sp|Q9M8L4|GLPK_ARATH ----> Glycerol kinase
Intron 1 GTACATAATA ... TCTGGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.3 | 106 | 8.6 | 27 |
| A2 | 15.83 | 117 | 16.2 | 22 |
| A3 | 20.33 | 98 | 9.9 | 25 |
| A4 | 13.18 | 112 | 9.8 | 17 |
| A5 | 18.18 | 45 | 2.5 | 10 |
| A6 | 14.96 | 108 | 7.1 | 19 |
| A7 | 12.8 | 184 | 10.5 | 27 |
| A8 | 18.99 | 128 | 5.2 | 30 |
| A9 | 11.6 | 160 | 13.2 | 21 |
| A10 | 12.07 | 153 | 10.2 | 21 |
>TRINITY_DN124017_c0_g2_i2 from sample A1 / Example spliced isoformCGTCCTATGATTTTTCATTTATTTTGGTTGGATAAATTTTGTAATCGAGTTGGGGAGGATGCCAAAATATTCATTGGGCGAGAGCCAAAGAGCGGCAGCAGCTCAAGACCTCTCTCGAATCCGTCTACTCTCCCCCACAATTTTTCCTACCAAGGTCATCGAGATGACCTCCTCTCTCTCCAATTCGCTCTACCTCGGCA
TAGATGTCGGCACTGGCAGTGCACGAGCAGGGATCTTTGATGAACATGGAAATCTTTTAGGTTCAGCCAGCAGTCCTTTACAGATATGGAAGGAGGGAGACTGTATAGAGCAATCATCAACAGATATATGGCATGCAGTCTGTGCAGCAACCAGAGCAGCATGCAAATTGGCAAATGTGTCTGGTGAAAACGTTTCCAGC
GTGGGTTTTGCTGCTACGTGCTCTCTTGTTGCTGTGGGTGCGGATGACTCTCCTGTTACTGTTTCTTGGAGTGGTGATGCAAGACGAAATGTAATAGTTTGGATGGATCACAGAGCTGTAGAACAGGCAGAGCGCATCAATGCATGCAATTCACCTGTGTTGCAGTATGCTGGTGGTGCACTTTCACCAGAAATGGAACC
TCCTAAGCTTTTGTGGGTGAAGGAAAATTTACCAGAATCTTGGGCCATGGCATTCAGGTGGATGGACCTGACTGACTGGCTAACATTCAGGGCCACTGGAGATGATACCCGTAGTTTATGCACGACAGTCTGCAAATGGACATACCTAGGTCATGCACACATGCAGCAGATGAATAGCAAGGACTCTGAAGCGATGGATG
CATGTGGATGGGATGATGTTTTCTGGGAGGAAATTGGTCTAGGAGACCTTGTGGAAGGACGCTACACTAAAATAGGAAGAAGCATGGCATTTCCTGGACACCCTCTGGGCACTGGCTTAATAGCAAGAGCTGCAAAGGAACTTGGGCTGATGGAGGGAACTCCTGTTGGGACTTCATTAATTGATGCCCATGCTGGAGGC
ATAGGAGTTATAGAAAGTGTACCATCACCGAATATAAAGTTTAAAGAAGAAGAAGAACTGGAAGCACTTTGCCACAGAATGGTGTTAGTATGTGGTACATCTACATGCCACATGGCTGTATCTCAGAAAAAAGTTTTCATTCCAGGTGTCTGGGGGCCTTTTTGGTCAGCAATGGTACCGGAGTTATGGCTTACTGAAGG
TGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCCGCTGCTCCTATTCTGGCGAACCGCGCAGCATCACAAAATGTCTCACTTTACGAGCTACTAAATAGAACTTTAGAAAAAATGGCACATGATTCACAGGCACCATTTGTTGCTTCTTTGTCAAAGGATTTACATGTGCTTCCAGATTTCC
ATGGTAACAGATCTCCAGTTGCAGATCCGAAGGCAAAAGGGATGGTTTGTGGTCTGACACTTGATACCAGCGACAAATCATTGGCTATTTTGTATCTTGCCACAGTACAAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATTCTCATGGTCACAAGATTGATACACTTCTTGCATGTGGGGGACTCTCA
AAAAATTCCTTGTATGTTCAAGAGCATGCAGACATCATTGGTTGCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCTTAGGTGCAGCTATATTGGGTGCAGTTTCTTCAAAGAAGTATGCCACTCTTCATGATGCAATGAAAGCACTTAATGCACCAGGGCAGGTGACAATATAATCTTGAAATTCTCCAGCAAG
GAAAGAAAATGAAAATAAAATTTGAAATAGAGCAGGAACCAGATTAACCAAGCATAAAGAAGCTCAAAATTGCAAAGGCTATTTGTTTTGGCTGATTGAATCTGACTTTGCAAGTTCCAAATTTGGATTCTACAGTGTGGAGGAAGTGTTTCTTGCAATTCAGTGTTCATCTTCCTATATGAGGATACTATATCTAATTA
TGAAATGTGAAAAGCATAGATCTCTCTTTGGAGGC
>TRINITY_DN124017_c0_g2_i11 from sample A1 / Example unspliced isoform:TGACTGACTGGCTAACATTCAGgtacataataatgaatatttttgacattgaaatttaatgctgggggcttggtgcctggttaaccttttcccttaacgacaaactgtggacagtgggatgcttcatgcagaactactaccactaattgatgagtcatttataatttctcctttttttactaattggatagttaggatac
aattttagataatagtcatcttcgaaattaatttaatgcttacattagtgtcggtgtggacggtagttgcaaaatatctactcttaaatatgatatatgatctagcatgtgtgattaattctgggtcagGGCCACTGGAGATGATACCCGTAGTTTATGCACGACAGTCTGCAAATGGACATACCTAGGTCATGCACACA
TGCAGCAGATGAATAGCAAGGACTCTGAAGCGATGGATGCATGTGGATGGGATGATGTTTTCTGGGAGGAAATTGGTCTAGGAGACCTTGTGGAAGGACGCTACACTAAAATAGGTATGCAACTACATATAATATCTATCTTAGAGAGTGGACATAAAGCATCTTTTTCTCTCTATATCCTTCTTTAAAAATGTTTTTTT
ATGTAACAATTGAATTTTAACAAAAAGAAACTGACTATGGATGCACGAGCAGCTAATATGC
Intron 2 GTTTGTAATC ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.86 | 60.6 | 7.4 | 15 |
| A2 | 9.32 | 68.1 | 3.9 | 7 |
| A3 | 23.29 | 56 | 4.2 | 17 |
| A4 | 20.38 | 54.7 | 3.2 | 14 |
| A5 | 13.57 | 31.9 | 2.5 | 5 |
| A6 | 23.82 | 44.8 | 1.8 | 14 |
| A7 | 16.38 | 76.6 | 5.4 | 15 |
| A8 | 24.42 | 52.6 | 2.1 | 17 |
| A9 | 17.4 | 85.5 | 3.2 | 18 |
| A10 | 13.29 | 111 | 5.7 | 17 |
>TRINITY_DN124017_c0_g2_i10 from sample A1 / Example spliced isoformCGTCCTATGATTTTTCATTTATTTTGGTTGGATAAATTTTGTAATCGAGTTGGGGAGGATGCCAAAATATTCATTGGGCGAGAGCCAAAGAGCGGCAGCAGCTCAAGACCTCTCTCGAATCCGTCTACTCTCCCCCACAATTTTTCCTACCAAGGTCATCGAGATGACCTCCTCTCTCTCCAATTCGCTCTACCTCGGCA
TAGATGTCGGCACTGGCAGTGCACGAGCAGGGATCTTTGATGAACATGGAAATCTTTTAGGTTCAGCCAGCAGTCCTTTACAGATATGGAAGGAGGGAGACTGTATAGAGCAATCATCAACAGATATATGGCATGCAGTCTGTGCAGCAACCAGAGCAGCATGCAAATTGGCAAATGTGTCTGGTGAAAACGTTTCCAGC
GTGGGTTTTGCTGCTACGTGCTCTCTTGTTGCTGTGGGTGCGGATGACTCTCCTGTTACTGTTTCTTGGAGTGGTGATGCAAGACGAAATGTAATAGTTTGGATGGATCACAGAGCTGTAGAACAGGCAGAGCGCATCAATGCATGCAATTCACCTGTGTTGCAGTATGCTGGTGGTGCACTTTCACCAGAAATGGAACC
TCCTAAGGTATGGTGCAATACAGATTGCATTGAGTCTTAGGGTGTAGCTGCTTAACGAATGTTTCTTCCACTCGTACACTTTCTGAACATTGAAGCTACAAAATATCATGGAGGTCAAAGTCTAACATGCATGGGAATTTTGTGATACATTTATTAAGATATTTGATCCCTCCTAATGATCTATGTATTGATAATAGACA
TGTTTATGAATCAGTTATCATAGGTGTATGGTGTTACAGCTTGATTTAAAACTTTAGTGGGAAACTCCTAATCCACTAGTGCTATCAAGGAGCAACTTTGGAGGAATGCACCC
>TRINITY_DN124017_c0_g2_i13 from sample A1 / Example unspliced isoform:CGTCCTATGATTTTTCATTTATTTTGGTTGGATAAATTTTGTAATCGAGTTGGGGAGGATGCCAAAATATTCATTGGGCGAGAGCCAAAGAGCGGCAGCAGCTCAAGACCTCTCTCGAATCCGTCTACTCTCCCCCACAATTTTTCCTACCAAGGTCATCGAGATGACCTCCTCTCTCTCCAATTCGCTCTACCTCGGCA
TAGATGTCGGCACTGGCAGTGCACGAGCAGGGATCTTTGATGAACATGGAAATCTTTTAGGTTCAGCCAGCAGTCCTTTACAGATATGGAAGGAGGGAGACTGTATAGAGATATATGGCATGCAGTCTGTGCAGCAACCAGAGCAGCATGCAAATTGGCAAATGTGTCTGGTGAAAACGTTTCCAGCGTGGGTTTTGCTG
CTACGTGCTCTCTTGgtttgtaatctttcatttctattcttgttacaagaaaataggataaggaaaaagaaacagaggaagaaaatatcctttttgttgtccttttgctttaccctgcagctgcaaatgatttaaacttatggaattatataataataatgtttattctgcatgatttaccttagcaggcatttcaagga
ccattttattattttctattatttgcagTTGCTGTGGGTGCGGATGACTCTCCTGTTACTGTTTCTTGGAGTGGTGATGCAAGACGAAATGTAATAGTTTGGATGGATCACAGAGCTGTAGAACAGGCAGAGCGCATCAATGCATGCAATTCACCTGTGTTGCAGTATGCTGGTGGTGCACTTTCACCAGAAATGGAACC
TCCTAAGCTTTTGTGGGTGAAGGAAAATTTACCAGAATCTTGGGCCATGGCATTCAGGTGGATGGACCTGACTGACTGGCTAACATTCAGGGCCACTGGAGATGATACCCGTAGTTTATGCACGACAGTCTGCAAATGGACATACCTAGGTCATGCACACATGCAGCAGATGAATAGCAAGGACTCTGAAGCGATGGATG
CATGTGGATGGGATGATGTTTTCTGGGAGGAAATTGGTCTAGGAGACCTTGTGGAAGGACGCTACACTAAAATAGGAAGAAGCATGGCATTTCCTGGACACCCTCTGGGCACTGGCTTAATAGCAAGAGCTGCAAAGGAACTTGGGCTGATGGAGGGAACTCCTGTTGGGACTTCATTAATTGATGCCCATGCTGGAGGC
ATAGGAGTTATAGAAAGTGTACCATCACCGAATATAAAGTTTAAAGAAGAAGAAGAACTGGAAGCACTTTGCCACAGAATGGTGTTAGTATGTGGTACATCTACATGCCACATGGCTGTATCTCAGAAAAAAGTTTTCATTCCAGGTGTCTGGGGGCCTTTTTGGTCAGCAATGGTACCGGAGTTATGGCTTACTGAAGG
TGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCCGCTGCTCCTATTCTGGCGAACCGCGCAGCATCACAAAATGTCTCACTTTACGAGCTACTAAATAGAACTTTAGAAAAAATGGCACATGATTCACAGGCACCATTTGTTGCTTCTTTGTCAAAGGATTTACATGTGCTTCCAGATTTCC
ATGGTAACAGATCTCCAGTTGCAGATCCGAAGGCAAAAGGGATGGTTTGTGGTCTGACACTTGATACCAGCGACAAATCATTGGCTATTTTGTATCTTGCCACAGTACAAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATTCTCATGGTCACAAGATTGATACACTTCTTGCATGTGGGGGACTCTCA
AAAAATTCCTTGTATGTTCAAGAGCATGCAGACATCATTGGTTGCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCTTAGGTGCAGCTATATTGGGTGCAGTTTCTTCAAAGAAGTATGCCACTCTTCATGATGCAATGAAAGCACTTAATGCACCAGGGCAGGTGTTCCAGCCATCCGAAGACCCCAAGGTGAA
GAAATACCATGATGCAAAATACCATATCTTTCGTGCACTATATGAACAACAACTCTCTTATCGAGCAATTATAAATGATGCTCTTAATTAAATTAAACATTATGTTGTATCATGGCTAGAACTCCCAAGTGTAATTTTCATTTGATAGCATTATCCCATATTTGTTTTTATATGGGAATATGATGGCGTTGTTTTCACTG
TAACTAGGCATGAATGTTCCAAAGATTAACTGTAACATTAGTCATTTTGTTGGCTTTATGGTGGACAGACTTCCATGGACACTTGTATGCATAGCAAAAACGTTGTATTCAGAAGTGAAATATGCGACAAACATGGAAAGAAGAGAGCTGTCACTGTCTGTGTATTATAATTAAAGCTTTTGTGATGTATTTTTGTCTAC
TCTGTCCCTCAATCAACCGAGTATTGCATCTATTTAATTTTCAATCATAAAATCATCTTGTTTCACCATA
Intron 3 GTATGCCACT ... ACCAGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.46 | 29 | 36 | 28 |
| A2 | 48.91 | 35 | 38 | 29 |
| A3 | 53.66 | 38 | 57 | 31 |
| A4 | 75.61 | 10 | 31 | 31 |
| A5 | 64.91 | 10 | 23 | 14 |
| A6 | 61.09 | 113.4 | 196.1 | 160 |
| A7 | 59.75 | 128 | 207 | 173 |
| A8 | 63.53 | 153 | 281 | 252 |
| A9 | 60.36 | 110 | 171 | 164 |
| A10 | 59.66 | 76.8 | 128 | 99 |
>TRINITY_DN113339_c0_g3_i9 from sample A3 / Example spliced isoformGGAAGGACGCTACACTAAAATAGATCTCCAGTTGCAGATCCGAAGGCAAAAGGGATGGTTTGTGGTCTGACACTTGATACCAGCGACAAATCATTGGCTATTTTGTATCTTGCCACAGTACAAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATTCTCATGGTCACAAGATTGATACACTTCTTGCATG
TGGGGGACTCTCAAAAAATTCCTTGTATGTTCAAGAGCATGCAGACATCATTGGTTGCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCTTAGGTGCAGCTATATTGGGTGCAGTTTCTTCAAAGAAGTGTTCCAGCCATCCGAAGACCCCAAGGTGAAGAAATACCATGATGCAAAATACCATATCTTTCGTGC
ACTATATGAACAACAACTCTCTTATCGAGCAATTATAAATGATGCTCTTAATTAAATTAAACATTATGTTGTATCATGGCTAGAACTCCCAAGTGTAATTTTCATTTGATAGCATTATCCCATATTTGTTTTTATATGGGAATATGATGGCGTTGTTTTCACTGTAACTAGGCATGAATGTTCCAAAGATTAACTGTAAC
ATTAGTCATTTTGTTGGCTTTATGGTGGACAGACTTCCATGGACACTTGTATGCATAGCAAAAACGTTGTATTCAGAAGTGAAATATGCGACAAACATGGAAAGAAGAGAGCTGTCACTGTCTGTGTATTATAATTAAAGCTTTTGTGATGTATTTTTGTCTACTCTGTCCCTCT
>TRINITY_DN113339_c0_g3_i10 from sample A3 / Example unspliced isoform:GCAAGAACATCTATGAATGTCAAATGTCGTAGATGTGCAAGGGCGGACGTCCTATGATTTTTCATTTATTTTGGTTGGATAAATTTTGTAATCGAGTTGGGGAGGATGCCAAAATATTCATTGGGCGAGAGCCAAAGAGCGGCAGCAGCTCAAGACCTCTCTCGAATCCGTCTACTCTCCCCCACAATTTTTCCTACCAA
GGTCATCGAGATGACCTCCTCTCTCTCCAATTCGCTCTACCTCGGCATAGATGTCGGCACTGGCAGTGCACGAGCAGGGATCTTTGATGAACATGGAAATCTTTTAGGTTCAGCCAGCAGTCCTTTACAGATATGGAAGGAGGGAGACTGTATAGAGCAATCATCAACAGATATATGGCATGCAGTCTGTGCAGCAACCA
GAGCAGCATGCAAATTGGCAAATGTGTCTGGTGAAAACGTTTCCAGCGTGGGTTTTGCTGCTACGTGCTCTCTTGTTGCTGTGGGTGCGGATGACTCTCCTGTTACTGTTTCTTGGAGTGGTGATGCAAGACGAAATGTAATAGTTTGGATGGATCACAGAGCTGTAGAACAGGCAGAGCGCATCAATGCATGCAATTCA
CCTGTGTTGCAGTATGCTGGTGGTGCACTTTCACCAGAAATGGAACCTCCTAAGCTTTTGTGGGTGAAGGAAAATTTACCAGAATCTTGGGCCATGGCATTCAGGTGGATGGACCTGACTGACTGGCTAACATTCAGGGCCACTGGAGATGATACCCGTAGTTTATGCACGACAGTCTGCAAATGGACATACCTAGGTCA
TGCACACATGCAGCAGATGAATAGCAAGGACTCTGAAGCGATGGATGCATGTGGATGGGATGATGTTTTCTGGGAGGAAATTGGTCTAGGAGACCTTGTGGAAGGACGCTACACTAAAATAGGAAGAAGCATGGCATTTCCTGGACACCCTCTGGGCACTGGCTTAATAGCAAGAGCTGCAAAGGAACTTGGGCTGATGG
AGGGAACTCCTGTTGGGACTTCATTAATTGATGCCCATGCTGGAGGCATAGGAGTTATAGAAAGTGTACCATCACCGAATATAAAGTTTAAAGAAGAAGAAGAACTGGAAGCACTTTGCCACAGAATGGTGTTAGTATGTGGTACATCTACATGCCACATGGCTGTATCTCAGAAAAAAGTTTTCATTCCAGGTGTCTGG
GGGCCTTTTTGGTCAGCAATGGTACCGGAGTTATGGCTTACTGAAGGTGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCCGCTGCTCCTATTCTGGCGAACCGCGCAGCATCACAAAATGTCTCACTTTACGAGCTACTAAATAGAACTTTAGAAAAAATGGCACATGATTCACAGGCACC
ATTTGTTGCTTCTTTGTCAAAGGATTTACATGTGCTTCCAGATTTCCATGGTAACAGATCTCCAGTTGCAGATCCGAAGGCAAAAGGGATGGTTTGTGGTCTGACACTTGATACCAGCGACAAATCATTGGCTATTTTGTATCTTGCCACAGTACAAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATT
CTCATGGTCACAAGATTGATACACTTCTTGCATGTGGGGGACTCTCAAAAAATTCCTTGTATGTTCAAGAGCATGCAGACATCATTGGTTGCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCTTAGGTGCAGCTATATTGGGTGCAGTTTCTTCAAAGAAgtatgccactcttcatgatgcaatgaaagcactt
aatgcaccagggcagGTGTTCCAGCCATCCGAAGACCCCAAGGTGAAGAAATACCATGATGCAAAATACCATATCTTTCGTGCACTATATGAACAACAACTCTCTTATCGAGCAATTATAAATGATGCTCTTAATTAAATTAAACATTATGTTGTATCATGGCTAGAACTCCCAAGTGTAATTTTCATTTGATAGCATTA
TCCCATATTTGTTTTTATATGGGAATATGATGGCGTTGTTTTCACTGTAACTAGGCATGAATGTTCCAAAGATTAACTGTAACATTAGTCATTTTGTTGGCTTTATGGTGGACAGACTTCCATGGACACTTGTATGCATAGCAAAAACGTTGTATTCAGAAGTGAAATATGCGACAAACATGGAAAGAAGAGAGCTGTCA
CTGTCTGTGTATTATAATTAAAGCTTTTGTGATGTATTTTTGTCTACTCTGTCCCTCT
Intron 4 GCATTTCAAG ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.48 | 61 | 6 | 13 |
| A2 | 6.83 | 68.3 | 4 | 6 |
| A3 | 16.42 | 56 | 9 | 13 |
| A4 | 14.73 | 55 | 6 | 13 |
| A5 | 15.79 | 32 | 7 | 5 |
| A6 | 17.43 | 45 | 5 | 14 |
| A7 | 15.85 | 77 | 14 | 15 |
| A8 | 20.9 | 53 | 9 | 19 |
| A9 | 13.57 | 86 | 9 | 18 |
| A10 | 15.53 | 111.5 | 20 | 21 |
>TRINITY_DN45301_c3_g1_i3 from sample A10 / Example spliced isoformGTGCAAGGGCGGACGTCCTATGATTTTTCATTTATTTTGGTTGGATAAATTTTGTAATCGAGTTGGGGAGGATGCCAAAATATTCATTGGGCGAGAGCCAAAGAGCGGCAGCAGCTCAAGACCTCTCTCGAATCCGTCTACTCTCCCCCACAATTTTTCCTACCAAGGTCATCGAGATGACCTCCTCTCTCTCCAATTCG
CTCTACCTCGGCATAGATGTCGGCACTGGCAGTGCACGAGCAGGGATCTTTGATGAACATGGAAATCTTTTAGGTTCAGCCAGCAGTCCTTTACAGATATGGAAGGAGGGAGACTGTATAGAGCAATCATCAACAGATATATGGCATGCAGTCTGTGCAGCAACCAGAGCAGCATGCAAATTGGCAAATGTGTCTGGTGA
AAACGTTTCCAGCGTGGGTTTTGCTGCTACGTGCTCTCTTGTTGCTGTGGGTGCGGATGACTCTCCTGTTACTGTTTCTTGGAGTGGTGATGCAAGACGAAATGTAATAGTTTGGATGGATCACAGAGCTGTAGAACAGGCAGAGCGCATCAATGCATGCAATTCACCTGTGTTGCAGTATGCTGGTGGTGCACTTTCAC
CAGAAATGGAACCTCCTAAGCTTTTGTGGGTGAAGGAAAATTTACCAGAATCTTGGGCCATGGCATTCAGGTGGATGGACCTGACTGACTGGCTAACATTCAGGGCCACTGGAGATGATACCCGTAGTTTATGCACGACAGTCTGCAAATGGACATACCTAGGTCATGCACACATGCAGCAGATGAATAGCAAGGACTCT
GAAGCGATGGATGCATGTGGATGGGATGATGTTTTCTGGGAGGAAATTGGTCTAGGAGACCTTGTGGAAGGACGCTACACTAAAATAGGAAGAAGCATGGCATTTCCTGGACACCCTCTGGGCACTGGCTTAATAGCAAGAGCTGCAAAGGAACTTGGGCTGATGGAGGGAACTCCTGTTGGGACTTCATTAATTGATGC
CCATGCTGGAGGCATAGGAGTTATAGAAAGTGTACCATCACCGAATATAAAGTTTAAAGAAGAAGAAGAACTGGAAGCACTTTGCCACAGAATGGTGTTAGTATGTGGTACATCTACATGCCACATGGCTGTATCTCAGAAAAAAGTTTTCATTCCAGGTGTCTGGGGGCCTTTTTGGTCAGCAATGGTACCGGAGTTAT
GGCTTACTGAAGGTGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCCGCTGCTCCTATTCTGGCGAACCGCGCAGCATCACAAAATCTCCAGTTGCAGATCCGAAGGCAAAAGGGATGGTTTGTGGTCTGACACTTGATACCAGCGACAAATCATTGGCTATTTTGTATCTTGCCACAGTAC
AAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATTCTCATGGTCACAAGATTGATACACTTCTTGCATGTGGGGGACTCTCAAAAAATTCCTTGTATGTTCAAGAGCATGCAGACATCATTGGTTGCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCTTAGGTGCAGCTATATTGGGTGCAGTT
TCTTCAAAGAAGTATGCCACTCTTCATGATGCAATGAAAGCACTTAATGCACCAGGGCAGGTGTTCCAGCCATCCGAAGACCCCAAGGTGAAGAAATACCATGATGCAAAATACCATATCTTTCGTGCACTATATGAACAACAACTCTCTTATCGAGCAATTATAAATGATGCTCTTAATTAAATTAAACATTATGTTGT
ATCATGGCTAGAACTCCCAAGTGTAATTTTCATTTGATAGCATTATCCCATATTTGTTTTTATATGGGAATATGATGGCGTTGTTTTCACTGTAACTAGGCATGAATGTTCCAAAGATTAACTGTAACATTAGTCATTTTGTTGGCTTTATGGTGGACAGACTTCCATGGACACTTGTATGCATAGCAAAAACGTTGTAT
TCAGAAGTGAAATATGCGACAAACATGGAAAGAAGAGAGCTGTCACTGTCTGTGTATTATAATTAAAGCTTTTGTGATGTATTTTTGTCTACTCTGTCCCTCAATCAACCGAGTATTGCATCTATTTAATTTTCAATCATAAAATCATCTTGTTTCACCAAAAGGTTGCACTTTATAGACTACGATGTGTGTTAAAACGG
ATATTGAAGTCTTAGATCGAGAAATCACACGAGTATGTACATCTCAAGAAGTAGATTTTAGCATGAAGATGGAAATTGCTATTCTAATTAGATTCTGCTTTATATCAAGGAGTTCAACAAATGATGCAAAGTTCTCTATTTTGTTAAGAAAATTGGAATATTATTCATGAGAATGTCTATGATTTAGTGTTTATGTAGGA
CATATACATCTGATACAGACTGTCCTTTATTAGTATTTTGCAATTCAACTAAAC
>TRINITY_DN45301_c3_g1_i4 from sample A10 / Example unspliced isoform:GTGCAAGGGCGGACGTCCTATGATTTTTCATTTATTTTGGTTGGATAAATTTTGTAATCGAGTTGGGGAGGATGCCAAAATATTCATTGGGCGAGAGCCAAAGAGCGGCAGCAGCTCAAGACCTCTCTCGAATCCGTCTACTCTCCCCCACAATTTTTCCTACCAAGGTCATCGAGATGACCTCCTCTCTCTCCAATTCG
CTCTACCTCGGCATAGATGTCGGCACTGGCAGTGCACGAGCAGGGATCTTTGATGAACATGGAAATCTTTTAGGTTCAGCCAGCAGTCCTTTACAGATATGGAAGGAGGGAGACTGTATAGAGATATATGGCATGCAGTCTGTGCAGCAACCAGAGCAGCATGCAAATTGGCAAATGTGTCTGGTGAAAACGTTTCCAGC
GTGGGTTTTGCTGCTACGTGCTCTCTTGgcatttcaaggaccattttattattttctattatttgcagTTGCTGTGGGTGCGGATGACTCTCCTGTTACTGTTTCTTGGAGTGGTGATGCAAGACGAAATGTAATAGTTTGGATGGATCACAGAGCTGTAGAACAGGCAGAGCGCATCAATGCATGCAATTCACCTGTGT
TGCAGTATGCTGGTGGTGCACTTTCACCAGAAATGGAACCTCCTAAGCTTTTGTGGGTGAAGGAAAATTTACCAGAATCTTGGGCCATGGCATTCAGGTGGATGGACCTGACTGACTGGCTAACATTCAGGGCCACTGGAGATGATACCCGTAGTTTATGCACGACAGTCTGCAAATGGACATACCTAGGTCATGCACAC
ATGCAGCAGATGAATAGCAAGGACTCTGAAGCGATGGATGCATGTGGATGGGATGATGTTTTCTGGGAGGAAATTGGTCTAGGAGACCTTGTGGAAGGACGCTACACTAAAATAGGAAGAAGCATGGCATTTCCTGGACACCCTCTGGGCACTGGCTTAATAGCAAGAGCTGCAAAGGAACTTGGGCTGATGGAGGGAAC
TCCTGTTGGGACTTCATTAATTGATGCCCATGCTGGAGGCATAGGAGTTATAGAAAGTGTACCATCACCGAATATAAAGTTTAAAGAAGAAGAAGAACTGGAAGCACTTTGCCACAGAATGGTGTTAGTATGTGGTACATCTACATGCCACATGGCTGTATCTCAGAAAAAAGTTTTCATTCCAGGTGTCTGGGGGCCTT
TTTGGTCAGCAATGGTACCGGAGTTATGGCTTACTGAAGGTGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCCGCTGCTCCTATTCTGGCGAACCGCGCAGCATCACAAAATGTCTCACTTTACGAGCTACTAAATAGAACTTTAGAAAAAATGGCACATGATTCACAGGCACCATTTGTT
GCTTCTTTGTCAAAGGATTTACATGTGCTTCCAGATTTCCATGGTAACAGATCTCCAGTTGCAGATCCGAAGGCAAAAGGGATGGTTTGTGGTCTGACACTTGATACCAGCGACAAATCATTGGCTATTTTGTATCTTGCCACAGTACAAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATTCTCATGG
TCACAAGATTGATACACTTCTTGCATGTGGGGGACTCTCAAAAAATTCCTTGTATGTTCAAGAGCATGCAGACATCATTGGTTGCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCTTAGGTGCAGCTATATTGGGTGCAGTTTCTTCAAAGAAGTATGCCACTCTTCATGATGCAATGAAAGCACTTAATGCAC
CAGGGCAGGTGTTCCAGCCATCCGAAGACCCCAAGGTGAAGAAATACCATGATGCAAAATACCATATCTTTCGTGCACTATATGAACAACAACTCTCTTATCGAGCAATTATAAATGATGCTCTTAATTAAATTAAACATTATGTTGTATCATGGCTAGAACTCCCAAGTGTAATTTTCATTTGATAGCATTATCCCATA
TTTGTTTTTATATGGGAATATGATGGCGTTGTTTTCACTGTAACTAGGCATGAATGTTCCAAAGATTAACTGTAACATTAGTCATTTTGTTGGCTTTATGGTGGACAGACTTCCATGGACACTTGTATGCATAGCAAAAACGTTGTATTCAGAAGTGAAATATGCGACAAACATGGAAAGAAGAGAGCTGTCACTGTCTG
TGTATTATAATTAAAGCTTTTGTGATGTATTTTTGTCTACTCTGTCCCTCAATCAACCGAGTATTGCATCTATTTAATTTTCAATCATAAAATCATCTTGTTTCACCAAAAGGTTGCACTTTATAGACTACGATGTGTGTTAAAACGGATATTGAAGTCTTAGATCGAGAAATCACACGAGTATGTACATCTCAAGAAGT
AGATTTTAGCATGAAGATGGAAATTGCTATTCTAATTAGATTCTGCTTTATATCAAGGAGTTCAACAAATGATGCAAAGTTCTCTATTTTGTTAAGAAAATTGGAATATTATTCATGAGAATGTCTATGATTTAGTGTTTATGTAGGACATATACATCTGATACAGACTGTCCTTTATTAGTATTTTGCAATTCAACTAA
AC
Intron 5 GCAAGCATTT ... TTCTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.5 | 106 | 0 | 5 |
| A2 | 1.22 | 81 | 0 | 1 |
| A3 | 3.65 | 79.3 | 0 | 3 |
| A4 | 0 | 93 | 0 | 0 |
| A5 | 6.9 | 27 | 0 | 2 |
| A6 | 0 | 118 | 0 | 0 |
| A7 | 1.32 | 224 | 0 | 3 |
| A8 | 2.99 | 129.8 | 0 | 4 |
| A9 | 1 | 198 | 0 | 2 |
| A10 | 3.01 | 161.2 | 0 | 5 |
>TRINITY_DN124017_c0_g2_i2 from sample A1 / Example spliced isoformCGTCCTATGATTTTTCATTTATTTTGGTTGGATAAATTTTGTAATCGAGTTGGGGAGGATGCCAAAATATTCATTGGGCGAGAGCCAAAGAGCGGCAGCAGCTCAAGACCTCTCTCGAATCCGTCTACTCTCCCCCACAATTTTTCCTACCAAGGTCATCGAGATGACCTCCTCTCTCTCCAATTCGCTCTACCTCGGCA
TAGATGTCGGCACTGGCAGTGCACGAGCAGGGATCTTTGATGAACATGGAAATCTTTTAGGTTCAGCCAGCAGTCCTTTACAGATATGGAAGGAGGGAGACTGTATAGAGCAATCATCAACAGATATATGGCATGCAGTCTGTGCAGCAACCAGAGCAGCATGCAAATTGGCAAATGTGTCTGGTGAAAACGTTTCCAGC
GTGGGTTTTGCTGCTACGTGCTCTCTTGTTGCTGTGGGTGCGGATGACTCTCCTGTTACTGTTTCTTGGAGTGGTGATGCAAGACGAAATGTAATAGTTTGGATGGATCACAGAGCTGTAGAACAGGCAGAGCGCATCAATGCATGCAATTCACCTGTGTTGCAGTATGCTGGTGGTGCACTTTCACCAGAAATGGAACC
TCCTAAGCTTTTGTGGGTGAAGGAAAATTTACCAGAATCTTGGGCCATGGCATTCAGGTGGATGGACCTGACTGACTGGCTAACATTCAGGGCCACTGGAGATGATACCCGTAGTTTATGCACGACAGTCTGCAAATGGACATACCTAGGTCATGCACACATGCAGCAGATGAATAGCAAGGACTCTGAAGCGATGGATG
CATGTGGATGGGATGATGTTTTCTGGGAGGAAATTGGTCTAGGAGACCTTGTGGAAGGACGCTACACTAAAATAGGAAGAAGCATGGCATTTCCTGGACACCCTCTGGGCACTGGCTTAATAGCAAGAGCTGCAAAGGAACTTGGGCTGATGGAGGGAACTCCTGTTGGGACTTCATTAATTGATGCCCATGCTGGAGGC
ATAGGAGTTATAGAAAGTGTACCATCACCGAATATAAAGTTTAAAGAAGAAGAAGAACTGGAAGCACTTTGCCACAGAATGGTGTTAGTATGTGGTACATCTACATGCCACATGGCTGTATCTCAGAAAAAAGTTTTCATTCCAGGTGTCTGGGGGCCTTTTTGGTCAGCAATGGTACCGGAGTTATGGCTTACTGAAGG
TGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCCGCTGCTCCTATTCTGGCGAACCGCGCAGCATCACAAAATGTCTCACTTTACGAGCTACTAAATAGAACTTTAGAAAAAATGGCACATGATTCACAGGCACCATTTGTTGCTTCTTTGTCAAAGGATTTACATGTGCTTCCAGATTTCC
ATGGTAACAGATCTCCAGTTGCAGATCCGAAGGCAAAAGGGATGGTTTGTGGTCTGACACTTGATACCAGCGACAAATCATTGGCTATTTTGTATCTTGCCACAGTACAAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATTCTCATGGTCACAAGATTGATACACTTCTTGCATGTGGGGGACTCTCA
AAAAATTCCTTGTATGTTCAAGAGCATGCAGACATCATTGGTTGCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCTTAGGTGCAGCTATATTGGGTGCAGTTTCTTCAAAGAAGTATGCCACTCTTCATGATGCAATGAAAGCACTTAATGCACCAGGGCAGGTGACAATATAATCTTGAAATTCTCCAGCAAG
GAAAGAAAATGAAAATAAAATTTGAAATAGAGCAGGAACCAGATTAACCAAGCATAAAGAAGCTCAAAATTGCAAAGGCTATTTGTTTTGGCTGATTGAATCTGACTTTGCAAGTTCCAAATTTGGATTCTACAGTGTGGAGGAAGTGTTTCTTGCAATTCAGTGTTCATCTTCCTATATGAGGATACTATATCTAATTA
TGAAATGTGAAAAGCATAGATCTCTCTTTGGAGGC
>TRINITY_DN124017_c0_g2_i5 from sample A1 / Example unspliced isoform:CTTAATAGCAAGAGCTGCAAAGgcaagcatttaatcgttgaagaataacattaatatcaagtggtgctgcattgagattcatttatcaagctttcaaatataacttatcttagtaatcgtgaaggtttttaaccagacagttctacacacagttgtattgttacttggtcgtgaatctttctgaaggaggaaacgttctc
tgcagGAACTTGGGCTGATGGAGGGAACTCCTGTTGGGACTTCATTAATTGATGCCCATGCTGGAGGCATAGGAGTTATAGAAAGTGTACCATCACCGAATATAAAGTTTAAAG