NA ----> NA

Intron 1 GTCTGAGGTG ... TGTTTGTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	38.46	4	2	3
A2	83.33	2	9	11
A3	67.74	5	13	8
A4	60	2	4	2
A5	60	1	1	2
A6	61.9	8	13	13
A7	52.48	24	26	27
A8	75	10	27	33
A9	53.06	23	25	27
A10	46.88	34	28	32

>TRINITY_DN38443_c0_g1_i7 from sample A6 / Example spliced isoform

AGATCTTCAAGTCCAAAACCTTTCCTTTCTTTTCTTATATGATAAACATTGTGGACGGATTATCGGGCAATTAACTAATATCTCTTCGCGTGTCCATGCACAGAATGAGAAAGAGTTACGAACAAGCAAACTTTCACTTTTGTCGGAGAAAATACTGGACTTGAGGCGTATTCGACATCGTTGCTTGAAGCTGGAGCAAA
GAGGGCCCGAATTGAGCTTGCAAATTTTGATGAAAGAAGACGAAATACGGAGTATTGAAGCCAAAAATGAGCAGCTGAACTCAAAGCTCAGGGAAGTAACTCGCGAGGTTTACGAGGCAGATGAAGAGAGAAACCAGAATCAGAAATATTATGAGCTTCAGAAACAGGAAATGCAAAAGTTCGTGCAAGAGTTTGAACAG
CGTTGGTCAATCTTAAGCTCGAATCAGCAGTGAGAGAAGTGCACAATACCAACAGATCTGTCTCCAGAAATGACGGTGAGAGTGCTTTTCAGTTTGTTGGTAGAGCAAAACTCTTCACAACAGAAAGGGAGCTTCCTAGCAGCTTGTCCTCTAGCCACTCGTTGAGAAGCTTTTTAGAGGCACAACTGGAGAGTACTCTT
ATTTCTCAAGATGAAGAGAGGAAGAAACTTTTGAAAGTTATGCAAAATCAAATAATTGACAATGGGCTTTTGCAAAGAGAGATCCAGGACCTTGAAGAAAAAGTGTTTGAAGTGATGAGAAGGCGAGATGAAAGGAAAAAGTCAGTTCTATCTTATCTGTACTTTTACTATTCCAACTCTCTTTTATCATCACATATTAC
CTTCTTTCACATGAAATAATCTTGAATGATAAAACAGATTGCTTCCTTGATGTTGCTTTTCTTTAAGTAATCTATTATTCCATACAAATAAATACATTATGGTGTATATGGAGGAAAAGCTGCATCATTCTATTTATAATCTGCTCCTCTCTGTATTGTATATGTCAGAAGTATGCATAATTGTACACAACTCTTCCCAG
CCAGAAAGGATGTGAGGAACCAAACTTTTGTCATCATAGTAGTGGATAGTAGCCCACTTAGGAATCAGGATTGGGATTAAAACATTGAACAGTGGAGTCAAGAATCACGTCAAAATTTTCCATCCTTGTTTGAAGTATGAGAATGTTCCTAAATTTTACTGCTGGGAATGTTTTGAAAACTTATTTTCAGAACTCATAGT
ATTTTGAAACGAATGGCACATTTCCTTCTCTCCATCTTAGACAAAACCCATACAATATCACACAATCCTTTGGTGTAATGTATTTGCTTTGAAATCAGTACAT

>TRINITY_DN38443_c0_g1_i8 from sample A6 / Example unspliced isoform:

GCGGGGTGGAAACGGAACTTTTTAATGTGGAAACCGGGGATCGAACAGCTAGGCATTCACCAAAACGAGATTCTATTTACAACATGCAACCTTCTCTTCACTATGGCTTTGCCAAAACGATTCGATTCTCGGTTGCTTCAAATGGAACGCACCAGAAATCAAAGGCTTCAAGATCTTCAAAATGAGAAAGAGTTACGAAC
AAGCAAACTTTCACTTTTGTCGGAGAAAATACTGGACTTGAGGCGTATTCGACATCGTTGCTTGAAGCTGGAGCAAAGAGGGCCCGAATTGAGCTTGCAAATTTTGATGAAAGAAGACGAAATACGGAGTATTGAAGCCAAAAATGAGCAGCTGAACTCAAAGCTCAGGGAAGTAACTCGCGAGGTTTACGAGGCAGATG
AAGAGAGAAACCAGAATCAGAAATATTATGAGCTTCAGAAACAGGAAATGCAAAAGTTCGTGCAAGAGTTTGAACAGCGTTGGTCAATCTTAAGgtctgaggtggaaagtctggaaaaaattgtttgtcagCTCGAATCAGCAGTGAGAGAAGTGCACGATACCAACAGATGTGTCTCCAGAAATGATGGTGAGAGTGCT
TTTCAGTTTGTTGGTAGAGCAAAACTCTTCACAACAGAAAGTGAGCTTACTAGCAGCTTGTCCTCTAGCCACTCGTTGAGAAGCTTTTTAGAGGCACAACTGGAGAGTACTCTTATTTCTCAAGATGAAGAGAGGAAGAAACTTTTGAAAGTTATGCAAAATCAAATAATTGACAATGGGCTTTTGCAAAGAGAGATCCA
GGACCTTGAAGAAAAAGTGTTTGAAGTGATGAGAAGGCGAGATGAAAGGAAAAAGTCAGTTCTATCTTATCTGTACTTTTACTATTCCAACTCTCTTTTATCATCACATATTACCTTCTTTCACATGAAATAATCTTGAATGATAAAACAGATTGCTTCCTTGATGTTGCTTTTCTTTAAGTAATCTATTATTCCATACA
AATAAATACATTATGGTGTATATGGAGGAAAAGCTGCATCATTCTATTTATAATCTGCTCCTCTCTGTATTGTATATGTCAGAAGTATGCATAATTGTACACAACTCTTCCCAGCCAGAAAGGATGTGAGGAACCAAACTTTTGTCATCATAGTAGTGGATAGTAGCCCACTTAGGAATCAGGATTGGGATTAAAACATT
GAACAGTGGAGTCAAGAATCACGTCAAAATTTTCCATCCTTGTTTGAAGTATGAGAATGTTCCTAAATTTTACTGCTGGGAATGTTTTGAAAACTTATTTTCAGAACTCATAGTATTTTGAAACGAATGGCACATTTCCTTCTCTCCATCTTAGACAAAACCCATACAATATCACACAATCCTTTGGTGTAATGTATTTG
CTTTGAAATCAGTACAT