sp|Q9LLC1|BCCP2_ARATH ----> Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic

Intron 1 GTAACCATGT ... TCTTTGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	21.35	151	45	37
A2	23.38	77	20	27
A3	21.17	121	35	30
A4	17.29	110	12	34
A5	23.38	59	11	25
A6	20	390	77	118
A7	18.5	553	110	141
A8	19.34	465	99	124
A9	19.19	476	101	125
A10	19.73	356	83	92

>TRINITY_DN108386_c0_g1_i5 from sample A3 / Example spliced isoform

AATGGAATGGATGAAGACTTGTGGTTGGAACGGAACTGAATGGAATGGATGAAGACTTGTGGTTGGAACGGAACTGAATGGAATGGATGAAGACTTGTGCTTGGAAGCAGGTTCACTGGGAACAGCTACACGAGCTCAGGGTCTGCTTGGGAAAGGGGTTGTGAGGCATCTGCATTATGGCTTCTCTTACAGATCCTTTC
CAAGGATGGACAGTGTGCATTCATTTAGAAACAAGTGCGGAACACTTTCTAACTTGGGAAGAAGCAAAGTTTGGCTTTCATCCAATGTCAAAGCTTCTCATTCTACATTTGCTATGGCTTCTGATAGGGATGCATCAGAGAGTGGTTCTCTGGGAGAATTAGAAAAAGGAAATCAAAATGGTGCATTATTTCCTGATGGC
ATTGAGTCTTTCATAACGGAGGTCTGTGATGAGACAGACATTGCTGAGATCAAACTTAAGGCTGGAAGCTTTGCAATGCATATACGGCGGAATGTAGAGAAAAGCAAAAGGCCATCTTCTGTGGCGTCCCCATTTACTGCTCCCCCTGTCCCAAGTGAACCAATGGTTGATTCTGATCGCACAGTTACTCCACCACCTTC
ACCAGCACCAAAAGCTCCTCCTACAAAGTCTTTCAACCCATTTACAACAAAATTTTCAGGATCCAAAACATCCAAGTTTGGGCTTTTGGAGGCCGCAGGTGATGAAGGCTTGTGTTTTGTAACTGCTCCGAAGGTTGGCCTGTTCAAAAGAAGCCGAGTCGTGAAGGGAAGGTCTGGAAGACCACTTTGTGAAGAGGGAC
AATCCATAAAAGAAGGGCAGGTTGTATGTTTTTTGAACCAGCTTGGTGGCCAGACACCTGTCACATCAGAAGTGTCTGGAGAAATTGTCAAGATTTTATGGAGCGATGGAGAGCCTGTTGGATATGGTGATCCTCTCATTGCTGTTCTACCTTCATTCCATGGTATTAAGTGATTATAATGATGTTTATAACAGATTTTC
TGAGTAAAGCAGTGTACATTTACTTTGCTGCCTCGGAATCTTGGATTTTAAATCATTCTTATCTAGAGCACACCTTGTGTTGACCAACCAAGGATAGAAGAGTGTGAGGCTCCGAATTAAGAAGAATTTTCCCACTTGAGTGGGAATTTCATCTTTTCTCATTCATTATTAGTTCATTTTTAGTTGGCATGCATTGATTT
TGGATCTACACTTCAGCCAATTGACATTACAACAATTCCTTTCTGCCTGGTTAGATTTCCTTTACAATTTTCTACAGTTCACTGCTATTATCAAATGAAGCATTCTGATTTGAAGTAATACTCAGAATATTGTATACCAATCAATGATGTGATATTACAAATGGTAATTACTCGTTTGTAATGAATGTGGTTTTAAAAGT
AGCATTTGGGTAGTTCAGTGCTTAGCATGAAAATGCTTTATCGAAGATTTATGGCTATCCAAAACACTTAGTTTCCTCCGTAGTAATGTGTTTGTAATTATGAGAATACAATTTTTTTCCATCTTCTTCTTAATTTAGTTGTTGAGGAGATGTGTAGCTGTTATGAAGGAATCGGCCG

>TRINITY_DN108386_c0_g1_i4 from sample A3 / Example unspliced isoform:

AACTTCGTTAGGCAGGAACTAATAATGATAACACAAAAAAATCAGAATCATCTATCGAGCTGACCCACATAGTGAAACTCGATAATTTATTGAGAAGAGGCAAACGATAGTTATGTGTGTCGAGCTGGAGAAATGGCAGGGGACTGCGGAGTTCACGAAGAAACGATCAACCACTCCAACTACTACCACTTGACAGCTCC
AACTAAATATACCTACGTTCTCTCCTTTCATTAAATTAGTTTTCTGTCTTCATTGGCCTCCTACAAGTGTTCAAGACTCTCGGTGTTGGCAGGACGAAACTCAAAATCTTGGATTGGAGCAGAGCAAGAGGCGATCATGGCAGCTTCATGTCCTTGCAGCCCTTTTCACTGTTCACTGGGAACAGCTACACGAGCTCAGG
GTCTGCTTGGGAAAGGGGTTGTGAGGCATCTGCATTATGGCTTCTCTTACAGATCCTTTCCAAGGATGGACAGTGTGCATTCATTTAGAAACAAGTGCGGAACACTTTCCAACCTGGGAAGAAGCAAAGTTTGGCTTTCATCCAATGTCAAAGCTTCTCATTCTACATTTGCTATGGCTTCTGATAGGGATGCATCAGAG
AGTGGTTCTCTGGGAGAATTAGAAAAAGGAAATCAAAATGGTGCATTATTTCCTGATGGCATTGAGTCTTTCATAACGGAGGTCTGTGATGAGACAGACATTGCTGAGATCAAACTTAAGGCTGGAAGCTTTGCAATGCATATACGGCGGAATGTAGAGAAAAGCAAAAGGCCATCTTCTGTGGCGTCCCCATTTACTGC
TCCCCCTGTCCCAAGTGAACCAATGGTTGATTCTGATCGCACAGTTACTCCACCACCTTCACCAGCACCAAAAGCTCCTCCTACAAAGTCTTTCAACCCATTTACAACAAAATTTTCAGGATCCAAAACATCCAAGTTTGGGCTTTTGGAGGCCGCAGGTGATGAAGGCTTGTGTTTTGTAACTGCTCCGAAGgtaacca
tgtttaaatacttttgcaacagagcaagttataagctgctatttccgttgttgtcgaataggaatgaaaatctctctttgacagGTTGGCCTGTTCAAAAGAAGCCGAGTCGTGAAGGGAAGGTCTGGAAGACCACTTTGTGAAGAGGGACAATCCATAAAAGAAGGGCAGGTTGTATGTTTTTTGAACCAGCTTGGTGG
CCAGACACCTGTCACATCAGAAGTGTCTGGAGAAATTGTCAAGATTTTATGGAGCGATGGAGAGCCTGTTGGATATGGTGATCCTCTCATTGCTGTTCTACCTTCATTCCATGGTATTAAGTGATTATAATGATGTTTATAACAGATTTTCTGAGTAAAGCAGTGTACATTTACTTTGCTGCCTCGGAATCTTGGATTTT
AAATCATTCTTATCTAGAGCACACCTTGTGTTGACCAACCAAGGATAGAAGAGTGTGAGGCTCCGAATTAAGAAGAATTTTCCCACTTGAGTGGGAATTTCATCTTTTCTCATTCATTATTAGTTCATTTTTAGTTGGCATGCATTGATTTTGGATCTACACTTCAGCCAATTGACATTACAACAATTCCTTTCTGCCTG
GTTAGATTTCCTTTACAATTTTCTACAGTTCACTGCTATTATCAAATGAAGCATTCTGATTTGAAGTAATACTCAGAATATTGTATACCAATCAATGATGTGATATTACAAATGGTAATTACTCGTTTGTAATGAATGTGGTTTTAAAAGTAGCATTTGGGTAGTTCAGTGCTTAGCATGAAAATGCTTTATCGAAGATT
TATGGCTATCCAAAACACTTAGTTTCCTCCGTAGTAATGTGTTTGTAATTATGAGAATACAATTTTTTTCCATCTTCTTCTTAATTTAGTTGTTGAGGAGATGTGTAGCTGTTATGAAGGAATCGGCCG

Intron 2 GTGAGTAAAT ... TATCATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	10.93	163	0	20
A2	18.52	88	0	20
A3	9.78	83	0	9
A4	10	117	0	13
A5	18.56	79	2	18
A6	10.29	558	0	64
A7	12.2	590	0	82
A8	12.53	656	0	94
A9	11.07	538	0	67
A10	4.26	337	0	15

>TRINITY_DN43677_c0_g1_i2 from sample A7 / Example spliced isoform

GGCAGGAACTAATAATGATAACACAAAAAAATCAGAATCATCTATCGAGCTGACCCACATAGTGAAACTCGATAATTTATTGAGAAGAGGCAAACGATAGTTATGTGTGTCGAGCTGGAGAAATGGCAGGGGACTGCGGAGTTCACGAAGAAACGATCAACCACTCCAACTACTACCACTTGACAGCTCCAACTAAATAT
ACCTACGTTCTCTCCTTTCATTAAATTAGTTTTCTGTCTTCATTGGCCTCCTACAAGTGTTCAAGACTCTCGGTGTTGGCAGGACGAAACTCAAAATCTTGGATTGGAGCAGAGCAAGAGGCGATCATGGCAGCTTCATGTCCTTGCAGCCCTTTTCACTGTTCACTGGGAACATCTACACGAGCTCAGGGTCTGCTTGG
GAAAGGGGTTGTGAGGCATCTGCATTATGGCTTCTCTTACAGATCCTTTCCAAGGATGGACAGTGTGCATTCATTTAGAAACAAGTGCGGAACACTTTCCAACCTGGGAAGAAGCAAAGTTTGGCTTTCATCCAATGTCAAAGCTTCTCATTCTACATTTGCTATGGCTTCTGATAGGGATGCATCAGAGAGTGGTTCTC
TGGGAGAATTAGAAAAAGGAAATCAAAATGGTGCATTATTTCCTGATGGCATTGAGTCTTTCATAACGGAGGTCTGTGATGAGACAGACATTGCTGAGATCAAACTTAAGGCTGGAAGCTTTGCAATGCATATACGGCGGAATGTAGAGAAAAGCAAAAGGCCATCTTCTGTGGCGTCCCCATTTACTGCTCCCCCTGTC
CCAAGTGAACCAATGGTTGATTCTGATCGCACAGTTACTCCACCACCTTCACCAGCACCAAAAGCTCCTCCTACAAAGTCTTTCAACCCATTTACAACAAAATTTTCAGGATCCAAAACATCCAAGTTTGGGCTTTTGGAGGCCGCAGGTGATGAAGGCTTGTGTTTTGTAACTGCTCCGAAGGTTGGCCTGTTCAAAAG
AAGCCGAGTCGTGAAGGGAAGGTCTGGAAGACCACTTTGTGAAGAGGGACAATCCATAAAAGAAGGGCAGGTTGTATGTTTTTTGAACCAGCTTGGTGGCCAGACACCTGTCACATCAGAAGTTTCTGGAGAAATTGTCAAGATTTTATGGAGCGATGGAGAGCCTGTTGGATATGGTGATCCTCTCATTGCTGTTCTAC
CTTCATTCCATGGTATTAAGTGATTATAATGATGTTTATAACAGATTTTCTGAGTAAAGCAGTGTACATTTACTTTGCTGCCTCGGAATGTTGGATTTTAAATCATTCTTATCTAGAGCACACCTTGTGTTGACCAACCAAGGATAGAAGAGTGTGAGGCTCCGAATTAAGAAGAATTTTCCCACTTAAGTGGGAATTTC
ATCTTTTCTCATTCATTATTAGTTCATTTTTAGTTGGCATGCATTGATTTTGGATCTACACTTCAGCCAATTGACATTACAACAATTCCTTTCTGCCTGGTTAGATTTCCTTTACAATTTTCTACAGTTCACTGCTATTATCAAATGAAGCATTCTGATTTGAAGTAATACTCAGAATATTGTATACCAATCAATGATGT
GATATTACAAATGGTAATTACTCGTTTGTAATGAATGTGGTTTTAAAAGTAGCATTTGGGTAGTTCAGTGCTTAGCATGAAAATGCTTTATCGAAGATTTATGGCTATCCAAAACACTTAGTTTCCTCCGTAGTAATGTGTTTGTAATTATGAGAATACAATTTTTTTCCATCTTCTTCTTAATTTAGTTGTTGAGGAGA
TGTGTAGCTGTTATGAAGGAATCGGCCTGGCCTCATGATTTTTTTTTTTGG

>TRINITY_DN43677_c0_g1_i1 from sample A7 / Example unspliced isoform:

TTGGTGGCCAGACACCTGTCACAgtgagtaaatagtttttcttgttgactgtgtatatgctctccagattccagaagtttgacgtccttagtcacactctttcaatgcctagaatgttttagaatgttggtttagggttagtcaggtacatttacatgtttaaccgtatcatgcagTCAGAAGTTTCTGGAGAAATTGTC
AAGATTTTATGGAGCGATGGAGAGCCTGTTGGATATGGTGATCCTCTCATTGCTGTTCTACCTTCATTCCATGGTATTAAGTGATTATAATGATGTTTATAACAGATTTTCTGAGTAAAGCAGTGTACATTTACTTTGCTGCCTCGGAATGTTGGATTTTAAATCATTCTTATCTAGAGCACACCTTGTGTTGACCAACC
AAGGATAGAAGAGTGTGAGGCTCCGAATTAAGAAGAATTTTCCCACTTAAGTGGGAATTTCATCTTTTCTCATTCATTATTAGTTCATTTTTAGTTGGCATGCATTGATTTTGGATCTACACTTCAGCCAATTGACATTACAACAATTCCTTTCTGCCTGGTTAGATTTCCTTTACAATTTTCTACAGTTCACTGCTATT
ATCAAATGAAGCATTCTGATTTGAAGTAATACTCAGAATATTGTATACCAATCAATGATGTGATATTACAAATGGTAATTACTCGTTTGTAATGAATGTGGTTTTAAAAGTAGCATTTGGGTAGTTCAGTGCTTAGCATGAAAATGCTTTATCGAAGATTTATGGCTATCCAAAACACTTAGTTTCCTCCGTAGTAATGT
GTTTGTAATTATGAGAATACAATTTTTTTCCATCTTCTTCTTAATTTAGTTGTTGAGGAGATGTGTAGCTGTTATGAAGGAATCGGCCTGGCCTCATGATTTTTTTTTTTGG