NA ----> NA
Intron 1 GTATATTTCC ... TGTGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.57 | 30 | 14 | 10 |
| A2 | 22.45 | 19 | 1 | 10 |
| A3 | 18.68 | 37 | 13 | 4 |
| A4 | 16.67 | 20 | 5 | 3 |
| A5 | 22.73 | 17 | 5 | 5 |
| A6 | 12 | 11 | 1 | 2 |
| A7 | 13.64 | 38 | 7 | 5 |
| A8 | 19.19 | 40 | 8 | 11 |
| A9 | 16.28 | 36 | 3 | 11 |
| A10 | 17.95 | 32 | 9 | 5 |
>TRINITY_DN118203_c0_g1_i7 from sample A1 / Example spliced isoformGGCAGTCTTAGTGGGAAGGCTGGCTGCAATGGGGATAGTTAGCCCTATTCATTTCACGATTCAGATATGTTTCAATAAGCGATTTCAGTCTGATGTACCCAAATAGCTATTGGTGTCGGTGAATCGTAACACATCAGAAGATAAACTATTTATTCAGGGCGCCCGATCGATAGAGATATGAACCAGTCAGTATTGCTCGA
TCAATAGAGATTTATGCACTTGAATGAACAGGTACCGTCTATTTTAATAAATCTCTCTTAACCATAATAACTCTTGTTAACCATTACTCTTGGACGCGTCGGTTGTTGAAATTATTCTCATTCTGCATCATTGTATTAATATATCTGGTGGCAAACTCTTTCAAGAGACGGATAGGCCCGACTCAACAAAAAATGACTAC
CGTGGATAATCCGGGGAAAGAATCTGATTTTGATCACAACAGAAAACTTGAAACAGAGGATAGAATTGTTGATGAAATGGGTCACGGCGGAAGACAGCGCAGATCAGATGACGGGAAATCGCGCCGCGAGAGGGTTTCTGGTAGAGACAGGGCCGATGCGTATGGGGCGAATTCTGAGGATGAAAAGGGCAACAGAAATA
ATTCTGGAAGTAGGAGAAGTGCGTCCATTGATGGCGATAAAGCTAGGGTTTCTGATGGAAAACCTAGAAATGAACAGGACTATGGCAGGCGGCAACGATCAGATGGTGGGAAATCGGGCCGTGAAAGACACGGTTACGGCGGAAGAGAAAAATCTGTGGACGAAGAAGAAGGGAGGGATTCCAAAGAGGAAAAGAACGGC
AGAGGGCGCTTGCAAAACAGTAGGGATGCAGATAGAAGGGATGAAAAATTTGATACCAGTACGCGCCATCGGCATCGGCACCGTTCTGATCATGATACTGACGATGACAATAATGAAGAGAAGAGAAATAAAACCAAGGAAAAGGGAGGAAGATATGCAGGTGGTCCTTCAAATGTAGCAAGCGGGCAGGAGGAGGAAAA
CGAGGACGATGATCGTGCGAATGGCAATCGGAGAGATGATTATAATAGGAAACGGTTTTCGGATTACGAAGCAGATAGAGGCAGCAAGGACAGGTACCCAGATGGCAGGAGAAAGCATTCTAGGGAAGAATCTGACAGAGTAAGGGATAGGCACTCAGATTATGACAGGAAAAGACATTCCCAGGATGAATTCGACAGAG
GCAGGGGAAGATATGAAGATAGTGATGAAAGGCATGAAGAAAAGAAAAGGCGTTATGATGTTGATGATAAAAGATACAGGGACACTGCTGAACACAAGCTGAATCAAAGCAGTGGAAAATCTGAAGACAATTACAAGAGATCAAGGTCGGGCCTTTCACACAAGGACCCAGATGTGAGGGTCGATAAACGTAACCATGAA
CAGAGGAGGGATGATGAAACTCCTAGAAATGGAACAGTAGGGGCAAGAGAAGGAAACACTACTGTAGAATTGCCAAAAGCGAATCCCCCCGTTGTTTCAATTCGAAAAGAGGGAGTTGCAAACACTGAAAAGGCGCTTGGAAGAAGTGGTGGTGTGTATGTTCCTCCTTTCAAGCTGGCCCAAATGATGAAAGATTTGCA
AGATAAGAGCAGCTTGGAATATCAGCGTATGTCTTGGGATGCTCTTCGTAAGAGTATCAATGGGCTTGTAAACAAAGTGAATGCATCAAACATTAAAAACATTATTCCAGAGCTCTTTGCAGAGAACCTCATTCGGGGAAGAGGACTATTTTGTAGGTCATGTATGAAATCCCAAATGGCATCACCTGGATTTACTGATG
TTTTCGCTGCGTTGGTTGCTGTGGTGAATACAAAGTTTCCAGAAGTTGGTAATCTACTTTTGAGAAGAATTATTTTGCAGCTTAAAAGGGCTTTCAAACGCAATGACAAGCCTCTGTTATTGGCAGCAACAAAATTCATAGCTCATCTAGCGAACCAACAAGTTGCACATGAGATCATTACTTTGGAACTTCTTACTGTT
TTACTGGAGAATCCTACAGACGATAGTGTCGAGGTTGCCGTTGGATTTGTGAAAGAATGCGGGTCCATGCTTCAAGACCTTTCACCTCAAGGCCTTTATGGAATTTTTGAACGATTTAGGGGTATTCTTCACGAGGGAGAAATTGACAAACGAGTGCAGTTTCTGATTGAAGGACTTTTTGCAATTCGCAAAATCAACTT
CCAGGGTTATCCAGCTGTTCGTCCAGAACTCGATCTTGTGGAGCAAGAAGATCAGTTTACCCATGAATTCTCCTTGGAAGATGAGCTTGATCAAGAAGTTGGCCTTGATATTTTCAAGCCAGATCCAGATTTTTTGGAGCATGAGAAAGCTTATGAAAACCTTAAGAAAGACATTCTTGGAGATGAATCTTCAGATGAAG
CAGAAGGTGAGAATGATTCAGGTCAGGAGTCAGATGATGATGAAGATGAAGAGGAGGAACAAGAGGAACAGTTACGCATACAGGATGAAACTGAGACAAACTTGGTAAATTTAAGACGTACAATTTACTTGACAATAATGTCAAGTGTTGATTTTGAGGAAGCTGGTCATAAGCTGCTAAAGATCAAGCTTGAACCTGGT
CAAGAGATGGAGTTATGCATCATGTTGTTAGAATGCTGCAGTCAAGAGAGAACATACCTGCGTTACTATGGTCTCCTGGGGCAGAGATTTTGTATGATCAACAAAATTTATCAGGAGTTTTTTGATAAGTGTTTTGTACAACAGTATTCTATGATCCACAGGCTGGAAACAAATAAGTTGCGTAATGTTGCAAAATTCTT
TGCACATTTACTGGGCACAGATGCCCTTCCATGGCATTGTCTTGCTTATATACGTCTGACAGAAGAGGATACAACTTCATCATCTCGCATTTTTATAAAGATCCTCTTCCAGGAGCTGGCAGAGCAGCTTGGCATACGATTGCTCAATGAAAGGTTGAATGAGCCGACAATGCAGGATTCATTTGAGTCAATTTTTCCGA
AGGACAATCCTAAGAACTCACGATTTGCCATCAACTTTTTCACCTCCATTGGTCTTGGTGGTATCACTGAGAGTTTGCGTGAATATTTGAAGAATATGCCAAGACTTATAATGCAGCAGCAGAAGCCCATTTCTGAATCTGATGCCTCAAGTTCTGACGATGAATCCTCTAGTTCTACAGGTTCATCTGACTCTGACTCT
GATAGCTCAGAATCAGAGTCAGAGAGTGAGAGTAAAAGAGAGATTGAGCGAAAGAGGAAAAAGAAAAATACCAGGGTTTCTTCTGCTTCTGAAAGTGAGAGTGGAAGTGAAAGCGAGGACGAGAGAAAGAGAAAAAGAAAGAAGACCAGGATTTCTTCTCATCCTGAGAGTGAAAGTGAAAGTGATGGTGATAGAAAGAA
AACGAAAAGGAAGAGAAGGTAGTAGAAGTCCTTCCGTTCAGTGAAAGACTTTGGCGGAGGCTCAGGAATTGAAGGGAATGCTACAGCTTCTTTAGTTTTGTTTCCTACTGTAATTATAAAAATGATGAGTTATCACTTAAGAATGATCAATAGTGCTTCAAAGAATTCAATGATTCGCTGGTCAATTATTATTCTGAGTT
GAAGCATATCCATATAGAACATTCAGTTTTCCACCTTCAGCAAGTTAAATGAAGAGTTTATTCTTTTGCTCGAGTTCCAATTAGCTTCCTGGAGAGGATTTCTAATGGAATGGTTAGTTTGAACTTTGTACATTTAATGTGGGATTTTTGAGAATGGTTTTTATTTTTGCTGGGTTTAATACTTTGTGCATTTTAAATAG
TGTCAGAAACACTTCAAAAAATCACACTTGCTATACAATTCTAAAT
>TRINITY_DN118203_c0_g1_i8 from sample A1 / Example unspliced isoform:GGCAGTCTTAGTGGGAAGGCTGGCTGCAATGGGGATAGTTAGCCCTATTCATTTCACGATTCAGATATGTTTCAATAAGCGATTTCAGTCTGATGTACCCAAATAGCTATTGGTGTCGGTGAATCGTAACACATCAGAAGATAAACTATTTATTCAGGGCGCCCGATCGATAGAGATATGAACCAGTCAGTATTGCTCGA
TCAATAGAGATTTATGCACTTGAATGAACAGGTACCGTCTATTTTAATAAATCTCTCTTAACCATAATAACTCTTGTTAACCATTACTCTTGGACGCGTCGGTTGTTGAAATTATTCTCATTCTGCATCATTGTATTAATATATCTGGTGGCAAACTCTTTCAAGAGACGGATAGGCCCGACTCAACAAAAAATGACTAC
CGTGGATAATCCGGGGAAAGAATCTGATTTTGATCACAACAGAAAACTTGAAACAGAGGATAGAATTGTTGATGAAATGGGTCACGGCGGAAGACAGCGCAGATCAGATGACGGGAAATCGCGCCGCGAGAGGGTTTCTGGTAGAGACAGGGCCGATGCGTATGGGGCGAATTCTGAGGATGAAAAGGGCAACAGAAATA
ATTCTGGAAGTAGGAGAAGTGCGTCCATTGATGGCGATAAAGCTAGGGTTTCTGATGGAAAACCTAGAAATGAACAGGACTATGGCAGGCGGCAACGATCAGATGGTGGGAAATCGGGCCGTGAAAGACACGGTTACGGCGGAAGAGAAAAATCTGTGGACGAAGAAGAAGGGAGGGATTCCAAAGAGGAAAAGAACGGC
AGAGGGCGCTTGCAAAACAGTAGGGATGCAGATAGAAGGGATGAAAAATTTGATACCAGTACGCGCCATCGGCATCGGCACCGTTCTGATCATGATACTGACGATGACAATAATGAAGAGAAGAGAAATAAAACCAAGGAAAAGGGAGGAAGATATGCAGGTGGTCCTTCAAATGTAGCAAGCGGGCAGGAGGAGGAAAA
CGAGGACGATGATCGTGCGAATGGCAATCGGAGAGATGATTATAATAGGAAACGGTTTTCGGATTACGAAGCAGATAGAGGCAGCAAGGACAGGTACCCAGATGGCAGGAGAAAGCATTCTAGGGAAGAATCTGACAGAGTAAGGGATAGGCACTCAGATTATGACAGGAAAAGACATTCCCAGGATGAATTCGACAGAG
GCAGGGGAAGATATGAAGATAGTGATGAAAGGCATGAAGAAAAGAAAAGGCGTTATGATGTTGATGATAAAAGATACAGGGACACTGCTGAACACAAGCTGAATCAAAGCAGTGGAAAATCTGAAGACAATTACAAGAGATCAAGGTCGGGCCTTTCACACAAGGACCCAGATGTGAGGGTCGATAAACGTAACCATGAA
CAGAGGAGGGATGATGAAACTCCTAGAAATGGAACAGTAGGGGCAAGAGAAGGAAACACTACTGTAGAATTGCCAAAAGCGAATCCCCCCGTTGTTTCAATTCGAAAAGAGGGAGTTGCAAACACTGAAAAGGCGCTTGGAAGAAGTGGTGGTGTGTATGTTCCTCCTTTCAAGCTGGCCCAAATGATGAAAGATTTGCA
AGATAAGAGCAGCTTGGAATATCAGCGTATGTCTTGGGATGCTCTTCGTAAGAGTATCAATGGGCTTGTAAACAAAGTGAATGCATCAAACATTAAAAACATTATTCCAGAGCTCTTTGCAGAGAACCTCATTCGGGGAAGAGGACTATTTTGTAGGTCATGTATGAAATCCCAAATGGCATCACCTGGATTTACTGATG
TTTTCGCTGCGTTGGTTGCTGTGGTGAATACAAAGTTTCCAGAAGTTGGTAATCTACTTTTGAGAAGAATTATTTTGCAGCTTAAAAGGGCTTTCAAACGCAATGACAAGCCTCTGTTATTGGCAGCAACAAAATTCATAGCTCATCTAGCGAACCAACAAGTTGCACATGAGATCATTACTTTGGAACTTCTTACTGTT
TTACTGGAGAATCCTACAGACGATAGTGTCGAGGTTGCCGTTGGATTTGTGAAAGAATGCGGGTCCATGCTTCAAGACCTTTCACCTCAAGGCCTTTATGGAATTTTTGAACGATTTAGGGGTATTCTTCACGAGGGAGAAATTGACAAACGAGTGCAGTTTCTGATTGAAGGACTTTTTGCAATTCGCAAAATCAACTT
CCAGGGTTATCCAGCTGTTCGTCCAGAACTCGATCTTGTGGAGCAAGAAGATCAGTTTACCCATGAATTCTCCTTGGAAGATGAGCTTGATCAAGAAGTTGGCCTTGgtatatttccttagaatttattctttaacagggtgtcttattttaaaattttcataatttgtatgcctttatcattacgttttcaatatgcaa
tattaaagtcttatttttgcatctttgggatgtgtaacagATATTTTCAAGCCAGATCCAGATTTTTTGGAGCATGAGAAAGCTTATGAAAACCTTAAGAAAGACATTCTTGGAGATGAATCTTCAGATGAAGCAGAAGGTGAGAATGATTCAGGTCAGGAGTCAGATGATGATGAAGATGAAGAGGAGGAACAAGAGGA
ACAGTTACGCATACAGGATGAAACTGAGACAAACTTGGTAAATTTAAGACGTACAATTTACTTGACAATAATGTCAAGTGTTGATTTTGAGGAAGCTGGTCATAAGCTGCTAAAGATCAAGCTTGAACCTGGTCAAGAGATGGAGTTATGCATCATGTTGTTAGAATGCTGCAGTCAAGAGAGAACATACCTGCGTTACT
ATGGTCTCCTGGGGCAGAGATTTTGTATGATCAACAAAATTTATCAGGAGTTTTTTGATAAGTGTTTTGTACAACAGTATTCTATGATCCACAGGCTGGAAACAAATAAGTTGCGTAATGTTGCAAAATTCTTTGCACATTTACTGGGCACAGATGCCCTTCCATGGCATTGTCTTGCTTATATACGTCTGACAGAAGAG
GATACAACTTCATCATCTCGCATTTTTATAAAGATCCTCTTCCAGGAGCTGGCAGAGCAGCTTGGCATACGATTGCTCAATGAAAGGTTGAATGAGCCGACAATGCAGGATTCATTTGAGTCAATTTTTCCGAAGGACAATCCTAAGAACTCACGATTTGCCATCAACTTTTTCACCTCCATTGGTCTTGGTGGTATCAC
TGAGAGTTTGCGTGAATATTTGAAGAATATGCCAAGACTTATAATGCAGCAGCAGAAGCCCATTTCTGAATCTGATGCCTCAAGTTCTGACGATGAATCCTCTAGTTCTACAGGTTCATCTGACTCTGACTCTGATAGCTCAGAATCAGAGTCAGAGAGTGAGAGTAAAAGAGAGATTGAGCGAAAGAGGAAAAAGAAAA
ATACCAGGGTTTCTTCTGCTTCTGAAAGTGAGAGTGGAAGTGAAAGCGAGGACGAGAGAAAGAGAAAAAGAAAGAAGACCAGGATTTCTTCTCATCCTGAGAGTGAAAGTGAAAGTGATGGTGATAGAAAGAAAACGAAAAGGAAGAGAAGGTAGTAGAAGTCCTTCCGTTCAGTGAAAGACTTTGGCGGAGGCTCAGGA
ATTGAAGGGAATGCTACAGCTTCTTTAGTTTTGTTTCCTACTGTAATTATAAAAATGATGAGTTATCACTTAAGAATGATCAATAGTGCTTCAAAGAATTCAATGATTCGCTGGTCAATTATTATTCTGAGTTGAAGCATATCCATATAGAACATTCAGTTTTCCACCTTCAGCAAGTTAAATGAAGAGTTTATTCTTTT
GCTCGAGTTCCAATTAGCTTCCTGGAGAGGATTTCTAATGGAATGGTTAGTTTGAACTTTGTACATTTAATGTGGGATTTTTGAGAATGGTTTTTATTTTTGCTGGGTTTAATACTTTGTGCATTTTAAATAGTGTCAGAAACACTTCAAAAAATCACACTTGCTATACAATTCTAAAT
Intron 2 GTACCGTCTA ... CTCTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.85 | 18 | 27 | 15 |
| A2 | 47.06 | 18 | 15 | 17 |
| A3 | 63.22 | 16 | 37 | 18 |
| A4 | 45.76 | 16 | 17 | 10 |
| A5 | 44.83 | 8 | 3 | 10 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 48.39 | 8 | 5 | 10 |
| A8 | 16.67 | 10 | 2 | 2 |
| A9 | 46.34 | 11 | 4 | 15 |
| A10 | 36 | 8 | 1 | 8 |
>TRINITY_DN118203_c0_g1_i6 from sample A1 / Example spliced isoformGGCAGTCTTAGTGGGAAGGCTGGCTGCAATGGGGATAGTTAGCCCTATTCATTTCACGATTCAGATATGTTTCAATAAGCGATTTCAGTCTGATGTACCCAAATAGCTATTGGTGTCGGTGAATCGTAACACATCAGAAGATAAACTATTTATTCAGGGCGCCCGATCGATAGAGATATGAACCAGTCAGTATTGCTCGA
TCAATAGAGATTTATGCACTTGAATGAACAGAGACGGATAGGCCCGACTCAACAAAAAATGACTACCGTGGATAATCCGGGGAAAGAATCTGATTTTGATCACAACAGAAAACTTGAAACAGAGGATAGAATTGTTGATGAAATGGGTCACGGCGGAAGACAGCGCAGATCAGATGACGGGAAATCGCGCCGCGAGAGGG
TTTCTGGTAGAGACAGGGCCGATGCGTATGGGGCGAATTCTGAGGATGAAAAGGGCAACAGAAATAATTCTGGAAGTAGGAGAAGTGCGTCCATTGATGGCGATAAAGCTAGGGTTTCTGATGGAAAACCTAGAAATGAACAGGACTATGGCAGGCGGCAACGATCAGATGGTGGGAAATCGGGCCGTGAAAGACACGGT
TACGGCGGAAGAGAAAAATCTGTGGACGAAGAAGAAGGGAGGGATTCCAAAGAGGAAAAGAACGGCAGAGGGCGCTTGCAAAACAGTAGGGATGCAGATAGAAGGGATGAAAAATTTGATACCAGTACGCGCCATCGGCATCGGCACCGTTCTGATCATGATACTGACGATGACAATAATGAAGAGAAGAGAAATAAAAC
CAAGGAAAAGGGAGGAAGATATGCAGGTGGTCCTTCAAATGTAGCAAGCGGGCAGGAGGAGGAAAACGAGGACGATGATCGTGCGAATGGCAATCGGAGAGATGATTATAATAGGAAACGGTTTTCGGATTACGAAGCAGATAGAGGCAGCAAGGACAGGTACCCAGATGGCAGGAGAAAGCATTCTAGGGAAGAATCTG
ACAGAGTAAGGGATAGGCACTCAGATTATGACAGGAAAAGACATTCCCAGGATGAATTCGACAGAGGCAGGGGAAGATATGAAGATAGTGATGAAAGGCATGAAGAAAAGAAAAGGCGTTATGATGTTGATGATAAAAGATACAGGGACACTGCTGAACACAAGCTGAATCAAAGCAGTGGAAAATCTGAAGACAATTAC
AAGAGATCAAGGTCGGGCCTTTCACACAAGGACCCAGATGTGAGGGTCGATAAACGTAACCATGAACAGAGGAGGGATGATGAAACTCCTAGAAATGGAACAGTAGGGGCAAGAGAAGGAAACACTACTGTAGAATTGCCAAAAGCGAATCCCCCCGTTGTTTCAATTCGAAAAGAGGGAGTTGCAAACACTGAAAAGGC
GCTTGGAAGAAGTGGTGGTGTGTATGTTCCTCCTTTCAAGCTGGCCCAAATGATGAAAGATTTGCAAGATAAGAGCAGCTTGGAATATCAGCGTATGTCTTGGGATGCTCTTCGTAAGAGTATCAATGGGCTTGTAAACAAAGTGAATGCATCAAACATTAAAAACATTATTCCAGAGCTCTTTGCAGAGAACCTCATTC
GGGGAAGAGGACTATTTTGTAGGTCATGTATGAAATCCCAAATGGCATCACCTGGATTTACTGATGTTTTCGCTGCGTTGGTTGCTGTGGTGAATACAAAGTTTCCAGAAGTTGGTAATCTACTTTTGAGAAGAATTATTTTGCAGCTTAAAAGGGCTTTCAAACGCAATGACAAGCCTCTGTTATTGGCAGCAACAAAA
TTCATAGCTCATCTAGCGAACCAACAAGTTGCACATGAGATCATTACTTTGGAACTTCTTACTGTTTTACTGGAGAATCCTACAGACGATAGTGTCGAGGTTGCCGTTGGATTTGTGAAAGAATGCGGGTCCATGCTTCAAGACCTTTCACCTCAAGGCCTTTATGGAATTTTTGAACGATTTAGGGGTATTCTTCACGA
GGGAGAAATTGACAAACGAGTGCAGTTTCTGATTGAAGGACTTTTTGCAATTCGCAAAATCAACTTCCAGGGTTATCCAGCTGTTCGTCCAGAACTCGATCTTGTGGAGCAAGAAGATCAGTTTACCCATGAATTCTCCTTGGAAGATGAGCTTGATCAAGAAGTTGGCCTTGATATTTTCAAGCCAGATCCAGATTTTT
TGGAGCATGAGAAAGCTTATGAAAACCTTAAGAAAGACATTCTTGGAGATGAATCTTCAGATGAAGCAGAAGGTGAGAATGATTCAGGTCAGGAGTCAGATGATGATGAAGATGAAGAGGAGGAACAAGAGGAACAGTTACGCATACAGGATGAAACTGAGACAAACTTGGTAAATTTAAGACGTACAATTTACTTGACA
ATAATGTCAAGTGTTGATTTTGAGGAAGCTGGTCATAAGCTGCTAAAGATCAAGCTTGAACCTGGTCAAGAGATGGAGTTATGCATCATGTTGTTAGAATGCTGCAGTCAAGAGAGAACATACCTGCGTTACTATGGTCTCCTGGGGCAGAGATTTTGTATGATCAACAAAATTTATCAGGAGTTTTTTGATAAGTGTTT
TGTACAACAGTATTCTATGATCCACAGGCTGGAAACAAATAAGTTGCGTAATGTTGCAAAATTCTTTGCACATTTACTGGGCACAGATGCCCTTCCATGGCATTGTCTTGCTTATATACGTCTGACAGAAGAGGATACAACTTCATCATCTCGCATTTTTATAAAGATCCTCTTCCAGGAGCTGGCAGAGCAGCTTGGCA
TACGATTGCTCAATGAAAGGTTGAATGAGCCGACAATGCAGGATTCATTTGAGTCAATTTTTCCGAAGGACAATCCTAAGAACTCACGATTTGCCATCAACTTTTTCACCTCCATTGGTCTTGGTGGTATCACTGAGAGTTTGCGTGAATATTTGAAGAATATGCCAAGACTTATAATGCAGCAGCAGAAGCCCATTTCT
GAATCTGATGCCTCAAGTTCTGACGATGAATCCTCTAGTTCTACAGGTTCATCTGACTCTGACTCTGATAGCTCAGAATCAGAGTCAGAGAGTGAGAGTAAAAGAGAGATTGAGCGAAAGAGGAAAAAGAAAAATACCAGGGTTTCTTCTGCTTCTGAAAGTGAGAGTGGAAGTGAAAGCGAGGACGAGAGAAAGAGAAA
AAGAAAGAAGACCAGGATTTCTTCTCATCCTGAGAGTGAAAGTGAAAGTGATGGTGATAGAAAGAAAACGAAAAGGAAGAGAAGGTAGTAGAAGTCCTTCCGTTCAGTGAAAGACTTTGGCGGAGGCTCAGGAATTGAAGGGAATGCTACAGCTTCTTTAGTTTTGTTTCCTACTGTAATTATAAAAATGATGAGTTATC
ACTTAAGAATGATCAATAGTGCTTCAAAGAATTCAATGATTCGCTGGTCAATTATTATTCTGAGTTGAAGCATATCCATATAGAACATTCAGTTTTCCACCTTCAGCAAGTTAAATGAAGAGTTTATTCTTTTGCTCGAGTTCCAATTAGCTTCCTGGAGAGGATTTCTAATGGAATGGTTAGTTTGAACTTTGTACATT
TAATGTGGGATTTTTGAGAATGGTTTTTATTTTTGCTGGGTTTAATACTTTGTGCATTTTAAATAGTGTCAGAAACACTTCAAAAAATCACACTTGCTATACAATTCTAAAT
>TRINITY_DN118203_c0_g1_i2 from sample A1 / Example unspliced isoform:GGCAGTCTTAGTGGGAAGGCTGGCTGCAATGGGGATAGTTAGCCCTATTCATTTCACGATTCAGATATGTTTCAATAAGCGATTTCAGTCTGATGTACCCAAATAGCTATTGGTGTCGGTGAATCGTAACACATCAGAAGATAAACTATTTATTCAGGGCGCCCGATCGATAGAGATATGAACCAGTCAGTATTGCTCGA
TCAATAGAGATTTATGCACTTGAATGAACAGgtaccgtctattttaataaatctctcttaaccataataactcttgttaaccattactcttggacgcgtcggttgttgaaattattctcattctgcatcattgtattaatatatctggtggcaaactctttcaagAGACGGATAGGCCCGACTCAACAAAAAATGACTAC
CGTGGATAATCCGGGGAAAGAATCTGATTTTGATCACAACAGAAAACTTGAAACAGAGGATAGAATTGTTGATGAAATGGGTCACGGCGGAAGACAGCGCAGATCAGATGACGGGAAATCGCGCCGCGAGAGGGTTTCTGGTAGAGACAGGGCCGATGCGTATGGGGCGAATTCTGAGGATGAAAAGGGCAACAGAAATA
ATTCTGGAAGTAGGAGAAGTGCGTCCATTGATGGCGATAAAGCTAGGGTTTCTGATGGAAAACCTAGAAATGAACAGGACTATGGCAGGCGGCAACGATCAGATGGTGGGAAATCGGGCCGTGAAAGACACGGTTACGGCGGAAGAGAAAAATCTGTGGACGAAGAAGAAGGGAGGGATTCCAAAGAGGAAAAGAACGGC
AGAGGGCGCTTGCAAAACAGTAGGGATGCAGATAGAAGGGATGAAAAATTTGATACCAGTACGCGCCATCGGCATCGGCACCGTTCTGATCATGATACTGACGATGACAATAATGAAGAGAAGAGAAATAAAACCAAGGAAAAGGGAGGAAGATATGCAGGTGGTCCTTCAAATGTAGCAAGCGGGCAGGAGGAGGAAAA
CGAGGACGATGATCGTGCGAATGGCAATCGGAGAGATGATTATAATAGGAAACGGTTTTCGGATTACGAAGCAGATAGAGGCAGCAAGGACAGGTACCCAGATGGCAGGAGAAAGCATTCTAGGGAAGAATCTGACAGAGTAAGGGATAGGCACTCAGATTATGACAGGAAAAGACATTCCCAGGATGAATTCGACAGAG
GCAGGGGAAGATATGAAGATAGTGATGAAAGGCATGAAGAAAAGAAAAGGCGTTATGATGTTGATGATAAAAGATACAGGGACACTGCTGAACACAAGCTGAATCAAAGCAGTGGAAAATCTGAAGACAATTACAAGAGATCAAGGTCGGGCCTTTCACACAAGGACCCAGATGTGAGGGTCGATAAACGTAACCATGAA
CAGAGGAGGGATGATGAAACTCCTAGAAATGGAACAGTAGGGGCAAGAGAAGGAAACACTACTGTAGAATTGCCAAAAGCGAATCCCCCCGTTGTTTCAATTCGAAAAGAGGGAGTTGCAAACACTGAAAAGGCGCTTGGAAGAAGTGGTGGTGTGTATGTTCCTCCTTTCAAGCTGGCCCAAATGATGAAAGATTTGCA
AGATAAGAGCAGCTTGGAATATCAGCGTATGTCTTGGGATGCTCTTCGTAAGAGTATCAATGGGCTTGTAAACAAAGTGAATGCATCAAACATTAAAAACATTATTCCAGAGCTCTTTGCAGAGAACCTCATTCGGGGAAGAGGACTATTTTGTAGGTCATGTATGAAATCCCAAATGGCATCACCTGGATTTACTGATG
TTTTCGCTGCGTTGGTTGCTGTGGTGAATACAAAGTTTCCAGAAGTTGGTAATCTACTTTTGAGAAGAATTATTTTGCAGCTTAAAAGGGCTTTCAAACGCAATGACAAGCCTCTGTTATTGGCAGCAACAAAATTCATAGCTCATCTAGCGAACCAACAAGTTGCACATGAGATCATTACTTTGGAACTTCTTACTGTT
TTACTGGAGAATCCTACAGACGATAGTGTCGAGGTATAGAATTCTAGCTTATGGTTTCATTGTTTGTGATCGTGCTTAAAGGATACTAGGTGCTTTGGCATTTGCTCAATATGATTCAGGCGGGTTTTCTCTCGAACATATGTCGATATTTAAAATAGGATTTCTTCTCTTCAGGTTGCCGTTGGATTTGTGAAAGAATG
CGGGTCCATGCTTCAAGACCTTTCACCTCAAGGCCTTTATGGAATTTTTGAACGATTTAGGGGTATTCTTCACGAGGGAGAAATTGACAAACGAGTGCAGTTTCTGATTGAAGGACTTTTTGCAATTCGCAAAATCAACTTCCAGGGTTATCCAGCTGTTCGTCCAGAACTCGATCTTGTGGAGCAAGAAGATCAGTTTA
CCCATGAATTCTCCTTGGAAGATGAGCTTGATCAAGAAGTTGGCCTTG
Intron 3 GTATAGAATT ... TTCTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.93 | 34 | 8 | 10 |
| A2 | 18.28 | 38 | 10 | 7 |
| A3 | 15.07 | 31 | 8 | 3 |
| A4 | 18.68 | 37 | 12 | 5 |
| A5 | 27.27 | 8 | 5 | 1 |
| A6 | 14.29 | 9 | 0 | 3 |
| A7 | 20 | 40 | 9 | 11 |
| A8 | 19.4 | 27 | 5 | 8 |
| A9 | 20.55 | 29 | 12 | 3 |
| A10 | 19.05 | 17 | 7 | 1 |
>TRINITY_DN118203_c0_g1_i7 from sample A1 / Example spliced isoformGGCAGTCTTAGTGGGAAGGCTGGCTGCAATGGGGATAGTTAGCCCTATTCATTTCACGATTCAGATATGTTTCAATAAGCGATTTCAGTCTGATGTACCCAAATAGCTATTGGTGTCGGTGAATCGTAACACATCAGAAGATAAACTATTTATTCAGGGCGCCCGATCGATAGAGATATGAACCAGTCAGTATTGCTCGA
TCAATAGAGATTTATGCACTTGAATGAACAGGTACCGTCTATTTTAATAAATCTCTCTTAACCATAATAACTCTTGTTAACCATTACTCTTGGACGCGTCGGTTGTTGAAATTATTCTCATTCTGCATCATTGTATTAATATATCTGGTGGCAAACTCTTTCAAGAGACGGATAGGCCCGACTCAACAAAAAATGACTAC
CGTGGATAATCCGGGGAAAGAATCTGATTTTGATCACAACAGAAAACTTGAAACAGAGGATAGAATTGTTGATGAAATGGGTCACGGCGGAAGACAGCGCAGATCAGATGACGGGAAATCGCGCCGCGAGAGGGTTTCTGGTAGAGACAGGGCCGATGCGTATGGGGCGAATTCTGAGGATGAAAAGGGCAACAGAAATA
ATTCTGGAAGTAGGAGAAGTGCGTCCATTGATGGCGATAAAGCTAGGGTTTCTGATGGAAAACCTAGAAATGAACAGGACTATGGCAGGCGGCAACGATCAGATGGTGGGAAATCGGGCCGTGAAAGACACGGTTACGGCGGAAGAGAAAAATCTGTGGACGAAGAAGAAGGGAGGGATTCCAAAGAGGAAAAGAACGGC
AGAGGGCGCTTGCAAAACAGTAGGGATGCAGATAGAAGGGATGAAAAATTTGATACCAGTACGCGCCATCGGCATCGGCACCGTTCTGATCATGATACTGACGATGACAATAATGAAGAGAAGAGAAATAAAACCAAGGAAAAGGGAGGAAGATATGCAGGTGGTCCTTCAAATGTAGCAAGCGGGCAGGAGGAGGAAAA
CGAGGACGATGATCGTGCGAATGGCAATCGGAGAGATGATTATAATAGGAAACGGTTTTCGGATTACGAAGCAGATAGAGGCAGCAAGGACAGGTACCCAGATGGCAGGAGAAAGCATTCTAGGGAAGAATCTGACAGAGTAAGGGATAGGCACTCAGATTATGACAGGAAAAGACATTCCCAGGATGAATTCGACAGAG
GCAGGGGAAGATATGAAGATAGTGATGAAAGGCATGAAGAAAAGAAAAGGCGTTATGATGTTGATGATAAAAGATACAGGGACACTGCTGAACACAAGCTGAATCAAAGCAGTGGAAAATCTGAAGACAATTACAAGAGATCAAGGTCGGGCCTTTCACACAAGGACCCAGATGTGAGGGTCGATAAACGTAACCATGAA
CAGAGGAGGGATGATGAAACTCCTAGAAATGGAACAGTAGGGGCAAGAGAAGGAAACACTACTGTAGAATTGCCAAAAGCGAATCCCCCCGTTGTTTCAATTCGAAAAGAGGGAGTTGCAAACACTGAAAAGGCGCTTGGAAGAAGTGGTGGTGTGTATGTTCCTCCTTTCAAGCTGGCCCAAATGATGAAAGATTTGCA
AGATAAGAGCAGCTTGGAATATCAGCGTATGTCTTGGGATGCTCTTCGTAAGAGTATCAATGGGCTTGTAAACAAAGTGAATGCATCAAACATTAAAAACATTATTCCAGAGCTCTTTGCAGAGAACCTCATTCGGGGAAGAGGACTATTTTGTAGGTCATGTATGAAATCCCAAATGGCATCACCTGGATTTACTGATG
TTTTCGCTGCGTTGGTTGCTGTGGTGAATACAAAGTTTCCAGAAGTTGGTAATCTACTTTTGAGAAGAATTATTTTGCAGCTTAAAAGGGCTTTCAAACGCAATGACAAGCCTCTGTTATTGGCAGCAACAAAATTCATAGCTCATCTAGCGAACCAACAAGTTGCACATGAGATCATTACTTTGGAACTTCTTACTGTT
TTACTGGAGAATCCTACAGACGATAGTGTCGAGGTTGCCGTTGGATTTGTGAAAGAATGCGGGTCCATGCTTCAAGACCTTTCACCTCAAGGCCTTTATGGAATTTTTGAACGATTTAGGGGTATTCTTCACGAGGGAGAAATTGACAAACGAGTGCAGTTTCTGATTGAAGGACTTTTTGCAATTCGCAAAATCAACTT
CCAGGGTTATCCAGCTGTTCGTCCAGAACTCGATCTTGTGGAGCAAGAAGATCAGTTTACCCATGAATTCTCCTTGGAAGATGAGCTTGATCAAGAAGTTGGCCTTGATATTTTCAAGCCAGATCCAGATTTTTTGGAGCATGAGAAAGCTTATGAAAACCTTAAGAAAGACATTCTTGGAGATGAATCTTCAGATGAAG
CAGAAGGTGAGAATGATTCAGGTCAGGAGTCAGATGATGATGAAGATGAAGAGGAGGAACAAGAGGAACAGTTACGCATACAGGATGAAACTGAGACAAACTTGGTAAATTTAAGACGTACAATTTACTTGACAATAATGTCAAGTGTTGATTTTGAGGAAGCTGGTCATAAGCTGCTAAAGATCAAGCTTGAACCTGGT
CAAGAGATGGAGTTATGCATCATGTTGTTAGAATGCTGCAGTCAAGAGAGAACATACCTGCGTTACTATGGTCTCCTGGGGCAGAGATTTTGTATGATCAACAAAATTTATCAGGAGTTTTTTGATAAGTGTTTTGTACAACAGTATTCTATGATCCACAGGCTGGAAACAAATAAGTTGCGTAATGTTGCAAAATTCTT
TGCACATTTACTGGGCACAGATGCCCTTCCATGGCATTGTCTTGCTTATATACGTCTGACAGAAGAGGATACAACTTCATCATCTCGCATTTTTATAAAGATCCTCTTCCAGGAGCTGGCAGAGCAGCTTGGCATACGATTGCTCAATGAAAGGTTGAATGAGCCGACAATGCAGGATTCATTTGAGTCAATTTTTCCGA
AGGACAATCCTAAGAACTCACGATTTGCCATCAACTTTTTCACCTCCATTGGTCTTGGTGGTATCACTGAGAGTTTGCGTGAATATTTGAAGAATATGCCAAGACTTATAATGCAGCAGCAGAAGCCCATTTCTGAATCTGATGCCTCAAGTTCTGACGATGAATCCTCTAGTTCTACAGGTTCATCTGACTCTGACTCT
GATAGCTCAGAATCAGAGTCAGAGAGTGAGAGTAAAAGAGAGATTGAGCGAAAGAGGAAAAAGAAAAATACCAGGGTTTCTTCTGCTTCTGAAAGTGAGAGTGGAAGTGAAAGCGAGGACGAGAGAAAGAGAAAAAGAAAGAAGACCAGGATTTCTTCTCATCCTGAGAGTGAAAGTGAAAGTGATGGTGATAGAAAGAA
AACGAAAAGGAAGAGAAGGTAGTAGAAGTCCTTCCGTTCAGTGAAAGACTTTGGCGGAGGCTCAGGAATTGAAGGGAATGCTACAGCTTCTTTAGTTTTGTTTCCTACTGTAATTATAAAAATGATGAGTTATCACTTAAGAATGATCAATAGTGCTTCAAAGAATTCAATGATTCGCTGGTCAATTATTATTCTGAGTT
GAAGCATATCCATATAGAACATTCAGTTTTCCACCTTCAGCAAGTTAAATGAAGAGTTTATTCTTTTGCTCGAGTTCCAATTAGCTTCCTGGAGAGGATTTCTAATGGAATGGTTAGTTTGAACTTTGTACATTTAATGTGGGATTTTTGAGAATGGTTTTTATTTTTGCTGGGTTTAATACTTTGTGCATTTTAAATAG
TGTCAGAAACACTTCAAAAAATCACACTTGCTATACAATTCTAAAT
>TRINITY_DN118203_c0_g1_i2 from sample A1 / Example unspliced isoform:GGCAGTCTTAGTGGGAAGGCTGGCTGCAATGGGGATAGTTAGCCCTATTCATTTCACGATTCAGATATGTTTCAATAAGCGATTTCAGTCTGATGTACCCAAATAGCTATTGGTGTCGGTGAATCGTAACACATCAGAAGATAAACTATTTATTCAGGGCGCCCGATCGATAGAGATATGAACCAGTCAGTATTGCTCGA
TCAATAGAGATTTATGCACTTGAATGAACAGGTACCGTCTATTTTAATAAATCTCTCTTAACCATAATAACTCTTGTTAACCATTACTCTTGGACGCGTCGGTTGTTGAAATTATTCTCATTCTGCATCATTGTATTAATATATCTGGTGGCAAACTCTTTCAAGAGACGGATAGGCCCGACTCAACAAAAAATGACTAC
CGTGGATAATCCGGGGAAAGAATCTGATTTTGATCACAACAGAAAACTTGAAACAGAGGATAGAATTGTTGATGAAATGGGTCACGGCGGAAGACAGCGCAGATCAGATGACGGGAAATCGCGCCGCGAGAGGGTTTCTGGTAGAGACAGGGCCGATGCGTATGGGGCGAATTCTGAGGATGAAAAGGGCAACAGAAATA
ATTCTGGAAGTAGGAGAAGTGCGTCCATTGATGGCGATAAAGCTAGGGTTTCTGATGGAAAACCTAGAAATGAACAGGACTATGGCAGGCGGCAACGATCAGATGGTGGGAAATCGGGCCGTGAAAGACACGGTTACGGCGGAAGAGAAAAATCTGTGGACGAAGAAGAAGGGAGGGATTCCAAAGAGGAAAAGAACGGC
AGAGGGCGCTTGCAAAACAGTAGGGATGCAGATAGAAGGGATGAAAAATTTGATACCAGTACGCGCCATCGGCATCGGCACCGTTCTGATCATGATACTGACGATGACAATAATGAAGAGAAGAGAAATAAAACCAAGGAAAAGGGAGGAAGATATGCAGGTGGTCCTTCAAATGTAGCAAGCGGGCAGGAGGAGGAAAA
CGAGGACGATGATCGTGCGAATGGCAATCGGAGAGATGATTATAATAGGAAACGGTTTTCGGATTACGAAGCAGATAGAGGCAGCAAGGACAGGTACCCAGATGGCAGGAGAAAGCATTCTAGGGAAGAATCTGACAGAGTAAGGGATAGGCACTCAGATTATGACAGGAAAAGACATTCCCAGGATGAATTCGACAGAG
GCAGGGGAAGATATGAAGATAGTGATGAAAGGCATGAAGAAAAGAAAAGGCGTTATGATGTTGATGATAAAAGATACAGGGACACTGCTGAACACAAGCTGAATCAAAGCAGTGGAAAATCTGAAGACAATTACAAGAGATCAAGGTCGGGCCTTTCACACAAGGACCCAGATGTGAGGGTCGATAAACGTAACCATGAA
CAGAGGAGGGATGATGAAACTCCTAGAAATGGAACAGTAGGGGCAAGAGAAGGAAACACTACTGTAGAATTGCCAAAAGCGAATCCCCCCGTTGTTTCAATTCGAAAAGAGGGAGTTGCAAACACTGAAAAGGCGCTTGGAAGAAGTGGTGGTGTGTATGTTCCTCCTTTCAAGCTGGCCCAAATGATGAAAGATTTGCA
AGATAAGAGCAGCTTGGAATATCAGCGTATGTCTTGGGATGCTCTTCGTAAGAGTATCAATGGGCTTGTAAACAAAGTGAATGCATCAAACATTAAAAACATTATTCCAGAGCTCTTTGCAGAGAACCTCATTCGGGGAAGAGGACTATTTTGTAGGTCATGTATGAAATCCCAAATGGCATCACCTGGATTTACTGATG
TTTTCGCTGCGTTGGTTGCTGTGGTGAATACAAAGTTTCCAGAAGTTGGTAATCTACTTTTGAGAAGAATTATTTTGCAGCTTAAAAGGGCTTTCAAACGCAATGACAAGCCTCTGTTATTGGCAGCAACAAAATTCATAGCTCATCTAGCGAACCAACAAGTTGCACATGAGATCATTACTTTGGAACTTCTTACTGTT
TTACTGGAGAATCCTACAGACGATAGTGTCGAGgtatagaattctagcttatggtttcattgtttgtgatcgtgcttaaaggatactaggtgctttggcatttgctcaatatgattcaggcgggttttctctcgaacatatgtcgatatttaaaataggatttcttctcttcagGTTGCCGTTGGATTTGTGAAAGAATG
CGGGTCCATGCTTCAAGACCTTTCACCTCAAGGCCTTTATGGAATTTTTGAACGATTTAGGGGTATTCTTCACGAGGGAGAAATTGACAAACGAGTGCAGTTTCTGATTGAAGGACTTTTTGCAATTCGCAAAATCAACTTCCAGGGTTATCCAGCTGTTCGTCCAGAACTCGATCTTGTGGAGCAAGAAGATCAGTTTA
CCCATGAATTCTCCTTGGAAGATGAGCTTGATCAAGAAGTTGGCCTTG