sp|Q94JQ4|RIDA_ARATH ----> Reactive Intermediate Deaminase A, chloroplastic

Intron 1 GTAAGATTAA ... TGCATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	0	227	0	0
A2	0	199	0	0
A3	0	239	0	0
A4	4.33	139	0	6
A5	0	83.5	0	0
A6	0.12	1858	0	2
A7	0	1682.5	0	0
A8	0.21	2158	0	4
A9	0	1919	0	0
A10	0.08	1337	0	1

>TRINITY_DN97037_c0_g1_i2 from sample A4 / Example spliced isoform

GAAAACAAGACAAAAGGACTTGGTTCATTGGCGAAGTCCACGAGGATTCCATTCTCAAAATGGTCCCTTGATATAGACATTGGCCTCTTGATATAGACGTTACTGGGCAGAGAGGACGATTTTTTATGATCTTAGAGACAATATTCGGCAGAATTAATACTCCTGAGCTCCCAGCTGAACTCATACCGAGATAATGTCAT
CCTCCTCCACGATGGCAATGGGAGCAGCAACAGCAACATTGGCAAAATCAGTAGGCCTAAATGGCGGCCCTCTAACAGAGTTGTATAGTCGAGCCCCTGCAATATTTGCACAGGGAGCAGCAGGTTTCTGTTGCCTGACGGCTGCTGCCTCCAAATTAATATTACGCCACAGCAACTCCCATCCCAAGCCTTTTGCATGG
ACCGGAGCAGCGCGCTGCATGGCTTACGCTGCTACTTTGAAGGAGGCCATTCAAACGGATAAGGCACCAGCAGCGTTGGGTCCTTATTCTCAAGCAATTAAAGCTAACAATCTTGTATTTGTTTCTGGTGTACTGGGTCTTATTCCTGAGACTGGAAAGTTCATCTCAGACGGTGTGGAGGAGCAAACAGAACAGGTTCT
GAAAAACATGGGGGAGATTTTGCAAGCAAGTGGTGCTAACTATTCTTCAGTTGTCAAAACAACTATTATGTTGGCGGATCTTAACGATTTCAAGAAAGTAAATGAGATATATGCAAAATATTTTTCATCACCTGCACCAGCCCGGTCGACTTATCAAGTTGCAGCATTACCTTTAAATGCAAAGATTGAAATTGAGTGCA
TTGCTGCCCTGTAGGGTTCAGATTATCTTTTTGCTGTGTTCTTGGGTTTCTTATTACCATTGTTGAAGAGTCATGTACGATCCTTTTCAAAATATATGCTCTTGGATAAGATGTTTTTTTTCAAACTAGACTAATAGAAGGCGGTTCCATGTCTCTACCTAACACTAAACAATTTGCAGTTTTGAAGGATGTTAAAATAA
GTGAGGTCATTTGACTAGAGAAATTCTCGAATCTTTGTGCACTTGTTTTCACATGGATGCGGGCCTCAGGTTTGATGGGTGTATTTATTTTTATTTTTATTTTTGTAAAATTCGAATTTATATTACACTTTGTAGAAAAATTGTACATGTCAATAGCGAAATAGCCTGTTGCATGGTGTGTCCAAATGTCCATGAAAGAA
CAAATGTCCCAAAACTGAAGATTGCCGAGAAGCATTGTTGGCTAAACTAAGTATAGCAGTTTGAAATTCTAACTGTCATAGGGTTCCCCCACAGGCTGGGGGGTATGACCAACAAAACTAAAAC

>TRINITY_DN97037_c0_g1_i3 from sample A4 / Example unspliced isoform:

AGTTGTCAAAACAACTATTATgtaagattaagtattccatttaccatttcttttaaaataaacatttctttgaaaatggtcaaattaagctcaatcttttttattatcctttatcagaagaaatactgtagctctttccattacttgaaataaaagtgttgcatgtaatcaagccaggataggcatcaagaaaaatcccg
aagaactccatgagaactatatcaaaaacaaaatttagctcaacttttatgtaagtatttataagatttggtgcattgcagGTTGGCGGATCTTAACGATTTCAAGAAAGTAAATGAGATATATGCAAAATGTAAGTGGTTTGTTTCTTGGAATCTCAGACATGCCATGAAATATGTCTACGGTTACAGCATTTACACAT
TTTGTACTATAGGTG

Intron 2 GTACGCAAAT ... CTTCATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	20	3	20
A2	51.56	31	4	33
A3	53.66	19	7	22
A4	54.35	21	3	25
A5	50	16	3	16
A6	49.11	316	2	305
A7	50.08	310	7	311
A8	49.38	492	6	480
A9	49.29	357	1	347
A10	48.21	202	12	188

>TRINITY_DN35507_c0_g1_i2 from sample A9 / Example spliced isoform

GATATATGCAAAATTTTGATCCATGTCAAGATGCAGTGATGTTAATTTTTCAGATTGGTCTATCCTGATATTGAAATATGAATTCTCAGTTTCTAAATGTCCAAGCTACCTCATCGAGTTTTGCCTTATTTTTCATCACCTGCACCAGCCCGGTCGACTTATCAAGTTGCAGCATTACCTTTAAATGCAAAGATTGAAAT
TGAGTGCATTGCTGCCCTGTAGGGTTCAGATTATCTTTTTGCTGTGTTCTTGGGTTTCTTATTACCATTGTTGAAGAGTCATGTACGATCCTTTTCAAAATATATGCTCTTGGATAAGATGTTTTTTTTCAAACTAGACTAATAGAAGGCGGTTCCATGTCTCTACCTAACACTAAACAATTTGCAGTTTTGAAGGATGT
TAAAATAAGTGAGGTCATTTGACTAGAGAAATTCTCGAATCTTTGTGCACTTGTTTTCACATGGATGCGGGCCTCAGGTTTGATGGGTGTATTTATTTTTATTTTTATTTTTGTATGTTGTCTTTATCCCGTTTCATTCTGCAAATGAGCAGAACTAAGTTATTCTTGATCTCTTCATAGAAGAGCCTAAAGAGATTGAC
AACTACAGTATTGTGGACATCAAAGATAGTCTTAGACTTTCATTAAC

>TRINITY_DN35507_c0_g1_i3 from sample A9 / Example unspliced isoform:

GATATATGCAAAATTTTGATCCATGTCAAGATGCAGTGATGTTAATTTTTCAGATTGGTCTATCCTGATATTGAAATATGAATTCTCAGTTTCTAAATGTCCAAGCTACCTCATCGAGTTTTGCCTTgtacgcaaatattaccctgtttcaattgattgatgaaacaattatgagtgcttttatgtatgtggaggcgttt
ttatacaaagctgacctatttcatcttttcttcatacagATTTTTCATCACCTGCACCAGCCCGGTCGACTTATCAAGTTGCAGCATTACCTTTAAATGCAAAGATTGAAATTGAGTGCATTGCTGCCCTGTAGGGTTCAGATTATCTTTTTGCTGTGTTCTTGGGTTTCTTATTACCATTGTTGAAGAGTCATGTACGA
TCCTTTTCAAAATATATGCTCTTGGATAAGATGTTTTTTTTCAAACTAGACTAATAGAAGGCGGTTCCATGTCTCTACCTAACACTAAACAATTTGCAGTTTTGAAGGATGTTAAAATAAGTGAGGTCATTTGACTAGAGAAATTCTCGAATCTTTGTGCACTTGTTTTCACATGGATGCGGGCCTCAGGTTTGATGGGT
GTATTTATTTTTATTTTTATTTTTGTATGTTGTCTTTATCCCGTTTCATTCTGCAAATGAGCAGAACTAAGTTATTCTTGATCTCTTCATAGAAGAGCCTAAAGAGATTGACAACTACAGTATTGTGGACATCAAAGATAGTCTTAGACTTTCATTAAC