sp|B7FA90|HPT1_ORYSJ ----> Probable homogentisate phytyltransferase 1, chloroplastic
Intron 1 GTACCTTTGA ... ATTGCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52 | 6 | 5 | 8 |
| A2 | 39.13 | 14 | 4 | 14 |
| A3 | 63.64 | 4 | 5 | 9 |
| A4 | 53.85 | 6 | 2 | 12 |
| A5 | 56.52 | 5 | 5 | 8 |
| A6 | 50.77 | 16 | 12 | 21 |
| A7 | 50 | 21 | 15 | 27 |
| A8 | 46.15 | 7 | 5 | 7 |
| A9 | 55.81 | 19 | 10 | 38 |
| A10 | 59.38 | 13 | 11 | 27 |
>TRINITY_DN103772_c0_g1_i2 from sample A2 / Example spliced isoformTTTATGGTACCGTTTTAATAAACTAACGTAGTTGTCTCCCAGTCCAGGAATCAGCCTGGAACTGCAGCGTGTAGCAAGTTCATTTCAAAGCACTGTATCTGTAGTTCTCGGGATTCGGGATTAAGCACAGAACAGCTTAGAATCTGCAGGTCCACAAGCGATTTCCTTTTGTTTTGAGAATGGAGAGGGCATGCGGGTTC
AGCTCTGTAATTTGTGTTGGAGAAAACTTCATGCAACGACAAAGAAACGGCAAAGATTGCCGCTGCCCAACTCCAGAGACCGGAGAGAATGCAGTAAATCTCCATAGATTATATTTGAATGGAGGTTCATGCAGACCCACAATGGAAATGCAATGTATTGGGACAAAAGGACTGATAGTGTTATCTCGAAAAGTGATGCT
GAATCATAGTAGTATTCTGGGTAGACACGATGACAGATGGTCACTGAGAGCCCAATCTACTAGATTGTTTTCTGCAGCAAGCATCAAATACAAAGGCATTTATCAAAGTGAAAAAAGAAGGTTAATTAGTTATGCAACATCAAAGCCTGTCAATACTGATTCATATGCTGCTGATTCTTTGCCTATCAATAACAAAGACA
AGATCAACAAGCCATATCTTCCACTTGCTTCTGGTGAATTTTCTATAGGAGCTGCTGTGGTGATTGTGACAGCCTTTGCTTTCATGAGTCTTGGTATGGGATTGATGTTTGGATCAATACCTTTGCTTTGGGCTCTCTTCACAAGTTTTGTACTTGGAACTGCATACTCAATTGATTTACCATTCTTAAGATGGAAACGA
TCTGCTATGGCTGCTGCAAGCTGCATTTTATGTGTGAGGGCAGTTGTAGTTCAAGTTGCCTTTTACTTGCATATACAGAGTTCCGTTTACAAGAGACCTGCAATCTTGACCAAGCCTCTGATATTCGCTACAGCTTTTATGTGCTTCTTCTCAGTTGTAATTGCGCTTTTCAAGGATATACCAGATGTGGATGGAGACAG
AATCTTTGGCATTCAATCTTTCAGTGTCCGTCTGGGTCAAAAGCGGGTGTTTTGGCTTTGTATATATTTACTGCTGGCTGCATACAGTATTGCCATGATCATGGGAGTTGTTTCTTCATTCATGTGGAGCAAACTTGCAATGGTGTCCGGCCATGCTGTGCTGGCTACTATTCTTTGGCGCAAAGCGCTAGCCATGGACC
TCAAGAGCAAAGTAGCAGTTACCTCTTTTTATATGTTTATATGGAAGCTTTTCTATGCAGAGTATTTACTTATTCCATTTATGAGATGATGGAAATGGGTTCTCTGTAATTTAATTATTTTACATGCTAACCTTCCTAAAC
>TRINITY_DN103772_c0_g1_i1 from sample A2 / Example unspliced isoform:TTTATGGTACCGTTTTAATAAACTAACGTAGTTGTCTCCCAGTCCAGGAATCAGCCTGGAACTGCAGCGTGTAGCAAGTTCATTTCAAAGCACTGTATCTGTAGTTCTCGGGATTCGGGATTAAGCACAGAACAGCTTAGAATCTGCAGGTCCACAAGCGATTTCCTTTTGTTTTGAGAATGGAGAGGGCATGCGGGTTC
AGCTCTGTAATTTGTGTTGGAGAAAACTTCATGCAACGACAAAGAAACGGCAAAGATTGCCGCTGCCCAACTCCAGAGACCGGAGAGAATGCAGTAAATCTCCATAGATTATATTTGAATGGAGGTTCATGCAGACCCACAATGGAAATGCAATGTATTGGGACAAAAGGACTGATAGTGTTATCTCGAAAAGTGATGCT
GAATCATAGTAGTATTCTGGGTAGACACGATGACAGATGGTCACTGAGAGCCCAATCTACTAGATTGTTTTCTGCAGCAAGCATCAAATACAAAGGCATTTATCAAAGTGAAAAAAGAAGGTTAATTAGTTATGCAACATCAAAGCCTGTCAATACTGATTCATATGCTGCTGATTCTTTGCCTATCAATAACAAAGgta
cctttgagacgttgtgggatgttttcaatgcattttaccgtttttcacggcctcacacagtgataggcacagtaataggaatagtttctgtttctcttctggctgttcaaagtgtgctagatctttctccaatgttttttgttggacttttaaaggccctaataccagctctctttatgaatatttatattgtgggattg
aatcaaatatctgacattgcaatagACAAGATCAACAAGCCATATCTTCCACTTGCTTCTGGTGAATTTTCTATAGGAGCTGCTGTGGTGATTGTGACAGCCTTTGCTTTCATGAGTCTTGGTATGGGATTGATGTTTGGATCAATACCTTTGCTTTGGGCTCTCTTCACAAGTTTTGTACTTGGAACTGCATACTCAAT
TGATTTACCATTCTTAAGATGGAAACGATCTGCTATGGCTGCTGCAAGCTGCATTTTATGTGTGAGGGCAGTTGTAGTTCAAGTTGCCTTTTACTTGCATATACAGAGTTCCGTTTACAAGAGACCTGCAATCTTGACCAAGCCTCTGATATTCGCTACAGCTTTTATGTGCTTCTTCTCAGTTGTAATTGCGCTTTTCA
AGGATATACCAGATGTGGATGGAGACAGAATCTTTGGCATTCAATCTTTCAGTGTCCGTCTGGGTCAAAAGCGGGTGTTTTGGCTTTGTATATATTTACTGCTGGCTGCATACAGTATTGCCATGATCATGGGAGTTGTTTCTTCATTCATGTGGAGCAAACTTGCAATGGTGTCCGGCCATGCTGTGCTGGCTACTATT
CTTTGGCGCAAAGCGCTAGCCATGGACCTCAAGAGCAAAGTAGCAGTTACCTCTTTTTATATGTTTATATGGAAGCTTTTCTATGCAGAGTATTTACTTATTCCATTTATGAGATGATGGAAATGGGTTCTCTGTAATTTAATTATTTTACATGCTAACCTTCCTAAAC
Intron 2 GTAATAGGAA ... ATTGCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 6 | 7 | 8 |
| A2 | 45.1 | 14 | 9 | 14 |
| A3 | 52.94 | 4 | 0 | 9 |
| A4 | 63.64 | 6 | 9 | 12 |
| A5 | 50 | 5 | 2 | 8 |
| A6 | 47.54 | 16 | 8 | 21 |
| A7 | 46.15 | 21 | 9 | 27 |
| A8 | 46.15 | 7 | 5 | 7 |
| A9 | 54.76 | 19 | 8 | 38 |
| A10 | 57.38 | 13 | 8 | 27 |
>TRINITY_DN103772_c0_g1_i2 from sample A2 / Example spliced isoformTTTATGGTACCGTTTTAATAAACTAACGTAGTTGTCTCCCAGTCCAGGAATCAGCCTGGAACTGCAGCGTGTAGCAAGTTCATTTCAAAGCACTGTATCTGTAGTTCTCGGGATTCGGGATTAAGCACAGAACAGCTTAGAATCTGCAGGTCCACAAGCGATTTCCTTTTGTTTTGAGAATGGAGAGGGCATGCGGGTTC
AGCTCTGTAATTTGTGTTGGAGAAAACTTCATGCAACGACAAAGAAACGGCAAAGATTGCCGCTGCCCAACTCCAGAGACCGGAGAGAATGCAGTAAATCTCCATAGATTATATTTGAATGGAGGTTCATGCAGACCCACAATGGAAATGCAATGTATTGGGACAAAAGGACTGATAGTGTTATCTCGAAAAGTGATGCT
GAATCATAGTAGTATTCTGGGTAGACACGATGACAGATGGTCACTGAGAGCCCAATCTACTAGATTGTTTTCTGCAGCAAGCATCAAATACAAAGGCATTTATCAAAGTGAAAAAAGAAGGTTAATTAGTTATGCAACATCAAAGCCTGTCAATACTGATTCATATGCTGCTGATTCTTTGCCTATCAATAACAAAGACA
AGATCAACAAGCCATATCTTCCACTTGCTTCTGGTGAATTTTCTATAGGAGCTGCTGTGGTGATTGTGACAGCCTTTGCTTTCATGAGTCTTGGTATGGGATTGATGTTTGGATCAATACCTTTGCTTTGGGCTCTCTTCACAAGTTTTGTACTTGGAACTGCATACTCAATTGATTTACCATTCTTAAGATGGAAACGA
TCTGCTATGGCTGCTGCAAGCTGCATTTTATGTGTGAGGGCAGTTGTAGTTCAAGTTGCCTTTTACTTGCATATACAGAGTTCCGTTTACAAGAGACCTGCAATCTTGACCAAGCCTCTGATATTCGCTACAGCTTTTATGTGCTTCTTCTCAGTTGTAATTGCGCTTTTCAAGGATATACCAGATGTGGATGGAGACAG
AATCTTTGGCATTCAATCTTTCAGTGTCCGTCTGGGTCAAAAGCGGGTGTTTTGGCTTTGTATATATTTACTGCTGGCTGCATACAGTATTGCCATGATCATGGGAGTTGTTTCTTCATTCATGTGGAGCAAACTTGCAATGGTGTCCGGCCATGCTGTGCTGGCTACTATTCTTTGGCGCAAAGCGCTAGCCATGGACC
TCAAGAGCAAAGTAGCAGTTACCTCTTTTTATATGTTTATATGGAAGCTTTTCTATGCAGAGTATTTACTTATTCCATTTATGAGATGATGGAAATGGGTTCTCTGTAATTTAATTATTTTACATGCTAACCTTCCTAAAC
>TRINITY_DN103772_c0_g1_i3 from sample A2 / Example unspliced isoform:TTTATGGTACCGTTTTAATAAACTAACGTAGTTGTCTCCCAGTCCAGGAATCAGCCTGGAACTGCAGCGTGTAGCAAGTTCATTTCAAAGCACTGTATCTGTAGTTCTCGGGATTCGGGATTAAGCACAGAACAGCTTAGAATCTGCAGGTCCACAAGCGATTTCCTTTTGTTTTGAGAATGGAGAGGGCATGCGGGTTC
AGCTCTGTAATTTGTGTTGGAGAAAACTTCATGCAACGACAAAGAAACGGCAAAGATTGCCGCTGCCCAACTCCAGAGACCGGAGAGAATGCAGTAAATCTCCATAGATTATATTTGAATGGAGGTTCATGCAGACCCACAATGGAAATGCAATGTATTGGGACAAAAGGACTGATAGTGTTATCTCGAAAAGTGATGCT
GAATCATAGTAGTATTCTGGGTAGACACGATGACAGATGGTCACTGAGAGCCCAATCTACTAGATTGTTTTCTGCAGCAAGCATCAAATACAAAGGCATTTATCAAAGTGAAAAAAGAAGGTTAATTAGTTATGCAACATCAAAGCCTGTCAATACTGATTCATATGCTGCTGATTCTTTGCCTATCAATAACAAAGgta
ataggaatagtttctgtttctcttctggctgttcaaagtgtgctagatctttctccaatgttttttgttggacttttaaaggccctaataccagctctctttatgaatatttatattgtgggattgaatcaaatatctgacattgcaatagACAAGATCAACAAGCCATATCTTCCACTTGCTTCTGGTGAATTTTCTAT
AGGAGCTGCTGTGGTGATTGTGACAGCCTTTGCTTTCATGAGTCTTGGTATGGGATTGATGTTTGGATCAATACCTTTGCTTTGGGCTCTCTTCACAAGTTTTGTACTTGGAACTGCATACTCAATTGATTTACCATTCTTAAGATGGAAACGATCTGCTATGGCTGCTGCAAGCTGCATTTTATGTGTGAGGGCAGTTG
TAGTTCAAGTTGCCTTTTACTTGCATATACAGAGTTCCGTTTACAAGAGACCTGCAATCTTGACCAAGCCTCTGATATTCGCTACAGCTTTTATGTGCTTCTTCTCAGTTGTAATTGCGCTTTTCAAGGATATACCAGATGTGGATGGAGACAGAATCTTTGGCATTCAATCTTTCAGTGTCCGTCTGGGTCAAAAGCGG
GTGTTTTGGCTTTGTATATATTTACTGCTGGCTGCATACAGTATTGCCATGATCATGGGAGTTGTTTCTTCATTCATGTGGAGCAAACTTGCAATGGTGTCCGGCCATGCTGTGCTGGCTACTATTCTTTGGCGCAAAGCGCTAGCCATGGACCTCAAGAGCAAAGTAGCAGTTACCTCTTTTTATATGTTTATATGGAA
GCTTTTCTATGCAGAGTATTTACTTATTCCATTTATGAGATGATGGAAATGGGTTCTCTGTAATTTAATTATTTTACATGCTAACCTTCCTAAAC