGAGTGGTTGCTATGATCTTTTCCCAATTGAAGACATGCCTGAAGCTGTTGACCTTGTAACTCGCTTACTGGATAGTGCTG
CTGATCGAAGGCCCAGGGCAACAGAAGTTTTGCAGCATCCTTTCTTTTGGAGTTCAGAAAAGCGCCTTTCATTTCTTCGGGAAGCCAGTGATAGGGTGGAATTAGAGAATCGAGAACAACATTCTGACATTTTGCAGGCATTGGAAAGCGTTGGATCTCAAGCTATTGGTGGGACATGGGATGTTAAATTAGAGAATGGT
TTTCTTGAAAACATTGGCCGTTATCGTCGATATAAATTTGATAGTGTCCGTGACTTGCTTCGTGTCGTTCGGAATAAATTAAGCCATTACAGGGAACTCCCGAACGCTGTACAGGAGCTGCTTGGTACCATTCCCGAGGGATTTGAAAACTATTTTAGGAGCAGATTTCCAAGGCTACTTATTGAAGTCTACAAAGTTTT
TTCTGAACACTGCTCAGAAGAAGAATGTTTTAAAAAGTACTTCAAAAATTGTACAATTTGACAGATGTGAAGGCGTATTTCTGATGTCTGGCTGGCCTTGTACTTACAAAGGCGACTGCAATAGAGAGGGGATTGAGAACTAATTCAGGAGAAGGTTTCCAAGGCTACTTCATGATGTTTACAATGTTTTCTCTCAATAA
TGTAAGGAACAAGAGTCCTTTAGAGAGTACTTTTATACAACTTGAAATGTTGGAAGATGCATTTCTGTATTCATTCAAGGATCTGGCTAGACTTGTCGTCAGATAGCTTTATGAAAGCTTGCACTCGGAGAGCACAAACAAGGAAATTCATTATCCTATGCTTCACCATTATAAATATTTGCAGGCACTTTGTAAAAAAA
TTCTTCCTCTGCCTCGGTATTGAAAGAAAGGCAATGGGATTTGAAGCGTTATACTAAAATTCAACTGCATTGTAGTGTGCTATATTGGCATTGTACTTTGATCATGTATGTACATTAAAAGACTCAGAACCTTCTAATATTTATTTTGTAAGCATTGCCACCGTAATTTGTTATTTGCACCTGTAAGATTGGCATTTGAA
ATTGAAAAGACATTTGATCGGC
>TRINITY_DN112128_c0_g1_i4 from sample A1 / Example unspliced isoform:CATCAGTGGAGAGTTTGAAATAGGTTACAGAGATGTGAAAGAGGACCAATTTTTATTCTGTGGAAAAGACTGGAACTTGGATGCCTTTGACAAGCATTATGGGACAAATgtatgtgtatatgtttttgttgttttgtattgaaaatgcttatgtaacatatagattgatgccaaaattatcctttcttttgactgattta
ttatacttttggtatagTTTCTTCCAAAGGCACCAGCAGAACTGGTTAACAGTACACCCCATTTATCACCAGATGGATCACTTATTCTCGGATCTAAAACAATGACAACGTTTCTTATTGATGCCAAGACTGGAAATATCATCCATAGATATGATTCAGGGGTTCCACTGTCCACAGATGAGGCAGACATGTTTTTTCAT
GATAATTCTGTGGTTTCTGATGAAAATGTTGGTAACAACAGTACAGAATCGGGAACTGTTGATTTTTCTTCTATTGAACCAATTTTTATCACACGGACAGATTATTTTCTGCGGTCATACAAAGCAAACACTGCAAAAATTCAGTGGAATGTGAGCGTTGCTGAAATCGATGCCATTGGTGTTGGTTTTCCTGGGATCAC
TTCGGAAGTCGGTGTTAGATCACCAAATACCTTGACATATCCAATAAAGATAAAAGTATATCAAATGCTCCCATCTACAGGGACTGTGAATCATCAAAATGAATTTGTCTTCCATCCAAGTTACAGGTTTGAAATTAATTATGATAAGAAGAGCATCCTCGCACTGCCTCCTGTTGAGAACATGCATATTGAGCTATTTA
ATCAAGAGAACAAAAAAGGTGTCTTATCAAATCAATTAGAAAACAGTCAAAACACTTGTGAATTTAAAAAGAACTGTTTAGCAGAGATTAAAAATGTTAAAAATCAGGCAGATCAGTTCGTGTCTGGGGTCTCTGACAGACATTCAGGTTTCTCATTTGGTCTATGGACTGTGTTGGTTGCAACAGTATTATCTGTTGGG
ACTTATCTGATTTTTAGGAAAGGCAGAAATCAGAAGCAATTGAAGAAATTCAATGAGAAACAAGTCGGAAGCAGCAAGAAGAAAAAAGTACGTAAATTAAATAACAATAAAAATGGAACAAGTGATAGCAATAGCATTGAGAAACAGCATAAACTGGAAACTAAAGATTTGCAGACCACTGGCCTTACACTATCCCAGAA
CACCAGCAGTGAAACATTCAGAGTATTGGATCAAAGAAAAGAGGAACCTTGTCTTGGCACCGGGCGCTTGATTGGCAGATTGTTCATGTCTGATAGTGTCATTGATAATGGGAGTAATGGCACAATGATACTGGAAGGTTATTTTGATGGGAGAGATGTTGCAGTTAAACGCATTGTAAAGGCATATTATGAAGCGGCTT
GGAAAGAGATTGAAAATCTAATTGCATCAGATCAACATCCAAACATTGTTAGATGGTATGGGGTGGAAACTGATGCAGATTTTGTTTATGTTGCTTTGGAGCGTTGCAACTGCAGCCTTAGTGATTTTGTTACGACTTTATCAAAATCTGTCCGGGATGACATGCATGCAAAGAATGAAACTACTAATGCCATACAGATG
AAGAAGATTCAGCAGGTGTCTGGAATATGTGAAAAAATGAACATAAGTTTGTGGACTGACAATGGACGTGCTTCTCAACAACTGTTGAAATTGATGAGGGATGTTGTATCAGGTCTTTCACATCTACATGACTTGGGAATTATACATAGAGATCTGAAACCTCAAAACATATTGATAAGCAGTGGGAATGGTCTTTGTGC
AAAACTTTCTGATATGGGCATAAGCAAGCGGCTAGTGAATGATGCATCTTCTCTGGGTCAACACACATCTGGTATTGGTAGTTCGGGGTGGCGAGCACCAGAACAACTTCTTGATGGTCGTCAAACTCGAGCTATAGATTTATTCAGTCTAGGATGTGTTCTTTTCTTTTGCATCACTGGAGGTAAACATCCATTTGGTG
CAGAGTATGAACGCGATGGGAACGTTGTGAGTGGTTGCTATGATCTTTTCCCAATTGAAGACATGCCTGAAGCTGTTGACCTTGTAACTCGCTTACTGGATAGTGCTGCTGATCGAAGGCCCAGGGCAACAGAAGTTTTGCAGCATCCTTTCTTTTGGAGTTCAGAAAAGCGCCTTTCATTTCTTCGGGAAGCCAGTGAT
AGGGTGGAATTAGAGAATCGAGAACAACATTCTGACATTTTGCAGGCATTGGAAAGCGTTGGATCTCAAGCTATTGGTGGGACATGGGATGTTAAATTAGAGAATGGTTTTCTTGAAAACATTGGCCGTTATCGTCGATATAAATTTGATAGTGTCCGTGACTTGCTTCGTGTCGTTCGGAATAAATTAAGCCATTACAG
GGAACTCCCGAACGCTGTACAGGAGCTGCTTGGTACCATTCCCGAGGGATTTGAAAACTATTTTAGGAGCAGATTTCCAAGGCTACTTATTGAAGTCTACAAAGTTTTTTCTGAACACTGCTCAGAAGAAGAATGTTTTAAAAAGTACTTCAAAAATTGTACAATTTGACAGATGTGAAGGCGTATTTCTGATGTCTGGC
TGGCCTTGTACTTACAAAGGCGACTGCAATAGAGAGGGGATTGAGAACTAATTCAGGAGAAGGTTTCCAAGGCTACTTCATGATGTTTACAATGTTTTCTCTCAATAATGTAAGGAACAAGAGTCCTTTAGAGAGTACTTTTATACAACTTGAAATGTTGGAAGATGCATTTCTGTATTCATTCAAGGATCTGGCTAGAC
TTGTCGTCAGATAGCTTTATGAAAGCTTGCACTCGGAGAGCACAAACAAGGAAATTCATTATCCTATGCTTCACCATTATAAATATTTGCAGGCACTTTGTAAAAAAATTCTTCCTCTGCCTCGGTATTGAAAGAAAGGCAATGGGATTTGAAGCGTTATACTAAAATTCAACTGCATTGTAGTGTGCTATATTGGCATT
GTACTTTGATCATGTATGTACATTAAAAGACTCAGAACCTTCTAATATTTATTTTGTAAGCATTGCCACCGTAATTTGTTATTTGCACCTGTAAGATTGGCATTTGAAATTGAAAAGACATTTGATCGGC