sp|Q7XCL0|EXLA2_ORYSJ ----> Expansin-like A2

Intron 1 GTATTGCATA ... ATTGATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20	24	6	6
A2	24.32	14	4	5
A3	37.7	19	11	12
A4	27.27	20	12	3
A5	51.72	7	8	7
A6	9.86	52.5	11.5	0
A7	10	63	6	8
A8	12.9	27	4	4
A9	12.31	57	12	4
A10	12.87	44	8	5

>TRINITY_DN105139_c0_g1_i2 from sample A3 / Example spliced isoform

CTTATAGCGCTGCGACAACACGCCATTTCACTTCTTTTTTGCTTGCATCAATATGGCCACTACAACACCAGCTGTCTTCTTGTTTTGCAGTTTGAGTTTCATTCTCGTCATCGTATTCCCAACTCAAGCATTAGGTTGCACCAGCTGCGTCCATCAATCTAAACTCGCCTATTATGCTTACTCAGGGGCCGTCAATGCTG
GCGCGTGTGGATACGGATCATTTGCATCAAGCCTCTATGGCGGGAATGTGGGAGCTGCTGGTTCTGATCTCTACAGAAATGGCGTTGCCTGTGGTGCATGCTATCAGATGAGATGCACAGACCCCAAATTATGTACTAAGTCAGGGACGACGATAGTAGTCACGGACCTCACACAGAATAACCAAACAGATTTTGTTGTA
ACCCGCAGCACATTCTCAAGCCTGGCACTAGCAGATAAGGGTTCCCAGCTTCTTCAAGCTGGGATTATAGATATCGAATATAAAAGGGTTCCCTGCGAGTACGAGGGCCAGAATATGCTGGTGAAGGTTGACAACCTTAGCCAGTATCCTCACTATCTTGCTGTCCAATTCTTATACCAAGGAGGCCAAACAGATATAGT
CAGCGTGGATGTTCAGCAGGTGGGTTCTTCTGATCGGCAGAACATGAACCGAAACTATGGCGCAGTTTGGGACATAGAGCAGCCACCGGAGGGTGCTCTCCAGTTTGGATTTGTGATATTCAGCAATTTCAATGGGAAAAGGGTGTGGCCGACAAAGCCTGTGCTTCCCTCCGACTGGAAAGTAGGGGGTGTTTATGATT
CTGGACTTCAGATCACTGATGTTGCTGGGGAGAAGTGTAGTCCGTGCGATGACAATGGTGGGGGATGGGTTGACTTTCCATGAAAATATAAATATATGTAATAAAATCAAATAAAATATCACCTACAATCATATGTAGTTGAATCCATAAGAGGTCTTTTAACTACGTTTCTTATAGGTGAACACTGAATATAATGCAAA
GTTTTATTTGCTTTATTACACACCTTTTCCTTTGCGAGGTCAAGAACGAAGTATAAAGTCTTAATACTTTTGTGATACAATAAAACATCTTGTTACCTTTTAGCAATCGCTAATAAGCGAGTGAAGGAAGTTGGTATTATTAAAAGCTGCAAGTAATGTGTTCATAGTTGTATTAGTTGGGTATGTACAGTTGTGGTAAT
TTTTTTTTGTCAAATTGGTAATTTTTATTATATTTATAGGTATTTATATTTTATGATTTGAAATAAAAAAAGAAGGGTCTTTTTCTTAAATTGTAAGAGAAGATGAGAAGATGAGACAAATGTATAGCTAAATTTAAAATAAATAATTATAAAAAAATATCTCAGTTTACGTGTGATAACTGATAGCTGAAAACTGGATA
ACAATGAGCAATTAATAACACGTAACTTGTGGCCTATCAATTTTCACCAGCCACAAATTAAGTGGTTGTGCTAGCTGTATAAATGGGATGAATAA

>TRINITY_DN105139_c0_g1_i4 from sample A3 / Example unspliced isoform:

CTTATAGCGCTGCGACAACACGCCATTTCACTTCTTTTTTGCTTGCATCAATATGGCCACTACAACACCAGCTGTCTTCTTGTTTTGCAGTTTGAGTTTCATTCTCGTCATCGTATTCCCAACTCAAGCATTAGGTTGCACCAGCTGCGTCCATCAATCTAAACTCGCCTATTATGCTTACTCAGGGGCCGTCAATGgta
ttgcataattgctaaaattatattagactgttgtgttccagtgggataaatttgtgtatccatggcgtaattactttttgtttgatgttattgatgcagCTGGCGCGTGTGGATACGGATCATTTGCATCAAGCCTCTATGGCGGGAATGTGGGAGCTGCTGGTTCTGATCTCTACAGAAATGGCGTTGCCTGTGGTGCA
TGCTATCAGGCAAGTCCTACAATTATGGCATAGCCCTTATTGCCCTTCAATGTATTTTACATTTTGTGTTGTTAGTTTTAGACATTTCTGGATATTCCAGATTTTAAGTTAGATGCCTT

Intron 2 GCAAGTCCTA ... GAATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	15.04	48	5	12
A2	17.54	47	6	14
A3	15.56	57	7	14
A4	19.3	23	7	4
A5	17.81	30	5	8
A6	10.2	88	5	15
A7	11.45	116	10	20
A8	11.25	71	0	18
A9	8.85	103	2	18
A10	7.25	64	3	7

>TRINITY_DN95414_c0_g1_i4 from sample A4 / Example spliced isoform

CAACACGCCATTTCACTTCTTTTTTGCTTGCATCAATATGGCCACTACAACACCAGCTGTCTTCTTGTTTTGCAGTTTGAGTTTCATTCTCGTCATCGTATTCCCAACTCAAGCATTAGGTTGCACCAGCTGCGTCCATCAATCTAAACTCGCCTATTATGCTTACTCAGGGGCCGTCAATGCTGGCGCGTGTGGATACG
GATCATTTGCATCAAGCCTCTATGGCGGGAATGTGGGAGCTGCTGGTTCTGATCTCTACAGAAATGGCGTTGCCTGTGGTGCATGCTATCAGATGAGATGCACAGACCCCAAATTATGTACTAAGTCAGGGACGACGATAGTAGTCACGGACCTCACACAGAATAACCAAACAGATTTTGTTGTAACCCGCAGCACATTC
TCAAGCCTGGCACTAGCAGATAAGGGTTCCCAGCTTCTTCAAGCTGGGATTATAGATATCGAATATAAAAGGTAAGTCGAGCATTACCCTAATCTGTTTTTCACACAGCCAGCCTTGGTAGGGGGTTAAGACAGATCATCAATATC

>TRINITY_DN95414_c0_g1_i1 from sample A4 / Example unspliced isoform:

CAACACGCCATTTCACTTCTTTTTTGCTTGCATCAATATGGCCACTACAACACCAGCTGTCTTCTTGTTTTGCAGTTTGAGTTTCATTCTCGTCATCGTATTCCCAACTCAAGCATTAGGTTGCACCAGCTGCGTCCATCAATCTAAACTCGCCTATTATGCTTACTCAGGGGCCGTCAATGGTATTGCATAATTGCTAA
AATTATATTAGACTGTTGTGTTCCAGTGGGATAAATTTGTGTATCCATGGCGTAATTACTTTTTGTTTGATGTTATTGATGCAGCTGGCGCGTGTGGATACGGATCATTTGCATCAAGCCTCTATGGCGGGAATGTGGGAGCTGCTGGTTCTGATCTCTACAGAAATGGCGTTGCCTGTGGTGCATGCTATCAGgcaagt
cctacaattatggcatagcccttattgcccttcaatgtattttacattttgtgttgttagttttagacatttctggatattccagatttaaagttagatgccatatttcaataattccaggtatcatcctgaagaataagggaatttatatttagatgacgatctattgaatttgcagATGAGATGCACAGACCCCAAAT
TATGTACTAAGTCAGGGACGACGATAGTAGTCACGGACCTCACACAGAATAACCAAACAGATTTTGTTGTAACCCGCAGCACATTCTCAAGCCTGGCACTAGCAGATAAGGGTTCCCAGCTTCTTCAAGCTGGGATTATAGATATCGAATATAAAAGGTAAGTCGAGCATTACCCTAATCTGTTTTTCACACAGCCAGCC
TTGGTAGGGGGTTAAGACAGATCATCAATATC