sp|Q84JU6|HOS1_ARATH ----> E3 ubiquitin-protein ligase HOS1
Intron 1 GTATGTCCTA ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.32 | 49 | 102 | 47 |
| A2 | 59.4 | 27 | 50 | 29 |
| A3 | 54.01 | 43 | 69 | 32 |
| A4 | 58.21 | 42 | 83 | 34 |
| A5 | 64.8 | 22 | 49 | 32 |
| A6 | 68.42 | 3 | 8 | 5 |
| A7 | 48.09 | 34 | 35 | 28 |
| A8 | 62.96 | 5 | 10 | 7 |
| A9 | 59.6 | 20 | 39 | 20 |
| A10 | 61.36 | 17 | 44 | 10 |
>TRINITY_DN46674_c0_g3_i5 from sample A7 / Example spliced isoformATTGGGTTGAAAGTTTTTCCCTCTTCTCGTAAAATTACTTACTAAAACTCGGGCACTATTTCAATTTCTCTACGACAGTCGGATGAACGGGCCACAGGAAAACCGCCATGAATACCGCTCTCAGAGACGCCCCCAAGCTCGGCAGTTCCCAGCGCAAGCGTCGACTGGATGCATTGGAGCGCTTAGCAAACATTGATCCT
TTTGATCTATGCAGTGAGGCAAAAGTTGAAAAGTGCCGTGCCATAAGAGACTTGAGGAGCTGTGGGCGAGTTGTTCAGCACATTTTAACATCTTGTGGCCATGCATCTTTGTGTGTGGAATGTATTCAACGGTGTGATATGTCACAGATGTTTGTATGGATGAAAGTGCTGTTTCCAGCGATGCTATTGTAGCAATGCTT
CTCGATGGTGGAGTTGTAAAGGATTGGTGCAAGAGAACATTATTGAATGTCATATCTAGTCTGCCAGAAATTTATAATCTCGGGGTTCAATCAGATGTATTCAGTAAGTATACAACGCAACTCGATGCTATAGTCAATGTACTTGAAGTGTTAGAAGGATCACTTTTGGATTTACCTTCACCTCAATTGTTGGAGCTGCA
ACATCTTTTGGAGACTGCATCCAAAGTGAAACAACATTTGGAGGTAATGGCTTGGTGTGCAAGGCACAGCTTTCTTGAGGGTGTTCAATGTCGCTATATGGGCATCTCTCATTGGAGAAATTCTTTTCATGAGAGAAAGACTGCTGCATGTGAGCGAACTTGGCCTGATTATTCAAAAAATACATCACGGCTTGGGTCTC
AATCTCAAGCAACTTTGTTCATTGAGGATGCCTTGGCTAACCTGAGCATAGGGCAAGATTATGATGGAGAACTAGGAAAAGAGGCTCATGAACTAAGTTGGCTGCGGCAAGGAGGAAGTTTATCTCGGTTACCTTTCAAGGATGGACTGGATGGGCCTGCATACCCACCAGAAAATTTGCGTGCAGCTGTTGATCTTCTT
TTTCTAGAGGGAAGTTCAGGTCTCATCCTTGCGAAAAGAGCAATTTTTCTTTATTACTTATTTGATCGCCATTGGAACGTTCCAAACACGAATTGGAGAAATATAGTGGATGATTATGCTGGAACCTTTGGCATCACAAGAAATTTAGTTCTTGAATCATTAGTCTTTTATCTGTTGGACGACAATACAGAGGAGGCATT
AGAGGAAGCCTGTCATCTTCTTCCAGAAATTGTAAGTCCAACTACACATCCAAAAGTTGCTCGTGTTTTACTCGAAAGGAAAAAGCCGGATGCAGCTTTGATGGTTTTACGTTGCGCTGGACATGATGGTCAGTTTGGAATCACAGATTCTGGTTTCCAGAGGGCAGGTGTAGTTGCTCTTCCTGAGGCTGTGACAGCTG
TCAGAGTCAGGCTTGAGTGTGCACTTCTAACTGAAGCTTATCTTTATCAGAGAACACATTGCCTACGAGTCAAAGCAGAGCAATCAAAACACCGACAAATGACAGCTGGATCACATGGAGCAGAAGATATGAGTGGGTGTCGAGATTGGCTTACAGAAATGGAGATTCTAGTGGGTGAGATATGCTGGTTATGTATTAGA
AGAAATTTGGTTGATAGGATGATTGAGTTACCTTGGCACAGCGATGAGGAAAAGTTTTTGAAAAATTGTCTTTTAGAGAGAACGGTACAAGATTCTTCATCTTCTGCTGGCAATCTTCTGGTTGTCTTTTTCATCCAGGAAAAATGTATTGAGTTGCTACCAGAAATACAGCGTCGACAGCTAAAAAGTGGAATTGTTTC
TGAATATCCTGTTTCTACTTTGACAGTAGAGCAGTACCAACCTCTCGATATGGAGATAGAGCAAGCAATATTGTCCACTGTTTCTAACACATCTGCAAGCATAGTGCCACCATCAGTACTTCAACAGCCATTTGATGCAAAGAAGAGCAAACTTACTCAAAATAGTTCCATGAACTCAGATGATATACCTTCTGCTTCCA
CTTTGGGACGGGGTGATAATCGTCAGCCATGCTTTCTTCCTGTGAAACCATTCCGATCCACAGTGGGAAGTCCATCACTTAATCCAACATTAGACTCATCTCCACTGCTAAATGGGCAGTCTAAGCAAAAAGATCAGGAAAAGCCTGGTGTCAGTCCCATTCGGGGTCGGATATTGAACTATGACTTTGAGTCTGGGAAG
CCTTTGCATGAGAATGAATCAGCTGAGCAACATTCTTTTGTGTCAAATTATACATCCTCGCAGGAGGCAGG
>TRINITY_DN46674_c0_g3_i1 from sample A7 / Example unspliced isoform:ATTGGGTTGAAAGTTTTTCCCTCTTCTCGTAAAATTACTTACTAAAACTCGGGCACTATTTCAATTTCTCTACGACAGTCGGATGAACGGGCCACAGGAAAACCGCCATGAATACCGCTCTCAGAGACGCCCCCAAGCTCGGCAGTTCCCAGCGCAAGCGTCGACTGGATGCATTGGAGCGCTTAGCAAACATTGATCCT
TTTGATCTATGCAGTGAGGCAAAAGTTGAAAAGTGCCGTGCCATAAGAGACTTGAGGAGCTGTGGGCGAGTTGTTCAGCACATTTTAACATCTTGTGGCCATGCATCTTTGTGTGTGGAATGTATTCAACGGTGTGATgtatgtcctatctgtagggtttcaattccaaaacatgatgggactatgcgattacgtcttta
caatgaatgtcttgatgttggccttatctctagaaagtctgatgaaaattttaaggaaaggaaaggagatggccagtgttggacagaagatgttcagcatctttattctttgtttgatgttgccttggagaataatttgatatccctggtttgccattgtatcctttgtgggggacttaatgtgtttattcatgcaatta
ttttttgtgatttttatgtttagtatttttaaattataattacctttccagttcattccttatcatatttgcagATGTCACAGATGTTTGTATGGATGAAAGTGCTGTTTCCAGCGATGCTATTGTAGCAATGCTTCTCGATGGTGGAGTTGTAAAGGATTGGTGCAAGAGAACATTATTGAATGTCATATCTAGTCTGC
CAGAAATTTATAATCTCGGGGTTCAATCAGATGTATTCAGTAAGTATACAACGCAACTCGATGCTATAGTCAATGTACTTGAAGTGTTAGAAGGATCACTTTTGGATTTACCTTCACCTCAATTGTTGGAGCTGCAACATCTTTTGGAGACTGCATCCAAAGTGAAACAACATTTGGAGGTAATGGCTTGGTGTGCAAGG
CACAGCTTTCTTGAGGGTGTTCAATGTCGCTATATGGGCATCTCTCATTGGAGAAATTCTTTTCATGAGAGAAAGACTGCTGCATGTGAGCGAACTTGGCCTGATTATTCAAAAAATACATCACGGCTTGGGTCTCAATCTCAAGCAACTTTGTTCATTGAGGATGCCTTGGCTAACCTGAGCATAGGGCAAGATTATGA
TGGAGAACTAGGAAAAGAGGCTCATGAACTAAGTTGGCTGCGGCAAGGAGGAAGTTTATCTCGGTTACCTTTCAAGGATGGACTGGATGGGCCTGCATACCCACCAGAAAATTTGCGTGCAGCTGTTGATCTTCTTTTTCTAGAGGGAAGTTCAGGTCTCATCCTTGCGAAAAGAGCAATTTTTCTTTATTACTTATTTG
ATCGCCATTGGAACGTTCCAAACACGAATTGGAGAAATATAGTGGATGATTATGCTGGAACCTTTGGCATCACAAGAAATTTAGTTCTTGAATCATTAGTCTTTTATCTGTTGGACGACAATACAGAGGAGGCATTAGAGGAAGCCTGTCATCTTCTTCCAGAAATTGTAAGTCCAACTACACATCCAAAAGTTGCTCGT
GTTTTACTCGAAAGGAAAAAGCCGGATGCAGCTTTGATGGTTTTACGTTGCGCTGGACATGATGGTCAGTTTGGAATCACAGATTCTGGTTTCCAGAGGGCAGGTGTAGTTGCTCTTCCTGAGGCTGTGACAGCTGTCAGAGTCAGGCTTGAGTGTGCACTTCTAACTGAAGCTTATCTTTATCAGAGAACACATTGCCT
ACGAGTCAAAGCAGAGCAATCAAAACACCGACAAATGACAGCTGGATCACATGGAGCAGAAGATATGAGTGGGTGTCGAGATTGGCTTACAGAAATGGAGATTCTAGTGGGTGAGATATGCTGGTTATGTATTAGAAGAAATTTGGTCGATAGGATGATCGAGTTACCTTGGCACAGCGATGAGGAAAAGTTTTTGAAAA
ATTGTCTTTTAGAGAGAACGGTACAAGATTCTTCATCTTCTGCTGGCAATCTTCTGGTTGTCTTTTTCATCCAGCGATGCCGCTACCCTGAAGCATATCAGATTCATAAAAAGCTTTGTGACTTGGAAGAAAAAATCATATCCCAAAACATGGATAAGAAAATTGTTGAGAGGATTGAAAGTGCAAGTGAATGGAGACAA
CGGTTGATTGAAAAATGTATTGAGTTGCTACCAGAAATACAGCGTCGACAGCTAAAAAGTGGAATTGTTTCTGAATATCCTGTTTCTACTTTGACAGTAGAGCAGTACCAACCTCTCGATATGGAGATAGAGCAAGCAATATTGTCCACTGTTTCTAACACATCTGCAAGCATAGTGCCACCATCAGTACTTCAACAGCC
ATTTGATGCAAAGAAGAGCAAACTTACTCAAAATAGTTCCATGAACTCAGATGATATACCTTCTGCTTCCACTTTGGGACGGGGTGATAATCGTCAGCCATGCTTTCTTCCTGTGAAACCATTCCGATCCACAGTGGGAAGTCCATCACTTAATCCAACATTAGACTCATCTCCACTGCTAAATGGGCAGTCTAAGCAAA
AAGATCAGGAAAAGCCTGGTGTCAGTCCCATTCGGGGTCGGATATTGAACTATGACTTTGAGTCTGGGAAGCCTTTGCATGAGAATGAATCAGCTGAGCAACATTCTTTTGTGTCAAATTATACATCCTCGCAGGAGGCAGGTAATGTGGAGAAAGAAGTTGCTTATAGAATTCATTCAAAGGGGTTTTTCTCAGATTCA
TCTAATGAGACGAGGGGGCATGAAGTATTAATTAAGACACATAATGGAACTGGAAGTTCTAAACAAAATGGGTATTCCATTTCAGGAGCTGTTTCACCTGTGAAAGATGGGGACCAGGTGAGCCTTGAAAATGGTTTTCTTCATACACGAGACTTACCGACTACTTCAAGCTTTGATGCTCCATGTTCAAGTATAGTGAT
GTCGCAGGATAGATTGTCTGTTCCAAGTCGAACTGATTTGGACATCTCAGGCCTTCCCTTATCTAGCCCAGGATCAAGTGGAAAACGACTACCATCAGATCGTTCATGGCTGGCTAGTCCATCTGATGATGATTTTTGGAGGGGAAAAGGAGGAGGAACAGTTCCCAGCTTCTCATTTAGTGCAAAGAATCAGGAATTGC
CTCCATATTCTCATACTGATTCTTATCAAAGTCCAAATTCAGGGGTTGAAAGTCCAAAGCCAAATGGCGGTGTGAGATGGAGGTCAGATGAAGGAGAGGAGGAAGATGATCCGAGGCCTAAAAGTTCTGGAAGGTTAAAAGGTTCTTCTGGTACTAAAGGAAGAGGTATTGGCCGAAGCAGGTTTTATGCAAGTCACATT
TGATATCTTCTGATAATTTGTACCAATAAAATATGGGGTAGTCCAAATTTTATGTTGCTGGTATCCAGTTTTGGATTCTCCATTTCTTGTAGATTTAACATAATAGAAAGGCAAGAACAGGCTGCCCATAAGAGGATACATGCCTATTTCTAACTCGAAGATGCTACATGTGGTAGACATTCTTGAATATCAACCAATGT
TTCCAAGCAAATATCCAAGTATCAGCTAGATTCAAGTGTAGCTGATATTCTGCGAGTTCTTCCAAGTGCTGGGATATCATGTTTATCCTTGGTTGCAAAGCTCAAGGTCTAAATCTTTGCTTGAATGTCTTTGATTCTTCTGGAAGAGAAATTACTGTTTAATTATTGTACAACATCCTCGAGGATTTTATGAAAACCTG
GCTGCATTTGCCAGCAGAATCTCAGTTGTTTGTTCTGTGCATTGTAAATCTGTTCCACATGTTTGGCATTTACCTCAAAATGAGAAGTAAAATCAAAGTTTTGTAACGGGCTTTTGCAGAATTGCAGCACTGGAAGGTGACATGGGAATTTTCAATTAGATTGGTAGGCTAGATCCGGTTTTAACTTTTGATATCCCAAA
ATTTATGTTTTTGACTCAGAGTGGGAGCTCGGCAGATAAACTGAGGGTTTTTGGTTTAAGGTCAACTCTTGGTATATTCAATAAATAATTAGCAAGCATGGATCATTCAATTCTGTTTGATGTAAATGGAAATCAGTTTTTTGAAAGGATCAGTTATTCAGGGGACTAATTTTGACCGTATTCCTATGGGTTGGTGTGCT
GATTGATGATATTTCCCTTTCATTCTTGATGTTATGGTTGAAACTCTTTTGTCAGCTAGGTGTGCTGCTATTTCCACTCAACTGCTAGAAGAAGTTAGGATATAGATGCCCAAAATCAAAAGACATTGGATGTGCTATTCTGCTCCTTCGAGGCTTTTGTAAATGCAAGAAAATTACTGGAACAGTTACCCCAGGTTTTT
GTTTACATTGGCTGCTAGAAATGTTCTGGTAAGGAAAATACAAAACCAGCTTTCTGAATAATTTGATGCCACTTTAGGATAATGTGTTACCTGTGCAATATGGAATGAGAGTAATACTCTCACAATGTGGTTAATTTGAATTTGATGCATGTACACAAAATTATGACACTACAAGTGTCCCAATTCTAGTATTATTCTTT
TCCACGAGACATACGAGCATCTAAAACAAATATAC
Intron 2 GTATCCTTAA ... TCTGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.1 | 167 | 22.9 | 20.9 |
| A2 | 11.36 | 117 | 21.5 | 15 |
| A3 | 20.49 | 135 | 20.5 | 34.8 |
| A4 | 15.83 | 101 | 11.8 | 19 |
| A5 | 13.33 | 52 | 7.5 | 8 |
| A6 | 19.05 | 34 | 5 | 8 |
| A7 | 5.56 | 102 | 13.2 | 6 |
| A8 | 20.83 | 35 | 5.6 | 9.2 |
| A9 | 17.17 | 81 | 9.3 | 16.8 |
| A10 | 13.14 | 119 | 17.5 | 18 |
>TRINITY_DN116498_c1_g1_i7 from sample A3 / Example spliced isoformTCTAAATTGGGTTGAAAGTTTTTCCCTCTTCTCGTAAAATTACTTACTAAAACTCGGGCACTATTTCAATTTCTCTACGACAGTCGGATGAACGGGCCACAGGAAAACCGCCATGAATACCGCTCTCAGAGACGCCCCCAAGCTCGGCAGTTCCCAGCGCAAGCGTCGACTGGATGCATTGGAGCGCTTAGCAAACATTG
ATCCTTTTGATCTATGCAGTGAGGCAAAAGTTGAAAAGTGCCGTGCCATAAGAGACTTGAGGAGCTGTGGGCGAGTTGTTCAGCACATTTTAACATCTTGTGGCCATGCATCTTTGTGTGTGGAATGTATTCAACGGTGTGATGTATGTCCTATCTGTAGGGTTTCAATTCCAAAACATGATGGGACTATGCGATTACGT
CTTTACAATGAATGTCTTGATGTTGGCCTTATCTCTAGAAAGTCTGATGAAAATTTTAAGGAAAGGAAAGGAGATGGCCAGTGTTGGACAGAAGATGTTCAGCATCTTTATTCTTTGTTTGATGTTGCCTTGGAGAATAATTTGATATCCCTGGTTTGCCATTATGTCACAGATGTTTGTATGGATGAAAGTGCTGTTTC
CAGCGATGCTATTGTAGCAATGCTTCTCGATGGTGGAGTTGTAAAGGATTGGTGCAAGAGAACATTATTGAATGTCATATCTAGTCTGCCAGAAATTTATAATCTCGGGGTTCAATCAGATGTATTCAGTAAGTATACAACGCAACTCGATGCTATAGTCAATGTACTTGAAGTGTTAGAAGGATCACTTCTGGATTTAC
CTTCACCTCAATTGTTGGAGCTGCAACATCTTTTGGAGACTGCATCCAAAGTGAAACAACATTTGGAGGTAATGGCTTGGTGTGCAAGGCACAGCTTTCTTGAGGGTGTTCAATGTCGCTATATGGGCATCTCTCATTGGAGAAATTCTTTTCATGAGAGAAAGACTGCTGCATGTGAGCGAACTTGGCCTGATTATTCA
AAAAATACATCACGGCTTGGGTCTCAATCTCAAGCAACTTTGTTCATTGAGGATGCCTTGGCTAACCTGAGCATAGGGCAAGATTATGATGGAGAACTAGGAAAAGAGGCTCATGAACTAAGTTGGCTGCGGCAAGGAGGAAGTTTATCTCGGTTACCTTTCAAGGATGGACTGGATGGGCCTGCATACCCACCAGAAAA
TTTGCGTGCAGCTGTTGATCTTCTTTTTCTAGAGGGAAGTTCAGGTCTCATCCTTGCGAAAAGAGCAATTTTTCTTTATTACTTATTTGATCGCCATTGGAACGTTCCAAACACGAATTGGAGAAATATAGTGGATGATTATGCTGGAACCTTTGGCATCACAAGAAATTTAGTTCTTGAATCATTAGTCTTTTATCTGT
TGGACGACAATACAGAGGAGGCATTAGAGGAAGCCTGTCATCTTCTTCCAGAAATTGTAAGTCCAACTACACATCCAAAAGTTGCTCGTGTTTTACTCGAAAGGAAAAAGCCGGATGCAGCTTTGATGGTTTTACGTTGCGCTGGACATGATGGTCAGTTTGGAATCACAGATTCTGGTTTCCAGAGGGCAGGTGTAGTT
GCTCTTCCTGAGGCTGTGACAGCTGTCAGAGTCAGGCTTGAGTGTGCACTTCTAACTGAAGCTTATCTTTATCAGAGAACACATTGCCTACGAGTCAAAGCAGAGCAATCAAAACACCGACAAATGACAGCTGGATCACATGGAGCAGAAGATATGAGTGGGTGTCGAGATTGGCTTACAGAAATGGAGATTCTAGTGGG
TGAGATATGCTGGTTATGTATTAGAAGAAATTTGGTCGATAGGATGATCGAGTTACCTTGGCACAGCGATGAGGAAAAGTTTTTGAAAAATTGTCTTTTAGAGAGAACGGTACAAGATTCTTCATCTTCTGCTGGCAATCTTCTGGTTGTCTTTTTCATCCAGCGATGCCGCTACCCTGAAGCATATCAGATTCATAAAA
AGCTTTGCGACTTGGAAGAAAAAATCATATCCCAAAACATGGATAAGAAAATTGTTGAGAGGATTGAAAGTGCAAGTGAATGGAGACAACGGTTGATTGAGAAATGTATTGAGTTGCTACCAGAAATACAGCGTCGACAGCTAAAAAGTGGAATTGTTTCTGAATATCCTGTTTCTACTTTGACAGTAGAGCAGTACCAA
CCTCTCGATATGGAGATAGAGCAAGCAATATTGTCCACTGTTTCTAACACATCTGCAAGCATAGTGCCACCATCAGTACTTCAACAGCCATTTGATGCAAAGAAGAGCAAACTTACTCAAAATAGTTCCATGAACTCAGATGATATACCTTCTGCTTCCACTTTGGGACGGGGTGATAATCGTCAGCCATGCTTTCTTCC
TGTGAAACCATTCCGATCCACAGTGGGAAGTCCATCACTTAATCCAACATTAGACTCATCTCCACTGCTAAATGGGCAGTCTAAGCAAAAAGATCAGGAAAAGCCTGGTGTCAGTCCCATTCGGGGTCGGATATTGAACTATGACTTTGAGTCTGGGAAGCCTTTGCATGAGAATGAATCAGCTGAGCAACATTCTTTTG
TGTCAAATTATACATCCTCGCAGGAGGCAGGAGCTGTTTCACCTGTGAAAGATGGGGACCAGGTGAGCCTTGAAAATGGTTTTCTTCATACACGAGACTTACCGACTACTTCAAGCTTTGATGCTCCACGTTCAAGTATAGTGATGTCGCAGGATAGATTGTCTGTTCCAAGTCGAACTGATTTGGACATCTCAGGCCTT
CCCTTATCTAGCCCAGGATCAAGTGGAAAACGACTACCATCAGATCGTTCATGGCTGGCTAGTCCATCTGATGATGATTTTTGGAGGGGAAAAGGAGGAGGAACAGTTCCCAGCTTCTCATTTAGTGCAAAGAATCAGGAATTGTCTCCATATTCTCATACTGATTCTTATCAAAGTCCAAATTCAGGGGTTGAAAGTCC
AAAGCCAAATGGCGGTGTGAGATGGAGGTCAGATGAAGGAGAGGAGGAAGATGATCCGAGGCCTAAAAGTTCTGGAAGGTTAAAAGGTTCTTCTGGTACTAAAGGAAGAGGTATTGGCCGAAGCAGGTTTTATGCAAGTCACATTTGATATCTTCTGATAATTTGTACCAATAAAATATGGGGTAGTCCAAATTTTATGT
TGCTGGTATCCAGTTTTGGATTCTCCATTTCTTGTAGATTTAACATAATAGAAAGGCAAGAACAGGCTGCCCATAAGAGGATACATGCCTATTTCTAACTCGAAGATGCTACATGTGGTAGACATTCTTGAATATCAACCAATGTTTCCAAGCAAATATCCAAGTATCAGCTAGATTCAAGTGTAGCTGATATTCTGCGA
GTTCTTCCAAGTGCTGGGATATCATGTTTATCCTTGGTTGCAAAGCTCAAGGTCTAAATCTTTGCTTGAATGTCTTTGATTCTTCTGGAAGAGAAATTACTGTTTAATTATTGTACAACATCCTCGAGGATTTTATGAAAACCTGGCTGCATTTGCCAGCAGAATCTCAGTTGTTTGTTCTGTGCATTGTAAATCTGTTC
CACATGTTTGGCATTTACCTCAAAATGAGAAGTAAAATCAAAGTTTTGTAACGGGCTTTTGCAGAATTGCAGCACTGGAAGGTGACATGGGAATTTTCAATTAGATTGGTAGGCTAGATCCGGTTTTAACTTTTGATATCCCAAAATTTATGTTTTTGACTCAGAGTGGGGAGCTCGGCAGATAAACTGAGGGTTTTTGG
TTTAAGGTCAACTCTTGGTATATTCAATAAATAATTAGCAAGCATGGATCATTCAATTCTGTTTGATGTAAATGGAAATCAGTTTTTTGAAAGGATCAGTTATTCAGGGGACTAATTTTGAC
>TRINITY_DN116498_c1_g1_i1 from sample A3 / Example unspliced isoform:TCATCCTTGCGAAAAGAGCAATTgtatccttaaattgctttgatttttttgtttaactagtacatttttagtgatatagagttggaactcgttatatttttattaagtttaccttgattctgttttagTTTCTTTATTACTTATTTGATCGCCATTGGAACGTTCCAAACACGAATTGGAGAAATATAGTGGATGATTAT
GCTGGAACCTTTGGCATCACAAGAAATTTAGTTCTTGAATCATTAGTCTTTTATCTGTTGGACGACAATACAGAGGAGGCATTAGAGGAAGCCTGTCATCTTCTTCCAGAAATTGTAAGTCCAACTACACATCCAAAAGTTGCTCGTGTTTTACTCGAAAGGAAAAAGCCGGATGCAGCTTTGATGGTTTTACGTTGCGC
TGGACATGATGGTCAGTTTGGAATCACAGATTCTGGTTTCCAGAGGGCAGGTGTAGTTGCTCTTCCTGAGGCTGTGACAGCTGTCAGAGTCAGGCTTGAGTGTGCACTTCTAACTGAAGCTTATCTTTATCAGAGAACACATTGCCTACGAGTCAAAGCAGAGCAATCAAAACACCGACAAATGACAGCTGGATCACATG
GAGCAGAAGATATGAGTGGGTGTCGAGATTGGCTTACAGAAATGGAGATTCTAGTGGGTGAGATATGCTGGTTATGTATTAGAAGAAATTTGGTCGATAGGATGATCGAGTTACCTTGGCACAGCGATGAGGAAAAGTTTTTGAAAAATTGTCTTTTAGAGAGAACGGTACAAGATTCTTCATCTTCTGCTGGCAATCTT
CTGGTTGTCTTTTTCATCCAGGTACATAACTGGTGGCCACTATGTTTGCAAAGATACATGTAAAATGCACAAGGATCTGATAAAACTGTACAGAAAATTTGTCAGTGCTCTTAATGTTTTTC
Intron 3 GTATCCTTTG ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.78 | 112 | 48 | 47 |
| A2 | 23.14 | 98 | 30 | 29 |
| A3 | 23.13 | 103 | 30 | 32 |
| A4 | 24.18 | 116 | 40 | 34 |
| A5 | 33.33 | 61 | 29 | 32 |
| A6 | 35.71 | 9 | 5 | 5 |
| A7 | 23.96 | 73 | 18 | 28 |
| A8 | 31.91 | 16 | 8 | 7 |
| A9 | 28.46 | 44 | 15 | 20 |
| A10 | 22.96 | 52 | 21 | 10 |
>TRINITY_DN116498_c1_g1_i7 from sample A3 / Example spliced isoformTCTAAATTGGGTTGAAAGTTTTTCCCTCTTCTCGTAAAATTACTTACTAAAACTCGGGCACTATTTCAATTTCTCTACGACAGTCGGATGAACGGGCCACAGGAAAACCGCCATGAATACCGCTCTCAGAGACGCCCCCAAGCTCGGCAGTTCCCAGCGCAAGCGTCGACTGGATGCATTGGAGCGCTTAGCAAACATTG
ATCCTTTTGATCTATGCAGTGAGGCAAAAGTTGAAAAGTGCCGTGCCATAAGAGACTTGAGGAGCTGTGGGCGAGTTGTTCAGCACATTTTAACATCTTGTGGCCATGCATCTTTGTGTGTGGAATGTATTCAACGGTGTGATGTATGTCCTATCTGTAGGGTTTCAATTCCAAAACATGATGGGACTATGCGATTACGT
CTTTACAATGAATGTCTTGATGTTGGCCTTATCTCTAGAAAGTCTGATGAAAATTTTAAGGAAAGGAAAGGAGATGGCCAGTGTTGGACAGAAGATGTTCAGCATCTTTATTCTTTGTTTGATGTTGCCTTGGAGAATAATTTGATATCCCTGGTTTGCCATTATGTCACAGATGTTTGTATGGATGAAAGTGCTGTTTC
CAGCGATGCTATTGTAGCAATGCTTCTCGATGGTGGAGTTGTAAAGGATTGGTGCAAGAGAACATTATTGAATGTCATATCTAGTCTGCCAGAAATTTATAATCTCGGGGTTCAATCAGATGTATTCAGTAAGTATACAACGCAACTCGATGCTATAGTCAATGTACTTGAAGTGTTAGAAGGATCACTTCTGGATTTAC
CTTCACCTCAATTGTTGGAGCTGCAACATCTTTTGGAGACTGCATCCAAAGTGAAACAACATTTGGAGGTAATGGCTTGGTGTGCAAGGCACAGCTTTCTTGAGGGTGTTCAATGTCGCTATATGGGCATCTCTCATTGGAGAAATTCTTTTCATGAGAGAAAGACTGCTGCATGTGAGCGAACTTGGCCTGATTATTCA
AAAAATACATCACGGCTTGGGTCTCAATCTCAAGCAACTTTGTTCATTGAGGATGCCTTGGCTAACCTGAGCATAGGGCAAGATTATGATGGAGAACTAGGAAAAGAGGCTCATGAACTAAGTTGGCTGCGGCAAGGAGGAAGTTTATCTCGGTTACCTTTCAAGGATGGACTGGATGGGCCTGCATACCCACCAGAAAA
TTTGCGTGCAGCTGTTGATCTTCTTTTTCTAGAGGGAAGTTCAGGTCTCATCCTTGCGAAAAGAGCAATTTTTCTTTATTACTTATTTGATCGCCATTGGAACGTTCCAAACACGAATTGGAGAAATATAGTGGATGATTATGCTGGAACCTTTGGCATCACAAGAAATTTAGTTCTTGAATCATTAGTCTTTTATCTGT
TGGACGACAATACAGAGGAGGCATTAGAGGAAGCCTGTCATCTTCTTCCAGAAATTGTAAGTCCAACTACACATCCAAAAGTTGCTCGTGTTTTACTCGAAAGGAAAAAGCCGGATGCAGCTTTGATGGTTTTACGTTGCGCTGGACATGATGGTCAGTTTGGAATCACAGATTCTGGTTTCCAGAGGGCAGGTGTAGTT
GCTCTTCCTGAGGCTGTGACAGCTGTCAGAGTCAGGCTTGAGTGTGCACTTCTAACTGAAGCTTATCTTTATCAGAGAACACATTGCCTACGAGTCAAAGCAGAGCAATCAAAACACCGACAAATGACAGCTGGATCACATGGAGCAGAAGATATGAGTGGGTGTCGAGATTGGCTTACAGAAATGGAGATTCTAGTGGG
TGAGATATGCTGGTTATGTATTAGAAGAAATTTGGTCGATAGGATGATCGAGTTACCTTGGCACAGCGATGAGGAAAAGTTTTTGAAAAATTGTCTTTTAGAGAGAACGGTACAAGATTCTTCATCTTCTGCTGGCAATCTTCTGGTTGTCTTTTTCATCCAGCGATGCCGCTACCCTGAAGCATATCAGATTCATAAAA
AGCTTTGCGACTTGGAAGAAAAAATCATATCCCAAAACATGGATAAGAAAATTGTTGAGAGGATTGAAAGTGCAAGTGAATGGAGACAACGGTTGATTGAGAAATGTATTGAGTTGCTACCAGAAATACAGCGTCGACAGCTAAAAAGTGGAATTGTTTCTGAATATCCTGTTTCTACTTTGACAGTAGAGCAGTACCAA
CCTCTCGATATGGAGATAGAGCAAGCAATATTGTCCACTGTTTCTAACACATCTGCAAGCATAGTGCCACCATCAGTACTTCAACAGCCATTTGATGCAAAGAAGAGCAAACTTACTCAAAATAGTTCCATGAACTCAGATGATATACCTTCTGCTTCCACTTTGGGACGGGGTGATAATCGTCAGCCATGCTTTCTTCC
TGTGAAACCATTCCGATCCACAGTGGGAAGTCCATCACTTAATCCAACATTAGACTCATCTCCACTGCTAAATGGGCAGTCTAAGCAAAAAGATCAGGAAAAGCCTGGTGTCAGTCCCATTCGGGGTCGGATATTGAACTATGACTTTGAGTCTGGGAAGCCTTTGCATGAGAATGAATCAGCTGAGCAACATTCTTTTG
TGTCAAATTATACATCCTCGCAGGAGGCAGGAGCTGTTTCACCTGTGAAAGATGGGGACCAGGTGAGCCTTGAAAATGGTTTTCTTCATACACGAGACTTACCGACTACTTCAAGCTTTGATGCTCCACGTTCAAGTATAGTGATGTCGCAGGATAGATTGTCTGTTCCAAGTCGAACTGATTTGGACATCTCAGGCCTT
CCCTTATCTAGCCCAGGATCAAGTGGAAAACGACTACCATCAGATCGTTCATGGCTGGCTAGTCCATCTGATGATGATTTTTGGAGGGGAAAAGGAGGAGGAACAGTTCCCAGCTTCTCATTTAGTGCAAAGAATCAGGAATTGTCTCCATATTCTCATACTGATTCTTATCAAAGTCCAAATTCAGGGGTTGAAAGTCC
AAAGCCAAATGGCGGTGTGAGATGGAGGTCAGATGAAGGAGAGGAGGAAGATGATCCGAGGCCTAAAAGTTCTGGAAGGTTAAAAGGTTCTTCTGGTACTAAAGGAAGAGGTATTGGCCGAAGCAGGTTTTATGCAAGTCACATTTGATATCTTCTGATAATTTGTACCAATAAAATATGGGGTAGTCCAAATTTTATGT
TGCTGGTATCCAGTTTTGGATTCTCCATTTCTTGTAGATTTAACATAATAGAAAGGCAAGAACAGGCTGCCCATAAGAGGATACATGCCTATTTCTAACTCGAAGATGCTACATGTGGTAGACATTCTTGAATATCAACCAATGTTTCCAAGCAAATATCCAAGTATCAGCTAGATTCAAGTGTAGCTGATATTCTGCGA
GTTCTTCCAAGTGCTGGGATATCATGTTTATCCTTGGTTGCAAAGCTCAAGGTCTAAATCTTTGCTTGAATGTCTTTGATTCTTCTGGAAGAGAAATTACTGTTTAATTATTGTACAACATCCTCGAGGATTTTATGAAAACCTGGCTGCATTTGCCAGCAGAATCTCAGTTGTTTGTTCTGTGCATTGTAAATCTGTTC
CACATGTTTGGCATTTACCTCAAAATGAGAAGTAAAATCAAAGTTTTGTAACGGGCTTTTGCAGAATTGCAGCACTGGAAGGTGACATGGGAATTTTCAATTAGATTGGTAGGCTAGATCCGGTTTTAACTTTTGATATCCCAAAATTTATGTTTTTGACTCAGAGTGGGGAGCTCGGCAGATAAACTGAGGGTTTTTGG
TTTAAGGTCAACTCTTGGTATATTCAATAAATAATTAGCAAGCATGGATCATTCAATTCTGTTTGATGTAAATGGAAATCAGTTTTTTGAAAGGATCAGTTATTCAGGGGACTAATTTTGAC
>TRINITY_DN116498_c1_g1_i6 from sample A3 / Example unspliced isoform:TCTAAATTGGGTTGAAAGTTTTTCCCTCTTCTCGTAAAATTACTTACTAAAACTCGGGCACTATTTCAATTTCTCTACGACAGTCGGATGAACGGGCCACAGGAAAACCGCCATGAATACCGCTCTCAGAGACGCCCCCAAGCTCGGCAGTTCCCAGCGCAAGCGTCGACTGGATGCATTGGAGCGCTTAGCAAACATTG
ATCCTTTTGATCTATGCAGTGAGGCAAAAGTTGAAAAGTGCCGTGCCATAAGAGACTTGAGGAGCTGTGGGCGAGTTGTTCAGCACATTTTAACATCTTGTGGCCATGCATCTTTGTGTGTGGAATGTATTCAACGGTGTGATGTATGTCCTATCTGTAGGGTTTCAATTCCAAAACATGATGGGACTATGCGATTACGT
CTTTACAATGAATGTCTTGATGTTGGCCTTATCTCTAGAAAGTCTGATGAAAATTTTAAGGAAAGGAAAGGAGATGGCCAGTGTTGGACAGAAGATGTTCAGCATCTTTATTCTTTGTTTGATGTTGCCTTGGAGAATAATTTGATATCCCTGGTTTGCCATTgtatcctttgtgggggacttaatgtgtttattcatgc
aattattttttgtgatttttatgtttagtatttttaaattataattacctttccagttcattccttatcatatttgcagATGTCACAGATGTTTGTATGGATGAAAGTGCTGTTTCCAGCGATGCTATTGTAGCAATGCTTCTCGATGGTGGAGTTGTAAAGGATTGGTGCAAGAGAACATTATTGAATGTCATATCTAG
TCTGCCAGAAATTTATAATCTCGGGGTTCAATCAGATGTATTCAGTAAGTATACAACGCAACTCGATGCTATAGTCAATGTACTTGAAGTGTTAGAAGGATCACTTCTGGATTTACCTTCACCTCAATTGTTGGAGCTGCAACATCTTTTGGAGACTGCATCCAAAGTGAAACAACATTTGGAGGTAATGGCTTGGTGTG
CAAGGCACAGCTTTCTTGAGGGTGTTCAATGTCGCTATATGGGCATCTCTCATTGGAGAAATTCTTTTCATGAGAGAAAGACTGCTGCATGTGAGCGAACTTGGCCTGATTATTCAAAAAATACATCACGGCTTGGGTCTCAATCTCAAGCAACTTTGTTCATTGAGGATGCCTTGGCTAACCTGAGCATAGGGCAAGAT
TATGATGGAGAACTAGGAAAAGAGGCTCATGAACTAAGTTGGCTGCGGCAAGGAGGAAGTTTATCTCGGTTACCTTTCAAGGATGGACTGGATGGGCCTGCATACCCACCAGAAAATTTGCGTGCAGCTGTTGATCTTCTTTTTCTAGAGGGAAGTTCAGGTCTCATCCTTGCGAAAAGAGCAATTTTTCTTTATTACTT
ATTTGATCGCCATTGGAACGTTCCAAACACGAATTGGAGAAATATAGTGGATGATTATGCTGGAACCTTTGGCATCACAAGAAATTTAGTTCTTGAATCATTAGTCTTTTATCTGTTGGACGACAATACAGAGGAGGCATTAGAGGAAGCCTGTCATCTTCTTCCAGAAATTGTAAGTCCAACTACACATCCAAAAGTTG
CTCGTGTTTTACTCGAAAGGAAAAAGCCGGATGCAGCTTTGATGGTTTTACGTTGCGCTGGACATGATGGTCAGTTTGGAATCACAGATTCTGGTTTCCAGAGGGCAGGTGTAGTTGCTCTTCCTGAGGCTGTGACAGCTGTCAGAGTCAGGCTTGAGTGTGCACTTCTAACTGAAGCTTATCTTTATCAGAGAACACAT
TGCCTACGAGTCAAAGCAGAGCAATCAAAACACCGACAAATGACAGCTGGATCACATGGAGCAGAAGATATGAGTGGGTGTCGAGATTGGCTTACAGAAATGGAGATTCTAGTGGGTGAGATATGCTGGTTATGTATTAGAAGAAATTTGGTCGATAGGATGATCGAGTTACCTTGGCACAGCGATGAGGAAAAGTTTTT
GAAAAATTGTCTTTTAGAGAGAACGGTACAAGATTCTTCATCTTCTGCTGGCAATCTTCTGGTTGTCTTTTTCATCCAGCGATGCCGCTACCCTGAAGCATATCAGATTCATAAAAAGCTTTGCGACTTGGAAGAAAAAATCATATCCCAAAACATGGATAAGAAAATTGTTGAGAGGATTGAAAGTGCAAGTGAATGGA
GACAACGGTTGATTGAGAAATGTATTGAGTTGCTACCAGAAATACAGCGTCGACAGCTAAAAAGTGGAATTGTTTCTGAATATCCTGTTTCTACTTTGACAGTAGAGCAGTACCAACCTCTCGATATGGAGATAGAGCAAGCAATATTGTCCACTGTTTCTAACACATCTGCAAGCATAGTGCCACCATCAGTACTTCAA
CAGCCATTTGATGCAAAGAAGAGCAAACTTACTCAAAATAGTTCCATGAACTCAGATGATATACCTTCTGCTTCCACTTTGGGACGGGGTGATAATCGTCAGCCATGCTTTCTTCCTGTGAAACCATTCCGATCCACAGTGGGAAGTCCATCACTTAATCCAACATTAGACTCATCTCCACTGCTAAATGGGCAGTCTAA
GCAAAAAGATCAGGAAAAGCCTGGTGTCAGTCCCATTCGGGGTCGGATATTGAACTATGACTTTGAGTCTGGGAAGCCTTTGCATGAGAATGAATCAGCTGAGCAACATTCTTTTGTGTCAAATTATACATCCTCGCAGGAGGCAGGTAATGTGGAGAAAGAAGTTGCTTATAGAATTCATTCAAAGGGGTTTTTCTCAG
ATTCATCTAATGAGATGAGGGGGCATGAAGTATTAATTAAGACACATAATGGAACTGGAAGTTCTAAACAAAATGGGTATTCCATTTCAGGAGCTGTTTCACCTGTGAAAGATGGGGACCAGGTGAGCCTTGAAAATGGTTTTCTTCATACACGAGACTTACCGACTACTTCAAGCTTTGATGCTCCACGTTCAAGTATA
GTGATGTCGCAGGATAGATTGTCTGTTCCAAGTCGAACTGATTTGGACATCTCAGGCCTTCCCTTATCTAGCCCAGGATCAAGTGGAAAACGACTACCATCAGATCGTTCATGGCTGGCTAGTCCATCTGATGATGATTTTTGGAGGGGAAAAGGAGGAGGAACAGTTCCCAGCTTCTCATTTAGTGCAAAGAATCAGGA
ATTGTCTCCATATTCTCATACTGATTCTTATCAAAGTCCAAATTCAGGGGTTGAAAGTCCAAAGCCAAATGGCGGTGTGAGATGGAGGTCAGATGAAGGAGAGGAGGAAGATGATCCGAGGCCTAAAAGTTCTGGAAGGTTAAAAGGTTCTTCTGGTACTAAAGGAAGAGGTATTGGCCGAAGCAGGTTTTATGCAAGTC
ACATTTGATATCTTCTGATAATTTGTACCAATAAAATATGGGGTAGTCCAAATTTTATGTTGCTGGTATCCAGTTTTGGATTCTCCATTTCTTGTAGATTTAACATAATAGAAAGGCAAGAACAGGCTGCCCATAAGAGGATACATGCCTATTTCTAACTCGAAGATGCTACATGTGGTAGACATTCTTGAATATCAACC
AATGTTTCCAAGCAAATATCCAAGTATCAGCTAGATTCAAGTGTAGCTGATATTCTGCGAGTTCTTCCAAGTGCTGGGATATCATGTTTATCCTTGGTTGCAAAGCTCAAGGTCTAAATCTTTGCTTGAATGTCTTTGATTCTTCTGGAAGAGAAATTACTGTTTAATTATTGTACAACATCCTCGAGGATTTTATGAAA
ACCTGGCTGCATTTGCCAGCAGAATCTCAGTTGTTTGTTCTGTGCATTGTAAATCTGTTCCACATGTTTGGCATTTACCTCAAAATGAGAAGTAAAATCAAAGTTTTGTAACGGGCTTTTGCAGAATTGCAGCACTGGAAGGTGACATGGGAATTTTCAATTAGATTGGTAGGCTAGATCCGGTTTTAACTTTTGATATC
CCAAAATTTATGTTTTTGACTCAGAGTGGGGAGCTCGGCAGATAAACTGAGGGTTTTTGGTTTAAGGTCAACTCTTGGTATATTCAATAAATAATTAGCAAGCATGGATCATTCAATTCTGTTTGATGTAAATGGAAATCAGTTTTTTGAAAGGATCAGTTATTCAGGGGACTAATTTTGAC
Intron 4 GTAATGTGGA ... TCCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.7 | 54 | 97 | 77 |
| A2 | 65.51 | 42.4 | 86 | 75 |
| A3 | 77.27 | 25 | 105 | 65 |
| A4 | 75.56 | 28.3 | 90 | 85 |
| A5 | 68.14 | 18 | 38 | 39 |
| A6 | 62.79 | 72.3 | 130 | 114 |
| A7 | 65.81 | 106.7 | 206.8 | 204 |
| A8 | 65.32 | 91.7 | 155 | 190.4 |
| A9 | 72.82 | 67.8 | 170 | 193 |
| A10 | 62.86 | 91 | 183 | 125 |
>TRINITY_DN116498_c1_g1_i7 from sample A3 / Example spliced isoformTCTAAATTGGGTTGAAAGTTTTTCCCTCTTCTCGTAAAATTACTTACTAAAACTCGGGCACTATTTCAATTTCTCTACGACAGTCGGATGAACGGGCCACAGGAAAACCGCCATGAATACCGCTCTCAGAGACGCCCCCAAGCTCGGCAGTTCCCAGCGCAAGCGTCGACTGGATGCATTGGAGCGCTTAGCAAACATTG
ATCCTTTTGATCTATGCAGTGAGGCAAAAGTTGAAAAGTGCCGTGCCATAAGAGACTTGAGGAGCTGTGGGCGAGTTGTTCAGCACATTTTAACATCTTGTGGCCATGCATCTTTGTGTGTGGAATGTATTCAACGGTGTGATGTATGTCCTATCTGTAGGGTTTCAATTCCAAAACATGATGGGACTATGCGATTACGT
CTTTACAATGAATGTCTTGATGTTGGCCTTATCTCTAGAAAGTCTGATGAAAATTTTAAGGAAAGGAAAGGAGATGGCCAGTGTTGGACAGAAGATGTTCAGCATCTTTATTCTTTGTTTGATGTTGCCTTGGAGAATAATTTGATATCCCTGGTTTGCCATTATGTCACAGATGTTTGTATGGATGAAAGTGCTGTTTC
CAGCGATGCTATTGTAGCAATGCTTCTCGATGGTGGAGTTGTAAAGGATTGGTGCAAGAGAACATTATTGAATGTCATATCTAGTCTGCCAGAAATTTATAATCTCGGGGTTCAATCAGATGTATTCAGTAAGTATACAACGCAACTCGATGCTATAGTCAATGTACTTGAAGTGTTAGAAGGATCACTTCTGGATTTAC
CTTCACCTCAATTGTTGGAGCTGCAACATCTTTTGGAGACTGCATCCAAAGTGAAACAACATTTGGAGGTAATGGCTTGGTGTGCAAGGCACAGCTTTCTTGAGGGTGTTCAATGTCGCTATATGGGCATCTCTCATTGGAGAAATTCTTTTCATGAGAGAAAGACTGCTGCATGTGAGCGAACTTGGCCTGATTATTCA
AAAAATACATCACGGCTTGGGTCTCAATCTCAAGCAACTTTGTTCATTGAGGATGCCTTGGCTAACCTGAGCATAGGGCAAGATTATGATGGAGAACTAGGAAAAGAGGCTCATGAACTAAGTTGGCTGCGGCAAGGAGGAAGTTTATCTCGGTTACCTTTCAAGGATGGACTGGATGGGCCTGCATACCCACCAGAAAA
TTTGCGTGCAGCTGTTGATCTTCTTTTTCTAGAGGGAAGTTCAGGTCTCATCCTTGCGAAAAGAGCAATTTTTCTTTATTACTTATTTGATCGCCATTGGAACGTTCCAAACACGAATTGGAGAAATATAGTGGATGATTATGCTGGAACCTTTGGCATCACAAGAAATTTAGTTCTTGAATCATTAGTCTTTTATCTGT
TGGACGACAATACAGAGGAGGCATTAGAGGAAGCCTGTCATCTTCTTCCAGAAATTGTAAGTCCAACTACACATCCAAAAGTTGCTCGTGTTTTACTCGAAAGGAAAAAGCCGGATGCAGCTTTGATGGTTTTACGTTGCGCTGGACATGATGGTCAGTTTGGAATCACAGATTCTGGTTTCCAGAGGGCAGGTGTAGTT
GCTCTTCCTGAGGCTGTGACAGCTGTCAGAGTCAGGCTTGAGTGTGCACTTCTAACTGAAGCTTATCTTTATCAGAGAACACATTGCCTACGAGTCAAAGCAGAGCAATCAAAACACCGACAAATGACAGCTGGATCACATGGAGCAGAAGATATGAGTGGGTGTCGAGATTGGCTTACAGAAATGGAGATTCTAGTGGG
TGAGATATGCTGGTTATGTATTAGAAGAAATTTGGTCGATAGGATGATCGAGTTACCTTGGCACAGCGATGAGGAAAAGTTTTTGAAAAATTGTCTTTTAGAGAGAACGGTACAAGATTCTTCATCTTCTGCTGGCAATCTTCTGGTTGTCTTTTTCATCCAGCGATGCCGCTACCCTGAAGCATATCAGATTCATAAAA
AGCTTTGCGACTTGGAAGAAAAAATCATATCCCAAAACATGGATAAGAAAATTGTTGAGAGGATTGAAAGTGCAAGTGAATGGAGACAACGGTTGATTGAGAAATGTATTGAGTTGCTACCAGAAATACAGCGTCGACAGCTAAAAAGTGGAATTGTTTCTGAATATCCTGTTTCTACTTTGACAGTAGAGCAGTACCAA
CCTCTCGATATGGAGATAGAGCAAGCAATATTGTCCACTGTTTCTAACACATCTGCAAGCATAGTGCCACCATCAGTACTTCAACAGCCATTTGATGCAAAGAAGAGCAAACTTACTCAAAATAGTTCCATGAACTCAGATGATATACCTTCTGCTTCCACTTTGGGACGGGGTGATAATCGTCAGCCATGCTTTCTTCC
TGTGAAACCATTCCGATCCACAGTGGGAAGTCCATCACTTAATCCAACATTAGACTCATCTCCACTGCTAAATGGGCAGTCTAAGCAAAAAGATCAGGAAAAGCCTGGTGTCAGTCCCATTCGGGGTCGGATATTGAACTATGACTTTGAGTCTGGGAAGCCTTTGCATGAGAATGAATCAGCTGAGCAACATTCTTTTG
TGTCAAATTATACATCCTCGCAGGAGGCAGGAGCTGTTTCACCTGTGAAAGATGGGGACCAGGTGAGCCTTGAAAATGGTTTTCTTCATACACGAGACTTACCGACTACTTCAAGCTTTGATGCTCCACGTTCAAGTATAGTGATGTCGCAGGATAGATTGTCTGTTCCAAGTCGAACTGATTTGGACATCTCAGGCCTT
CCCTTATCTAGCCCAGGATCAAGTGGAAAACGACTACCATCAGATCGTTCATGGCTGGCTAGTCCATCTGATGATGATTTTTGGAGGGGAAAAGGAGGAGGAACAGTTCCCAGCTTCTCATTTAGTGCAAAGAATCAGGAATTGTCTCCATATTCTCATACTGATTCTTATCAAAGTCCAAATTCAGGGGTTGAAAGTCC
AAAGCCAAATGGCGGTGTGAGATGGAGGTCAGATGAAGGAGAGGAGGAAGATGATCCGAGGCCTAAAAGTTCTGGAAGGTTAAAAGGTTCTTCTGGTACTAAAGGAAGAGGTATTGGCCGAAGCAGGTTTTATGCAAGTCACATTTGATATCTTCTGATAATTTGTACCAATAAAATATGGGGTAGTCCAAATTTTATGT
TGCTGGTATCCAGTTTTGGATTCTCCATTTCTTGTAGATTTAACATAATAGAAAGGCAAGAACAGGCTGCCCATAAGAGGATACATGCCTATTTCTAACTCGAAGATGCTACATGTGGTAGACATTCTTGAATATCAACCAATGTTTCCAAGCAAATATCCAAGTATCAGCTAGATTCAAGTGTAGCTGATATTCTGCGA
GTTCTTCCAAGTGCTGGGATATCATGTTTATCCTTGGTTGCAAAGCTCAAGGTCTAAATCTTTGCTTGAATGTCTTTGATTCTTCTGGAAGAGAAATTACTGTTTAATTATTGTACAACATCCTCGAGGATTTTATGAAAACCTGGCTGCATTTGCCAGCAGAATCTCAGTTGTTTGTTCTGTGCATTGTAAATCTGTTC
CACATGTTTGGCATTTACCTCAAAATGAGAAGTAAAATCAAAGTTTTGTAACGGGCTTTTGCAGAATTGCAGCACTGGAAGGTGACATGGGAATTTTCAATTAGATTGGTAGGCTAGATCCGGTTTTAACTTTTGATATCCCAAAATTTATGTTTTTGACTCAGAGTGGGGAGCTCGGCAGATAAACTGAGGGTTTTTGG
TTTAAGGTCAACTCTTGGTATATTCAATAAATAATTAGCAAGCATGGATCATTCAATTCTGTTTGATGTAAATGGAAATCAGTTTTTTGAAAGGATCAGTTATTCAGGGGACTAATTTTGAC
>TRINITY_DN116498_c1_g1_i3 from sample A3 / Example unspliced isoform:TCTAAATTGGGTTGAAAGTTTTTCCCTCTTCTCGTAAAATTACTTACTAAAACTCGGGCACTATTTCAATTTCTCTACGACAGTCGGATGAACGGGCCACAGGAAAACCGCCATGAATACCGCTCTCAGAGACGCCCCCAAGCTCGGCAGTTCCCAGCGCAAGCGTCGACTGGATGCATTGGAGCGCTTAGCAAACATTG
ATCCTTTTGATCTATGCAGTGAGGCAAAAGTTGAAAAGTGCCGTGCCATAAGAGACTTGAGGAGCTGTGGGCGAGTTGTTCAGCACATTTTAACATCTTGTGGCCATGCATCTTTGTGTGTGGAATGTATTCAACGGTGTGATGTATGTCCTATCTGTAGGGTTTCAATTCCAAAACATGATGGGACTATGCGATTACGT
CTTTACAATGAATGTCTTGATGTTGGCCTTATCTCTAGAAAGTCTGATGAAAATTTTAAGGAAAGGAAAGGAGATGGCCAGTGTTGGACAGAAGATGTTCAGCATCTTTATTCTTTGTTTGATGTTGCCTTGGAGAATAATTTGATATCCCTGGTTTGCCATTATGTCACAGATGTTTGTATGGATGAAAGTGCTGTTTC
CAGCGATGCTATTGTAGCAATGCTTCTCGATGGTGGAGTTGTAAAGGATTGGTGCAAGAGAACATTATTGAATGTCATATCTAGTCTGCCAGAAATTTATAATCTCGGGGTTCAATCAGATGTATTCAGTAAGTATACAACGCAACTCGATGCTATAGTCAATGTACTTGAAGTGTTAGAAGGATCACTTCTGGATTTAC
CTTCACCTCAATTGTTGGAGCTGCAACATCTTTTGGAGACTGCATCCAAAGTGAAACAACATTTGGAGGTAATGGCTTGGTGTGCAAGGCACAGCTTTCTTGAGGGTGTTCAATGTCGCTATATGGGCATCTCTCATTGGAGAAATTCTTTTCATGAGAGAAAGACTGCTGCATGTGAGCGAACTTGGCCTGATTATTCA
AAAAATACATCACGGCTTGGGTCTCAATCTCAAGCAACTTTGTTCATTGAGGATGCCTTGGCTAACCTGAGCATAGGGCAAGATTATGATGGAGAACTAGGAAAAGAGGCTCATGAACTAAGTTGGCTGCGGCAAGGAGGAAGTTTATCTCGGTTACCTTTCAAGGATGGACTGGATGGGCCTGCATACCCACCAGAAAA
TTTGCGTGCAGCTGTTGATCTTCTTTTTCTAGAGGGAAGTTCAGGTCTCATCCTTGCGAAAAGAGCAATTTTTCTTTATTACTTATTTGATCGCCATTGGAACGTTCCAAACACGAATTGGAGAAATATAGTGGATGATTATGCTGGAACCTTTGGCATCACAAGAAATTTAGTTCTTGAATCATTAGTCTTTTATCTGT
TGGACGACAATACAGAGGAGGCATTAGAGGAAGCCTGTCATCTTCTTCCAGAAATTGTAAGTCCAACTACACATCCAAAAGTTGCTCGTGTTTTACTCGAAAGGAAAAAGCCGGATGCAGCTTTGATGGTTTTACGTTGCGCTGGACATGATGGTCAGTTTGGAATCACAGATTCTGGTTTCCAGAGGGCAGGTGTAGTT
GCTCTTCCTGAGGCTGTGACAGCTGTCAGAGTCAGGCTTGAGTGTGCACTTCTAACTGAAGCTTATCTTTATCAGAGAACACATTGCCTACGAGTCAAAGCAGAGCAATCAAAACACCGACAAATGACAGCTGGATCACATGGAGCAGAAGATATGAGTGGGTGTCGAGATTGGCTTACAGAAATGGAGATTCTAGTGGG
TGAGATATGCTGGTTATGTATTAGAAGAAATTTGGTCGATAGGATGATCGAGTTACCTTGGCACAGCGATGAGGAAAAGTTTTTGAAAAATTGTCTTTTAGAGAGAACGGTACAAGATTCTTCATCTTCTGCTGGCAATCTTCTGGTTGTCTTTTTCATCCAGCGATGCCGCTACCCTGAAGCATATCAGATTCATAAAA
AGCTTTGCGACTTGGAAGAAAAAATCATATCCCAAAACATGGATAAGAAAATTGTTGAGAGGATTGAAAGTGCAAGTGAATGGAGACAACGGTTGATTGAGAAATGTATTGAGTTGCTACCAGAAATACAGCGTCGACAGCTAAAAAGTGGAATTGTTTCTGAATATCCTGTTTCTACTTTGACAGTAGAGCAGTACCAA
CCTCTCGATATGGAGATAGAGCAAGCAATATTGTCCACTGTTTCTAACACATCTGCAAGCATAGTGCCACCATCAGTACTTCAACAGCCATTTGATGCAAAGAAGAGCAAACTTACTCAAAATAGTTCCATGAACTCAGATGATATACCTTCTGCTTCCACTTTGGGACGGGGTGATAATCGTCAGCCATGCTTTCTTCC
TGTGAAACCATTCCGATCCACAGTGGGAAGTCCATCACTTAATCCAACATTAGACTCATCTCCACTGCTAAATGGGCAGTCTAAGCAAAAAGATCAGGAAAAGCCTGGTGTCAGTCCCATTCGGGGTCGGATATTGAACTATGACTTTGAGTCTGGGAAGCCTTTGCATGAGAATGAATCAGCTGAGCAACATTCTTTTG
TGTCAAATTATACATCCTCGCAGGAGGCAGgtaatgtggagaaagaagttgcttatagaattcattcaaaggggtttttctcagattcatctaatgagatgagggggcatgaagtattaattaagacacataatggaactggaagttctaaacaaaatgggtattccatttcagGAGCTGTTTCACCTGTGAAAGATGGG
GACCAGGTGAGCCTTGAAAATGGTTTTCTTCATACACGAGACTTACCGACTACTTCAAGCTTTGATGCTCCACGTTCAAGTATAGTGATGTCGCAGGATAGATTGTCTGTTCCAAGTCGAACTGATTTGGACATCTCAGGCCTTCCCTTATCTAGCCCAGGATCAAGTGGAAAACGACTACCATCAGATCGTTCATGGCT
GGCTAGTCCATCTGATGATGATTTTTGGAGGGGAAAAGGAGGAGGAACAGTTCCCAGCTTCTCATTTAGTGCAAAGAATCAGGAATTGTCTCCATATTCTCATACTGATTCTTATCAAAGTCCAAATTCAGGGGTTGAAAGTCCAAAGCCAAATGGCGGTGTGAGATGGAGGTCAGATGAAGGAGAGGAGGAAGATGATC
CGAGGCCTAAAAGTTCTGGAAGGTTAAAAGGTTCTTCTGGTACTAAAGGAAGAGGTATTGGCCGAAGCAGGTTTTATGCAAGTCACATTTGATATCTTCTGATAATTTGTACCAATAAAATATGGGGTAGTCCAAATTTTATGTTGCTGGTATCCAGTTTTGGATTCTCCATTTCTTGTAGATTTAACATAATAGAAAGG
CAAGAACAGGCTGCCCATAAGAGGATACATGCCTATTTCTAACTCGAAGATGCTACATGTGGTAGACATTCTTGAATATCAACCAATGTTTCCAAGCAAATATCCAAGTATCAGCTAGATTCAAGTGTAGCTGATATTCTGCGAGTTCTTCCAAGTGCTGGGATATCATGTTTATCCTTGGTTGCAAAGCTCAAGGTCTA
AATCTTTGCTTGAATGTCTTTGATTCTTCTGGAAGAGAAATTACTGTTTAATTATTGTACAACATCCTCGAGGATTTTATGAAAACCTGGCTGCATTTGCCAGCAGAATCTCAGTTGTTTGTTCTGTGCATTGTAAATCTGTTCCACATGTTTGGCATTTACCTCAAAATGAGAAGTAAAATCAAAGTTTTGTAACGGGC
TTTTGCAGAATTGCAGCACTGGAAGGTGACATGGGAATTTTCAATTAGATTGGTAGGCTAGATCCGGTTTTAACTTTTGATATCCCAAAATTTATGTTTTTGACTCAGAGTGGGGAGCTCGGCAGATAAACTGAGGGTTTTTGGTTTAAGGTCAACTCTTGGTATATTCAATAAATAATTAGCAAGCATGGATCATTCAA
TTCTGTTTGATGTAAATGGAAATCAGTTTTTTGAAAGGATCAGTTATTCAGGGGACTAATTTTGAC