sp|Q9FXH1|PPR52_ARATH ----> Pentatricopeptide repeat-containing protein At1g19720
Intron 1 GTACATCTTC ... GTATGCCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 1 | 2 | 0 |
| A2 | 100 | 0 | 0 | 2 |
| A3 | 100 | 0 | 1 | 0 |
| A4 | 71.43 | 1 | 2 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 52.38 | 5 | 4 | 7 |
| A7 | 72.73 | 3 | 6 | 10 |
| A8 | 69.23 | 2 | 5 | 4 |
| A9 | 83.33 | 2 | 10 | 10 |
| A10 | 50 | 3 | 3 | 3 |
>TRINITY_DN45246_c0_g2_i2 from sample A10 / Example spliced isoformTTAACAAGCAGATGAGTGGATTCGATGAAGACTGGACAGCGGATTTGTTGAATGCGCGACTGCAAACCATCCTCATGCCAAAGGCTGGTGTCAATGGTGTTCAGCCCAGATATTAATTGTGCACAGCTAAATTTCTCCTCGAAGCCACCATAATTCCGCACAGTAATTCCAATCTTGATTAAACAGTGGAAAAACGCAGG
AGGCTCGCTTGGTTTTCGACGAGGAGATGCAGGAACAAAATGTGGTTGCATGGACTACAATTATTAGTGCTTATGCCCAACAGGGGTTTCTCTAGGATGCCTTCATACTTTTTTCTAAATATGCAGCAAGCTAGATTTTGTCCTGATCAATTCACATTTGCCACAGTTATTCAGGTTATGCTTGAAACGGGTTTCTTGAT
GAGGCCTTGGAGTTCTTTCACAGAATTCTTGAACGAAGCATGATATATTGGACTTCATTTATTGCAGTTTATGCCATGCACGAGCATATCGAGGAAGCGTTGAAACTGTTTTGTGAGATGCAGATATCGAGAATCTAGGGGAATCGACTAACATTTGCTAGTGTTCTTCCAACATTTTCCGATTTGGGGACTTTGGACCA
TGGCAAGGAGATCCATGAAGAAATACTTAGGAGTGGCTACATCAAGTGTATTTGCATTTTCTTTCCATATATGAAGTTTATTTGATGTTGCAGAGGTTTTCTTTTGAAGAAAGGGGCCATTGTTGAAGTTAATCACCCCAAGAGGAGGGCGCATTGCATCTTGGACCACTTATCTCTATATGTTGGGAGCACTTGGGTTT
GGTTTGGTCTTTAGAGGACGCACAATTGAGGGAGATACACTTAATCTACACTGCGCGGAGTTCTGCATAAGAAAAGAGGGTGCACCCGGTATTCTGGTACAAGTTCGTGGGAACTGGGTGACCATTAGAGAGAGGGTCAAACTATTGCACAAATATTTGGCATCTCAATTCAATTCTGGGAAGTCCTATTTACTTCCAAA
TCAGCACCAGCATTCAAAATATCTACATTCAGCCTTATGAAAGGGCAAGTCCTATAGCCATTTATCCATCTTGAAGTCGAGTTATAGTTTCTTCTGTTGGGGGTCTTCATTGCCATCAACATACGGTGGTGATTTCTGTAGCATCATACCACTGGAAAAAGTGCGTTTTGAAGTTGTTCACACTTATCTTATATCTCATA
CATCAGCTACAGTCAATCTCTGCTAAATCATGGCTATATTGCTACTGATTGGACACACAGAGCAAGGTATATTACTACTACTAACACACCAACATCATCACAGTTCACAACGCGAGCATTATGGTATCTTTGTGGTGAGTTTATGGCTGCCACGACTTCATCTTTTTGATGGTCACGTCCCATACTTCTGTTGTTCATCC
AAATACAAGGGAATTCCTCCATCATTTCCAGGCATGTAAATTCTCCTTAATTAATAAATTTGCAGTTATGAGATTTAAAA
>TRINITY_DN45246_c0_g2_i1 from sample A10 / Example unspliced isoform:TTAACAAGCAGATGAGTGGATTCGATGAAGACTGGACAGCGGATTTGTTGAATGCGCGACTGCAAACCATCCTCATGCCAAAGGCTGGTGTCAATGGTGTTCAGCCCAGATATTAATTGTGCACAGCTAAATTTCTCCTCGAAGCCACCATAATTCCGCACAGTAATTCCAATCTTGATTAAACgtacatcttcatactg
tgaatcttgctcctccctcccgctccttccgatttaaagagagtgcaattgttatattgaatttaaattttaattctacaacattaatttttttgtttccctccattggaaatttgggggatttcattttcattttcattatgtatgcctagAGTGGAAAAACGCAGGAGGCTCGCTTGGTTTTCGACGAGGAGATGCAG
GAACAAAATGTGGTTGCATGGACTACAATTATTAGTGCTTATGCCCAACAGGGGTTTCTCTAGGATGCCTTCATACTTTTTTCTAAATATGCAGCAAGCTAGATTTTGTCCTGATCAATTCACATTTGCCACAGTTATTCAGGTTATGCTTGAAACGGGTTTCTTGATGAGGCCTTGGAGTTCTTTCACAGAATTCTTGA
ACGAAGCATGATATATTGGACTTCATTTATTGCAGTTTATGCCATGCACGAGCATATCGAGGAAGCGTTGAAACTGTTTTGTGAGATGCAGATATCGAGAATCTAGGGGAATCGACTAACATTTGCTAGTGTTCTTCCAACATTTTCCGATTTGGGGACTTTGGACCATGGCAAGGAGATCCATGAAGAAATACTTAGGA
GTGGCTACATCAAGTGTATTTGCATTTTCTTTCCATATATGAAGTTTATTTGATGTTGCAGAGGTTTTCTTTTGAAGAAAGGGGCCATTGTTGAAGTTAATCACCCCAAGAGGAGGGCGCATTGCATCTTGGACCACTTATCTCTATATGTTGGGAGCACTTGGGTTTGGTTTGGTCTTTAGAGGACGCACAATTGAGGG
AGATACACTTAATCTACACTGCGCGGAGTTCTGCATAAGAAAAGAGGGTGCACCCGGTATTCTGGTACAAGTTCGTGGGAACTGGGTGACCATTAGAGAGAGGGTCAAACTATTGCACAAATATTTGGCATCTCAATTCAATTCTGGGAAGTCCTATTTACTTCCAAATCAGCACCAGCATTCAAAATATCTACATTCAG
CCTTATGAAAGGGCAAGTCCTATAGCCATTTATCCATCTTGAAGTCGAGTTATAGTTTCTTCTGTTGGGGGTCTTCATTGCCATCAACATACGGTGGTGATTTCTGTAGCATCATACCACTGGAAAAAGTGCGTTTTGAAGTTGTTCACACTTATCTTATATCTCATACATCAGCTACAGTCAATCTCTGCTAAATCATG
GCTATATTGCTACTGATTGGACACACAGAGCAAGGTATATTACTACTACTAACACACCAACATCATCACAGTTCACAACGCGAGCATTATGGTATCTTTGTGGTGAGTTTATGGCTGCCACGACTTCATCTTTTTGATGGTCACGTCCCATACTTCTGTTGTTCATCCAAATACAAGGGAATTCCTCCATCATTTCCAGG
CATGTAAATTCTCCTTAATTAATAAATTTGCAGTTATGAGATTTAAAA
Intron 2 GTACATCTTC ... AAAAACGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 1 | 2 | 2 |
| A2 | 100 | 0 | 0 | 2 |
| A3 | 100 | 0 | 1 | 0 |
| A4 | 63.64 | 2 | 2 | 5 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 57.89 | 4 | 4 | 7 |
| A7 | 61.54 | 5 | 6 | 10 |
| A8 | 52 | 6 | 5 | 8 |
| A9 | 77.78 | 3 | 10 | 11 |
| A10 | 60 | 2 | 3 | 3 |
>TRINITY_DN48219_c1_g5_i1 from sample A7 / Example spliced isoformCGTCATTAGGCAAAAAGTCTCCTCTCCCCGGGACAGCCATCAATGCTCCACACAACACCAAGAAACGAACCTAGAAACAGCAATATAAGCCAACTTCCCCCGATACCAGAAGCCTTCTAACAGAAGACAGAATCCCACACACCTACTCCCAGTGAATTGGACCAACCAGTCGAATCAAGAAATGCAAATCACAAAAATAA
AAAATAGTAATCGCTGGCACAAGCAATGCTATTCAGGATCCAGTCAGAGTAATCCGAATGGAATCGACCAAGAAAATCATCCACCGATCCCTAACCTTAATTTCTCAGCAGAATTCACATCCAAACCGGACTTCCTCGACAGTAATCATCTGATCCTCTGTATACAGCTCACGGCCTTCAATCTTGATGATCCATGGCTG
AATCAAGAAGCCATTTACCGCACTACAATCGCAGATCTCCAGCTCGAATCCACCCGAATCTCAAGGTAATCAGATCCTTTATATTACGAACAACAAAGCATGCGTTCACTCCACCGGCCAATTCCAAAATCAAATTAACAAGCAGATGAGTGGATTCGATGAAGACTGGACAGCGGATTTGTTGAATGCGCGACTGCAAA
CCATCCTCATGCCAAAGGCTGGTGTCAATGGTGTTCAGCCCAGATATTAATTGTGCACAGCTAAATTTCTCCTCGAAGCCACCATAATTCCGCACAGTAATTCCAATCTTGATTAAACGAGGCTCGCTTGGTTTTCGACGAGGAGATGCAGGAACAAAATGTGGTTGCATGGACTACAATTATTAGTGCTTATGCCCAAC
AGGGGTTTCTCTAGGATGCCTTCATACTTTTTTCTAAATATGCAGCAAGCTAGATTTTGTCCTGATCAATTCACATTTGCCACAGTTATTCAGGTTATGCTTGAAACGGGTTTCTTGATGAGGCCTTGGAGTTCTTTCACAGAATTCTTGAACGAAGCATGATATATTGGACTTCATTTATTGCAGTTTATGCCATGCAC
GAGCATATCGAGGAAGCGTTGAAACTGTTTTGTGAGATGCAGATATCGAGAATCTAGGGGAATCGACTAACATTTGCTAGTGTTCTTCCAACATTTTCCGATTTGGGGACTTTGGACCATGGCAAGGAGATCCATGAAGAAATACTTAGGAGTGGCTACATCAAGTGTATTTGCATTTTCTTTCCATATATGAAGTTTAT
TTGATGTTGCAGAGGTTTTCTTTTGAAGAAAGGGGCCATTGTTGAAGTTAATCACCCCAAGAGGAGGGCGCATTGCATCTTGGACCACTTATCTCTATATGTTGGGAGCACTTGGGTTTGGTTTGGTCTTTAGAGGACGCACAATTGAGGGAGATACACTTAATCTACACTGCGCGGAGTTCTGCATAAGAAAAGAGGGT
GCACCCGGTATTCTGGTACAAGTTCGTGGGAACTGGGTGACCATTAGAGAGAGGGTCAAACTATTGCACAAATATTTGGCATCTCAATTCAATTCTGGGAAGTCCTATTTACTTCCAAATCAGCACCAGCATTCAAAATATCTACATTCAGCCTTATGAAAGGGCAAGTCCTATAGCCATTTATCCATCTTGAAGTCGAG
TTATAGTTTCTTCTGTTGGGGGTCTTCATTGCCATCAACATACGGTGGTGATTTCTGTAGCATCATACCACTGGAAAAAGTGCGTTTTGAAGTTGTTCACACTTATCTTATATCTCATACATCAGCTACAGTCAATCTCTGCTAAATCATGGCTATATTGCTACTGATTGGACACACAGAGCAAGGTATATTACTACTAC
TAACACACCAACATCATCACAGTTCACAACGCGAGCATTATGGTATCTTTGTGGTGAGTTTATGGCTGCCACGACTTCATCTTGTTGATGGTCACTTCCCATAGTTCTGTTGTTCATCCAAATACAAGGGAATTCCTCCATCATTTCCAGGCACTGAAAGCAGTCTGACAGATGAGCAACAGAAACAGCCACTACAATAG
CAGCAGGTTCTGCCAACATGCATATCACCTGCACATGCAGAACTTATGACACGGAAAACCCAACTTGAGCTAGGATATTCTATGAGTTATTTTTCCTAACCAGTTATTAATGTACTGTATTTTTTTCCTCTGAGCCAAATTGACATGTTGTTAATGGTACAAGCCATGTGAAATTTTCCTAAATGGATTGGTTCTAAGGA
ATTGTAGTAAAATAGGATGTCGGTTATGGAGAACCCATAATCTATTATGGATAGAACCTATTTAACTTGGAGTTCAGGTCATCAAATGTCTTTGGATGGGCATAAACTGAGATGTTCATCTAGTAAAATGCTATTGCCAGTTTTGTTAAATATTTTGGATCTCAAATTTCTGACAATGCTATTACTATCTCATTTTGAAG
GGAGGTGATACTTTGTGGCAAGCTCAAACTGCATTTTTGTATCCAGATCCCTTTTATGGAAACTATGTTGGATCTTATGGTGCACAAGCCATGGTATTTTATATTTGGCTGAATCACCAATGATTTTTGTAATAGTTTGGTGCATTGGGTTAGAGTCAATGATTGAGATATTCCATCTGCTTGTGATTTCCT
>TRINITY_DN48219_c1_g5_i7 from sample A7 / Example unspliced isoform:CGTCATTAGGCAAAAAGTCTCCTCTCCCCGGGACAGCCATCAATGCTCCACACAACACCAAGAAACGAACCTAGAAACAGCAATATAAGCCAACTTCCCCCGATACCAGAAGCCTTCTAACAGAAGACAGAATCCCACACACCTACTCCCAGTGAATTGGACCAACCAGTCGAATCAAGAAATGCAAATCACAAAAATAA
AAAATAGTAATCGCTGGCACAAGCAATGCTATTCAGGATCCAGTCAGAGTAATCCGAATGGAATCGACCAAGAAAATCATCCACCGATCCCTAACCTTAATTTCTCAGCAGAATTCACATCCAAACCGGACTTCCTCGACAGTAATCATCTGATCCTCTGTATACAGCTCACGGCCTTCAATCTTGATGATCCATGGCTG
AATCAAGAAGCCATTTACCGCACTACAATCGCAGATCTCCAGCTCGAATCCACCCGAATCTCAAGGTAATCAGATCCTTTATATTACGAACAACAAAGCATGCGTTCACTCCACCGGCCAATTCCAAAATCAAATTAACAAGCAGATGAGTGGATTCGATGAAGACTGGACAGCGGATTTGTTGAATGCGCGACTGCAAA
CCATCCTCATGCCAAAGGCTGGTGTCAATGGTGTTCAGCCCAGATATTAATTGTGCACAGCTAAATTTCTCCTCGAAGCCACCATAATTCCGCACAGTAATTCCAATCTTGATTAAACgtacatcttcatactgtgaatcttgctcctccctcccgctccttccgatttaaagagagtgcaattgttatattgaatttaa
attttaattctacaacattaatttttttgtttccctccattggaaatttgggggatttcatttcattttcattatgtatgcctagagtggaaaaacgcagGAGGCTCGCTTGGTTTTCGACGAGGAGATGCAGGAACAAAATGTGGTTGCATGGACTACAATTATTAGTGCTTATGCCCAACAGGGGTTTCTCTAGGATG
CCTTCATACTTTTTTCTAAATATGCAGCAAGCTAGATTTTGTCCTGATCAATTCACATTTGCCACAGTTATTCAGGTATGTTCCCATTTGCCAGACATCGTTTTGGGGAAGGCGGTTCACAATAACATAGTTAGAAGTGGGTTTCAGATCTATGTATTTGTGGGAAACACTCTTGTAGATATGTATGTAAAGTGTGGACG
AATATATGATGCACAAAAAGTGTTTGAAAAAATGCCTGAGACAAATGTGGCCACTTCGATTGCCATGATTGCAGGTTATGCTTGAAACGGGTTTCTTGATGAGGCCTTGGAGTTCTTTCACAGAATTCTTGAACGAAGCATGATATATTGGACTTCATTTATTGCAGTTTATGCCATGCACGAGCATATCGAGGAAGCGT
TGAAACTGTTTTGTGAGATGCAGATATCGAGAATCTAGGGGAATCGACTAACATTTGCTAGTGTTCTTCCAACATTTTCCGATTTGGGGACTTTGGACCATGGCAAGGAGATCCATGAAGAAATACTTAGGAGTGGCTACATCAAGTGTATTTGCATTTTCTTTCCATATATGAAGTTTATTTGATGTTGCAGAGGTTTT
CTTTTGAAGAAAGGGGCCATTGTTGAAGTTAATCACCCCAAGAGGAGGGCGCATTGCATCTTGGACCACTTATCTCTATATGTTGGGAGCACTTGGGTTTGGTTTGGTCTTTAGAGGACGCACAATTGAGGGAGATACACTTAATCTACACTGCGCGGAGTTCTGCATAAGAAAAGAGGGTGCACCCGGTATTCTGGTAC
AAGTTCGTGGGAACTGGGTGACCATTAGAGAGAGGGTCAAACTATTGCACAAATATTTGGCATCTCAATTCAATTCTGGGAAGTCCTATTTACTTCCAAATCAGCACCAGCATTCAAAATATCTACATTCAGCCTTATGAAAGGGCAAGTCCTATAGCCATTTATCCATCTTGAAGTCGAGTTATAGTTTCTTCTGTTGG
GGGTCTTCATTGCCATCAACATACGGTGGTGATTTCTGTAGCATCATACCACTGGAAAAAGTGCGTTTTGAAGTTGTTCACACTTATCTTATATCTCATACATCAGCTACAGTCAATCTCTGCTAAATCATGGCTATATTGCTACTGATTGGACACACAGAGCAAGGTATATTACTACTACTAACACACCAACATCATCA
CAGTTCACAACGCGAGCATTATGGTATCTTTGTGGTGAGTTTATGGCTGCCACGACTTCATCTTTTTGATGGTCACGTCCCATACTTCTGTTGTTCATCCAAATACAAGGGAATTCCTCCATCATTTCCAGGCATGTAAATTCTCCTTAATTAATAAATTTGCA
Intron 3 GTATGTTCCC ... ATGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.45 | 3 | 2 | 3 |
| A2 | 50 | 2 | 0 | 4 |
| A3 | 33.33 | 3 | 1 | 2 |
| A4 | 25 | 3 | 0 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 33.33 | 2 | 1 | 1 |
| A7 | 45.45 | 6 | 6 | 4 |
| A8 | 36.36 | 14 | 7 | 9 |
| A9 | 24.14 | 11 | 5 | 2 |
| A10 | 30.43 | 8 | 4 | 3 |
>TRINITY_DN48219_c1_g5_i1 from sample A7 / Example spliced isoformCGTCATTAGGCAAAAAGTCTCCTCTCCCCGGGACAGCCATCAATGCTCCACACAACACCAAGAAACGAACCTAGAAACAGCAATATAAGCCAACTTCCCCCGATACCAGAAGCCTTCTAACAGAAGACAGAATCCCACACACCTACTCCCAGTGAATTGGACCAACCAGTCGAATCAAGAAATGCAAATCACAAAAATAA
AAAATAGTAATCGCTGGCACAAGCAATGCTATTCAGGATCCAGTCAGAGTAATCCGAATGGAATCGACCAAGAAAATCATCCACCGATCCCTAACCTTAATTTCTCAGCAGAATTCACATCCAAACCGGACTTCCTCGACAGTAATCATCTGATCCTCTGTATACAGCTCACGGCCTTCAATCTTGATGATCCATGGCTG
AATCAAGAAGCCATTTACCGCACTACAATCGCAGATCTCCAGCTCGAATCCACCCGAATCTCAAGGTAATCAGATCCTTTATATTACGAACAACAAAGCATGCGTTCACTCCACCGGCCAATTCCAAAATCAAATTAACAAGCAGATGAGTGGATTCGATGAAGACTGGACAGCGGATTTGTTGAATGCGCGACTGCAAA
CCATCCTCATGCCAAAGGCTGGTGTCAATGGTGTTCAGCCCAGATATTAATTGTGCACAGCTAAATTTCTCCTCGAAGCCACCATAATTCCGCACAGTAATTCCAATCTTGATTAAACGAGGCTCGCTTGGTTTTCGACGAGGAGATGCAGGAACAAAATGTGGTTGCATGGACTACAATTATTAGTGCTTATGCCCAAC
AGGGGTTTCTCTAGGATGCCTTCATACTTTTTTCTAAATATGCAGCAAGCTAGATTTTGTCCTGATCAATTCACATTTGCCACAGTTATTCAGGTTATGCTTGAAACGGGTTTCTTGATGAGGCCTTGGAGTTCTTTCACAGAATTCTTGAACGAAGCATGATATATTGGACTTCATTTATTGCAGTTTATGCCATGCAC
GAGCATATCGAGGAAGCGTTGAAACTGTTTTGTGAGATGCAGATATCGAGAATCTAGGGGAATCGACTAACATTTGCTAGTGTTCTTCCAACATTTTCCGATTTGGGGACTTTGGACCATGGCAAGGAGATCCATGAAGAAATACTTAGGAGTGGCTACATCAAGTGTATTTGCATTTTCTTTCCATATATGAAGTTTAT
TTGATGTTGCAGAGGTTTTCTTTTGAAGAAAGGGGCCATTGTTGAAGTTAATCACCCCAAGAGGAGGGCGCATTGCATCTTGGACCACTTATCTCTATATGTTGGGAGCACTTGGGTTTGGTTTGGTCTTTAGAGGACGCACAATTGAGGGAGATACACTTAATCTACACTGCGCGGAGTTCTGCATAAGAAAAGAGGGT
GCACCCGGTATTCTGGTACAAGTTCGTGGGAACTGGGTGACCATTAGAGAGAGGGTCAAACTATTGCACAAATATTTGGCATCTCAATTCAATTCTGGGAAGTCCTATTTACTTCCAAATCAGCACCAGCATTCAAAATATCTACATTCAGCCTTATGAAAGGGCAAGTCCTATAGCCATTTATCCATCTTGAAGTCGAG
TTATAGTTTCTTCTGTTGGGGGTCTTCATTGCCATCAACATACGGTGGTGATTTCTGTAGCATCATACCACTGGAAAAAGTGCGTTTTGAAGTTGTTCACACTTATCTTATATCTCATACATCAGCTACAGTCAATCTCTGCTAAATCATGGCTATATTGCTACTGATTGGACACACAGAGCAAGGTATATTACTACTAC
TAACACACCAACATCATCACAGTTCACAACGCGAGCATTATGGTATCTTTGTGGTGAGTTTATGGCTGCCACGACTTCATCTTGTTGATGGTCACTTCCCATAGTTCTGTTGTTCATCCAAATACAAGGGAATTCCTCCATCATTTCCAGGCACTGAAAGCAGTCTGACAGATGAGCAACAGAAACAGCCACTACAATAG
CAGCAGGTTCTGCCAACATGCATATCACCTGCACATGCAGAACTTATGACACGGAAAACCCAACTTGAGCTAGGATATTCTATGAGTTATTTTTCCTAACCAGTTATTAATGTACTGTATTTTTTTCCTCTGAGCCAAATTGACATGTTGTTAATGGTACAAGCCATGTGAAATTTTCCTAAATGGATTGGTTCTAAGGA
ATTGTAGTAAAATAGGATGTCGGTTATGGAGAACCCATAATCTATTATGGATAGAACCTATTTAACTTGGAGTTCAGGTCATCAAATGTCTTTGGATGGGCATAAACTGAGATGTTCATCTAGTAAAATGCTATTGCCAGTTTTGTTAAATATTTTGGATCTCAAATTTCTGACAATGCTATTACTATCTCATTTTGAAG
GGAGGTGATACTTTGTGGCAAGCTCAAACTGCATTTTTGTATCCAGATCCCTTTTATGGAAACTATGTTGGATCTTATGGTGCACAAGCCATGGTATTTTATATTTGGCTGAATCACCAATGATTTTTGTAATAGTTTGGTGCATTGGGTTAGAGTCAATGATTGAGATATTCCATCTGCTTGTGATTTCCT
>TRINITY_DN48219_c1_g5_i7 from sample A7 / Example unspliced isoform:CGTCATTAGGCAAAAAGTCTCCTCTCCCCGGGACAGCCATCAATGCTCCACACAACACCAAGAAACGAACCTAGAAACAGCAATATAAGCCAACTTCCCCCGATACCAGAAGCCTTCTAACAGAAGACAGAATCCCACACACCTACTCCCAGTGAATTGGACCAACCAGTCGAATCAAGAAATGCAAATCACAAAAATAA
AAAATAGTAATCGCTGGCACAAGCAATGCTATTCAGGATCCAGTCAGAGTAATCCGAATGGAATCGACCAAGAAAATCATCCACCGATCCCTAACCTTAATTTCTCAGCAGAATTCACATCCAAACCGGACTTCCTCGACAGTAATCATCTGATCCTCTGTATACAGCTCACGGCCTTCAATCTTGATGATCCATGGCTG
AATCAAGAAGCCATTTACCGCACTACAATCGCAGATCTCCAGCTCGAATCCACCCGAATCTCAAGGTAATCAGATCCTTTATATTACGAACAACAAAGCATGCGTTCACTCCACCGGCCAATTCCAAAATCAAATTAACAAGCAGATGAGTGGATTCGATGAAGACTGGACAGCGGATTTGTTGAATGCGCGACTGCAAA
CCATCCTCATGCCAAAGGCTGGTGTCAATGGTGTTCAGCCCAGATATTAATTGTGCACAGCTAAATTTCTCCTCGAAGCCACCATAATTCCGCACAGTAATTCCAATCTTGATTAAACGTACATCTTCATACTGTGAATCTTGCTCCTCCCTCCCGCTCCTTCCGATTTAAAGAGAGTGCAATTGTTATATTGAATTTAA
ATTTTAATTCTACAACATTAATTTTTTTGTTTCCCTCCATTGGAAATTTGGGGGATTTCATTTCATTTTCATTATGTATGCCTAGAGTGGAAAAACGCAGGAGGCTCGCTTGGTTTTCGACGAGGAGATGCAGGAACAAAATGTGGTTGCATGGACTACAATTATTAGTGCTTATGCCCAACAGGGGTTTCTCTAGGATG
CCTTCATACTTTTTTCTAAATATGCAGCAAGCTAGATTTTGTCCTGATCAATTCACATTTGCCACAGTTATTCAGgtatgttcccatttgccagacatcgttttggggaaggcggttcacaataacatagttagaagtgggtttcagatctatgtatttgtgggaaacactcttgtagatatgtatgtaaagtgtggacg
aatatatgatgcacaaaaagtgtttgaaaaaatgcctgagacaaatgtggccacttcgattgccatgattgcagGTTATGCTTGAAACGGGTTTCTTGATGAGGCCTTGGAGTTCTTTCACAGAATTCTTGAACGAAGCATGATATATTGGACTTCATTTATTGCAGTTTATGCCATGCACGAGCATATCGAGGAAGCGT
TGAAACTGTTTTGTGAGATGCAGATATCGAGAATCTAGGGGAATCGACTAACATTTGCTAGTGTTCTTCCAACATTTTCCGATTTGGGGACTTTGGACCATGGCAAGGAGATCCATGAAGAAATACTTAGGAGTGGCTACATCAAGTGTATTTGCATTTTCTTTCCATATATGAAGTTTATTTGATGTTGCAGAGGTTTT
CTTTTGAAGAAAGGGGCCATTGTTGAAGTTAATCACCCCAAGAGGAGGGCGCATTGCATCTTGGACCACTTATCTCTATATGTTGGGAGCACTTGGGTTTGGTTTGGTCTTTAGAGGACGCACAATTGAGGGAGATACACTTAATCTACACTGCGCGGAGTTCTGCATAAGAAAAGAGGGTGCACCCGGTATTCTGGTAC
AAGTTCGTGGGAACTGGGTGACCATTAGAGAGAGGGTCAAACTATTGCACAAATATTTGGCATCTCAATTCAATTCTGGGAAGTCCTATTTACTTCCAAATCAGCACCAGCATTCAAAATATCTACATTCAGCCTTATGAAAGGGCAAGTCCTATAGCCATTTATCCATCTTGAAGTCGAGTTATAGTTTCTTCTGTTGG
GGGTCTTCATTGCCATCAACATACGGTGGTGATTTCTGTAGCATCATACCACTGGAAAAAGTGCGTTTTGAAGTTGTTCACACTTATCTTATATCTCATACATCAGCTACAGTCAATCTCTGCTAAATCATGGCTATATTGCTACTGATTGGACACACAGAGCAAGGTATATTACTACTACTAACACACCAACATCATCA
CAGTTCACAACGCGAGCATTATGGTATCTTTGTGGTGAGTTTATGGCTGCCACGACTTCATCTTTTTGATGGTCACGTCCCATACTTCTGTTGTTCATCCAAATACAAGGGAATTCCTCCATCATTTCCAGGCATGTAAATTCTCCTTAATTAATAAATTTGCA
Intron 4 GTACATCTTC ... GTATGCCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 1 | 2 | 0 |
| A2 | 100 | 0 | 0 | 2 |
| A3 | 100 | 0 | 1 | 0 |
| A4 | 71.43 | 1 | 2 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 52.38 | 5 | 4 | 7 |
| A7 | 72.73 | 3 | 6 | 10 |
| A8 | 69.23 | 2 | 5 | 4 |
| A9 | 83.33 | 2 | 10 | 10 |
| A10 | 50 | 3 | 3 | 3 |
>TRINITY_DN48219_c1_g5_i6 from sample A7 / Example spliced isoformCGTCATTAGGCAAAAAGTCTCCTCTCCCCGGGACAGCCATCAATGCTCCACACAACACCAAGAAACGAACCTAGAAACAGCAATATAAGCCAACTTCCCCCGATACCAGAAGCCTTCTAACAGAAGACAGAATCCCACACACCTACTCCCAGTGAATTGGACCAACCAGTCGAATCAAGAAATGCAAATCACAAAAATAA
AAAATAGTAATCGCTGGCACAAGCAATGCTATTCAGGATCCAGTCAGAGTAATCCGAATGGAATCGACCAAGAAAATCATCCACCGATCCCTAACCTTAATTTCTCAGCAGAATTCACATCCAAACCGGACTTCCTCGACAGTAATCATCTGATCCTCTGTATACAGCTCACGGCCTTCAATCTTGATGATCCATGGCTG
AATCAAGAAGCCATTTACCGCACTACAATCGCAGATCTCCAGCTCGAATCCACCCGAATCTCAAGGTAATCAGATCCTTTATATTACGAACAACAAAGCATGCGTTCACTCCACCGGCCAATTCCAAAATCAAATTAACAAGCAGATGAGTGGATTCGATGAAGACTGGACAGCGGATTTGTTGAATGCGCGACTGCAAA
CCATCCTCATGCCAAAGGCTGGTGTCAATGGTGTTCAGCCCAGATATTAATTGTGCACAGCTAAATTTCTCCTCGAAGCCACCATAATTCCGCACAGTAATTCCAATCTTGATTAAACAGTGGAAAAACGCAGGAGGCTCGCTTGGTTTTCGACGAGGAGATGCAGGAACAAAATGTGGTTGCATGGACTACAATTATTA
GTGCTTATGCCCAACAGGGGTTTCTCTAGGATGCCTTCATACTTTTTTCTAAATATGCAGCAAGCTAGATTTTGTCCTGATCAATTCACATTTGCCACAGTTATTCAGGTTATGCTTGAAACGGGTTTCTTGATGAGGCCTTGGAGTTCTTTCACAGAATTCTTGAACGAAGCATGATATATTGGACTTCATTTATTGCA
GTTTATGCCATGCACGAGCATATCGAGGAAGCGTTGAAACTGTTTTGTGAGATGCAGATATCGAGAATCTAGGGGAATCGACTAACATTTGCTAGTGTTCTTCCAACATTTTCCGATTTGGGGACTTTGGACCATGGCAAGGAGATCCATGAAGAAATACTTAGGAGTGGCTACATCAAGTGTATTTGCATTTTCTTTCC
ATATATGAAGTTTATTTGATGTTGCAGAGGTTTTCTTTTGAAGAAAGGGGCCATTGTTGAAGTTAATCACCCCAAGAGGAGGGCGCATTGCATCTTGGACCACTTATCTCTATATGTTGGGAGCACTTGGGTTTGGTTTGGTCTTTAGAGGACGCACAATTGAGGGAGATACACTTAATCTACACTGCGCGGAGTTCTGC
ATAAGAAAAGAGGGTGCACCCGGTATTCTGGTACAAGTTCGTGGGAACTGGGTGACCATTAGAGAGAGGGTCAAACTATTGCACAAATATTTGGCATCTCAATTCAATTCTGGGAAGTCCTATTTACTTCCAAATCAGCACCAGCATTCAAAATATCTACATTCAGCCTTATGAAAGGGCAAGTCCTATAGCCATTTATC
CATCTTGAAGTCGAGTTATAGTTTCTTCTGTTGGGGGTCTTCATTGCCATCAACATACGGTGGTGATTTCTGTAGCATCATACCACTGGAAAAAGTGCGTTTTGAAGTTGTTCACACTTATCTTATATCTCATACATCAGCTACAGTCAATCTCTGCTAAATCATGGCTATATTGCTACTGATTGGACACACAGAGCAAG
GTATATTACTACTACTAACACACCAACATCATCACAGTTCACAACGCGAGCATTATGGTATCTTTGTGGTGAGTTTATGGCTGCCACGACTTCATCTTGTTGATGGTCACTTCCCATAGTTCTGTTGTTCATCCAAATACAAGGGAATTCCTCCATCATTTCCAGGCACTGAAAGCAGTCTGACAGATGAGCAACAGAAA
CAGCCACTACAATAGCAGCAGGTTCTGCCAACATGCATATCACCTGCACATGCAGAACTTATGACACGGAAAACCCAACTTGAGCTAGGATATTCTATGAGTTATTTTTCCTAACCAGTTATTAATGTACTGTATTTTTTTCCTCTGAGCCAAATTGACATGTTGTTAATGGTACAAGCCATGTGAAATTTTCCTAAATG
GATTGGTTCTAAGGAATTGTAGTAAAATAGGATGTCGGTTATGGAGAACCCATAATCTATTATGGATAGAACCTATTTAACTTGGAGTTCAGGTCATCAAATGTCTTTGGATGGGCATAAACTGAGATGTTCATCTAGTAAAATGCTATTGCCAGTTTTGTTAAATATTTTGGATCTCAAATTTCTGACAATGCTATTAC
TATCTCATTTTGAAGGGAGGTGATACTTTGTGGCAAGCTCAAACTGCATTTTTGTATCCAGATCCCTTTTATGGAAACTATGTTGGATCTTATGGTGCACAAGCCATGGTATTTTATATTTGGCTGAATCACCAATGATTTTTGTAATAGTTTGGTGCATTGGGTTAGAGTCAATGATTGAGATATTCCATCTGCTTGTG
ATTTCCT
>TRINITY_DN48219_c1_g5_i7 from sample A7 / Example unspliced isoform:CGTCATTAGGCAAAAAGTCTCCTCTCCCCGGGACAGCCATCAATGCTCCACACAACACCAAGAAACGAACCTAGAAACAGCAATATAAGCCAACTTCCCCCGATACCAGAAGCCTTCTAACAGAAGACAGAATCCCACACACCTACTCCCAGTGAATTGGACCAACCAGTCGAATCAAGAAATGCAAATCACAAAAATAA
AAAATAGTAATCGCTGGCACAAGCAATGCTATTCAGGATCCAGTCAGAGTAATCCGAATGGAATCGACCAAGAAAATCATCCACCGATCCCTAACCTTAATTTCTCAGCAGAATTCACATCCAAACCGGACTTCCTCGACAGTAATCATCTGATCCTCTGTATACAGCTCACGGCCTTCAATCTTGATGATCCATGGCTG
AATCAAGAAGCCATTTACCGCACTACAATCGCAGATCTCCAGCTCGAATCCACCCGAATCTCAAGGTAATCAGATCCTTTATATTACGAACAACAAAGCATGCGTTCACTCCACCGGCCAATTCCAAAATCAAATTAACAAGCAGATGAGTGGATTCGATGAAGACTGGACAGCGGATTTGTTGAATGCGCGACTGCAAA
CCATCCTCATGCCAAAGGCTGGTGTCAATGGTGTTCAGCCCAGATATTAATTGTGCACAGCTAAATTTCTCCTCGAAGCCACCATAATTCCGCACAGTAATTCCAATCTTGATTAAACgtacatcttcatactgtgaatcttgctcctccctcccgctccttccgatttaaagagagtgcaattgttatattgaatttaa
attttaattctacaacattaatttttttgtttccctccattggaaatttgggggatttcatttcattttcattatgtatgcctagAGTGGAAAAACGCAGGAGGCTCGCTTGGTTTTCGACGAGGAGATGCAGGAACAAAATGTGGTTGCATGGACTACAATTATTAGTGCTTATGCCCAACAGGGGTTTCTCTAGGATG
CCTTCATACTTTTTTCTAAATATGCAGCAAGCTAGATTTTGTCCTGATCAATTCACATTTGCCACAGTTATTCAGGTATGTTCCCATTTGCCAGACATCGTTTTGGGGAAGGCGGTTCACAATAACATAGTTAGAAGTGGGTTTCAGATCTATGTATTTGTGGGAAACACTCTTGTAGATATGTATGTAAAGTGTGGACG
AATATATGATGCACAAAAAGTGTTTGAAAAAATGCCTGAGACAAATGTGGCCACTTCGATTGCCATGATTGCAGGTTATGCTTGAAACGGGTTTCTTGATGAGGCCTTGGAGTTCTTTCACAGAATTCTTGAACGAAGCATGATATATTGGACTTCATTTATTGCAGTTTATGCCATGCACGAGCATATCGAGGAAGCGT
TGAAACTGTTTTGTGAGATGCAGATATCGAGAATCTAGGGGAATCGACTAACATTTGCTAGTGTTCTTCCAACATTTTCCGATTTGGGGACTTTGGACCATGGCAAGGAGATCCATGAAGAAATACTTAGGAGTGGCTACATCAAGTGTATTTGCATTTTCTTTCCATATATGAAGTTTATTTGATGTTGCAGAGGTTTT
CTTTTGAAGAAAGGGGCCATTGTTGAAGTTAATCACCCCAAGAGGAGGGCGCATTGCATCTTGGACCACTTATCTCTATATGTTGGGAGCACTTGGGTTTGGTTTGGTCTTTAGAGGACGCACAATTGAGGGAGATACACTTAATCTACACTGCGCGGAGTTCTGCATAAGAAAAGAGGGTGCACCCGGTATTCTGGTAC
AAGTTCGTGGGAACTGGGTGACCATTAGAGAGAGGGTCAAACTATTGCACAAATATTTGGCATCTCAATTCAATTCTGGGAAGTCCTATTTACTTCCAAATCAGCACCAGCATTCAAAATATCTACATTCAGCCTTATGAAAGGGCAAGTCCTATAGCCATTTATCCATCTTGAAGTCGAGTTATAGTTTCTTCTGTTGG
GGGTCTTCATTGCCATCAACATACGGTGGTGATTTCTGTAGCATCATACCACTGGAAAAAGTGCGTTTTGAAGTTGTTCACACTTATCTTATATCTCATACATCAGCTACAGTCAATCTCTGCTAAATCATGGCTATATTGCTACTGATTGGACACACAGAGCAAGGTATATTACTACTACTAACACACCAACATCATCA
CAGTTCACAACGCGAGCATTATGGTATCTTTGTGGTGAGTTTATGGCTGCCACGACTTCATCTTTTTGATGGTCACGTCCCATACTTCTGTTGTTCATCCAAATACAAGGGAATTCCTCCATCATTTCCAGGCATGTAAATTCTCCTTAATTAATAAATTTGCA